Glass Bead Method Research Articles

Analysis of Osmotic Tolerance, Physiological Characteristics, and Gene Expression of Salmonella enterica subsp. enterica Serotype Derby.

Salmonella is an important foodborne pathogen, and recent epidemiological studies have shown high infection rates of Salmonella enterica subsp. enterica serotype Derby (S.Derby) in poultry in western China and other regions. S.Derby presents increasing concerns with the development of resistance to hypertonic environments; however, there are few reports investigating the mechanism of resistance. Therefore, in this study, we examined hypertonic adaptation in S.Derby at the physiological and molecular levels. The K-B paper method, wiping glass bead method, crystal violet staining, and RT-PCR combined with comparative genomics analysis were employed to characterize virulence, drug resistance, biofilm formation, and changes in gene expression of genes related to hypertonic adaptation in S.Derby. Hypertonic-adapted S.Derby exhibited resistance to OXA, AMP, PEN, and CEP antibiotics, and biofilm-forming ability was 1.25 times that of nonadapted S.Derby. RT-PCR results showed that compared with nonadapted S.Derby, the expression of virulence-related genes in hypertonic-adapted S.Derby increased by 2-3 times, that of biofilm-related genes increased by 2-4 times, and that of OXA, AMP, PEN, and CEP-related drug resistance genes was relatively high. Four hypertonic tolerance-related genes (otsA, proV, proW, omsV) were preliminarily identified in S.Derby. The expression of proW was always relatively high in hypertonic-adapted S.Derby, the expression of otsA gradually became higher than that of proW with increasing time of osmotic stress, and the expression of proV and omsV was only high in non-hypertonic-adapted S.Derby.

Comparing the Ability of Secretory Signal Peptides for Heterologous Expression of Anti-Lipopolysaccharide Factor 3 in Chlamydomonas reinhardtii

Anti-lipopolysaccharide factor 3 (ALFPm3) possesses a wide antimicrobial spectrum and high antibacterial and viral activities for broad application prospects in the aquaculture industry. However, the application of ALFPm3 is limited by its low production in nature, as well as its low activity when expressed in Escherichia coli and yeast. Although it has been proven that its secretory expression can be used to produce antimicrobial peptides with strong antimicrobial activity, there is no study on the high-efficiency secretory expression of ALFPm3 in Chlamydomonas reinhardtii. In this study, signal peptides ARS1 and CAH1 were fused with ALFPm3 and inserted into the pESVH vector to construct pH-aALF and pH-cALF plasmids, respectively, that were transformed to C. reinhardtii JUV using the glass bead method. Subsequently, through antibiotic screening, DNA-PCR, and RT-PCR, transformants expressing ALFPm3 were confirmed and named T-JaA and T-JcA, respectively. The peptide ALFPm3 could be detected in algal cells and culture medium by immunoblot, meaning that ALFPm3 was successfully expressed in C. reinhardtii and secreted into the extracellular environment. Moreover, ALFPm3 extracts from the culture media of T-JaA and T-JcA showed significant inhibitory effects on the growth of V. harveyi, V. alginolyticus, V. anguillarum, and V. parahaemolyticus within 24 h. Interestingly, the inhibitory rate of c-ALFPm3 from T-JcA against four Vibrio was 2.77 to 6.23 times greater than that of a-ALFPm3 from T-JaA, indicating that the CAH1 signal peptide was more helpful in enhancing the secreted expression of the ALFPm3 peptide. Our results provided a new strategy for the secretory production of ALFPm3 with high antibacterial activity in C. reinhardtii, which could improve the application potentiality of ALFPm3 in the aquaculture industry.

Comparison of the fluctuations of the signals measured by ICP-MS after laser ablation of powdered geological materials prepared by four methods.

Sample preparation is a crucial point for quantitative multi-elemental analses by LA-ICP-MS of powdered geological materials. Four different methods are compared in this study with respect to signal stability and intensity as follows: the preparation of glass beads (GlassB) by alkaline fusion method and three grinding and pelletizing methods relying on the use of an organic binder (VanBind, vanillic acid), an adhesive binder (MixGlue, methyl methacrylate) and a sol-gel process for glass formation (SolGel, chemical reaction of tetraethoxysilane), respectively. Sixty elements were analyzed by means of a ns-UV (213nm) laser ablation system coupled to a single collector sector field ICP-MS with a low or medium mass resolution. Signal stability was found to strongly depend on the sample homogeneity provided by the preparation method. These methods were applied to three geological standard materials (CRM). The following criteria were used to evaluate and compare the methods: (1) proportion of the measurement cycles which are above a given signal intensity threshold (defined here as signal average ± 3 times the standard deviation), (2) signal stability of the analyzed nuclides (internal precision estimated by the relative standard deviations on raw count rates), (3) signal stability of the internal standards added to the samples, (4) external precision estimated by the relative standard deviation over five preparations for each geological CRM. For the majority of the analyzed elements, signals measured for samples prepared with the four methods are reproducible. Specific contamination in one or several elements (Cr, Fe, Co, Ni, Cu, Mo, W, Au and Bi) was observed depending on the sample preparation method. In addition, compared to grinding made with PTFE material, grinding performed with tungsten carbide material was found to produce better homogeneity, especially for the sol-gel and mixing with glue protocols, although some metallic contamination (W and Co) was observed. Thanks to the suppression of grain effects by alkaline melting, the glass bead method systematically provided signal stability and percentage of "over the threshold" close to those of the NIST glasses. This may be explained by the preparation of more homogeneous samples by alkaline melting. Finally, the described methods were found to be reproducible for the majority of the analyzed elements.

Single step method for high yield human platelet lysate production.

We aimed to develop a single step method for the production of human platelet lysate (hPL). The method must result in high hPL yields, be closed system and avoid heparin use. The method aimed at using glass beads and calcium. An optimal concentration of calcium and glass beads was determined by serial dilution. This was translated to a novel method and compared to known methods: freeze-thawing and high calcium. Quality outcome measures were transmittance, fibrinogen and growth factor content, and cell doubling time. An optimal concentration of 5 mM Ca2+ and 0.2 g/ml glass beads resulted in hPL with yields of 92% ± 1% (n=50) independent of source material (apheresis or buffy coat-derived). The transmittance was highest (56% ± 9%) compared to known methods (<39%). The fibrinogen concentration (7.0 ± 1.1 μg/ml) was well below the threshold, avoiding the need for heparin. Growth factor content was similar across hPL production methods. The cell doubling time of adipose derived stem cells was 25 ± 1 h and not different across methods. Batch consistency was determined across six batches of hPL (each n=25 constituting concentrates) and was <11% for all parameters including cell doubling time. Calcium precipitation formed after 4 days of culturing stem cells in media with hPL prepared by the high (15 mM) Ca2+ method, but not with hPL prepared by glass bead method. The novel method transforms platelet concentrates to hPL with little hands-on time. The method results in high yield, is closed system, without heparin and non-inferior to published methods.

Heterologous expression of human C-reactive protein in the green alga Chlamydomonas reinhardtii.

C-reactive protein (CRP) participates in human inflammatory responses and is an important indicator in clinical diagnoses. At present, the use of monoclonal antibodies to detect CRP in the human body is high, but they are unstable and expensive. Understanding the CRP expression pathway is of great significance for developing CRP tests and reagents. Chlamydomonas reinhardtii is a model organism that has great potential as a foreign protein expression system. This study is the first attempt to express human CRP in C. reinhardtii. We selected the endogenous constitutive Rbcs2 promoter and terminator and used ble as a selective gene to construct a C. reinhardtii nuclear expression vector containing CRP. After transformation using the glass bead method, six positive transformants were obtained. At the molecular level, full-length CRP was transformed into the genome of C. reinhardtii CC400 cells, and human CRP was expressed. This study provides new insights into obtaining active CRP. PRACTICAL APPLICATIONS: Based on the nuclear transformation system of C. reinhardtii, it can construct an exogenous protein expression system that produces a variety of high value-added products and can be used to produce a variety of high value-added proteins, functional drugs, and industrial raw materials. It has broad market prospects and huge application prospects.

Evaluation of in vitro methods of anthelmintic efficacy testing against Ascaridia galli.

To investigate methods for in vitro assessment of anthelmintic efficacy against the chicken nematode Ascaridia galli this study firstly evaluated sample preparation methods including recovery of eggs from excreta using different flotation fluids and induced larval hatching by the deshelling-centrifugation method and the glass-bead method with or without bile. It then evaluated two in vitro assays, the in-ovo larval development assay (LDA) and larval migration inhibition assay (LMIA), for anthelmintic efficacy testing against A. galli using fresh eggs and artificially hatched larvae, respectively. Four anthelmintics, thiabendazole (TBZ), fenbendazole (FBZ), levamisole (LEV) and piperazine (PIP) were employed using an A. galli isolate of known susceptibility. The results suggested that the LDA and LMIA could successfully be used to generate concentration response curves for the tested drugs. The LDA provided EC50 values for inhibition of egg embryonation of 0.084 and 0.071 μg/ml for TBZ and FBZ, respectively. In the LMIA, the values of effective concentration (EC50) of TBZ, FBZ, LEV and PIP were 105.9, 6.32, 349.9 and 6.78 × 107 nM, respectively. For such in vitro studies, a saturated sugar solution showed high egg recovery efficiency (67.8%) and yielded eggs of the highest morphological quality (98.1%) and subsequent developmental ability (93.3%). The larval hatching assays evaluated did not differ in hatching efficiency but the deshelling-centrifugation method yielded larvae that had slightly better survival rates. For final standardization of these tests and establishment of EC50 reference values, tests using isolates of A. galli of defined resistance status need to be performed.

Efficiency of three boar sperm enrichment techniques.

The objective of the study was to investigate the efficiency of three enrichment methods to separate boar spermatozoa. Twenty-four ejaculates from 12 boars (2 ejaculates/boar) were extended (30×106 spermatozoa/mL) in commercial Beltsville Thawing Solution. Each semen sample was processed with glass wool column (GW) and glass beads (GB) filtration and with the single-layer centrifugation (SLC) technique. Semen samples before (control; C) and after treatment were evaluated for sperm CASA motility/kinetics and concentration, viability, morphology and chromatin integrity. Data were analysed with mixed models. The concentration of total and motile spermatozoa was significantly decreased after treatment in groups GW and SLC, but not in group GB. Group GW showed increased values of WOB compared with both groups C and GB. Group GB showed greater values of rapid movement spermatozoa and lower values of slow movement spermatozoa compared with group C. In group SLC, higher values of VSL, LIN and STR were observed compared with group C. In conclusion, all techniques under examination enhanced various CASA variables. Based on our results, the GB method is a promising alternative separation technique for boar sperm and deserves further research regarding swine in vitro fertilization.

Expression of Anti-Lipopolysaccharide Factor Isoform 3 in Chlamydomonas reinhardtii Showing High Antimicrobial Activity.

Antimicrobial peptides are a class of proteins with antibacterial functions. In this study, the anti-lipopolysaccharide factor isoform 3 gene (ALFPm3), encoding an antimicrobial peptide from Penaeus monodon with a super activity was expressed in Chlamydomonas reinhardtii, which would develop a microalga strain that can be used for the antimicrobial peptide production. To construct the expression cluster, namely pH2A-Pm3, the codon optimized ALFPm3 gene was fused with the ble reporter by 2A peptide and inserted into pH124 vector. The glass-bead method was performed to transform pH2A-Pm3 into C. reinhardtii CC-849. In addition to 8 μg/mL zeocin resistance selection, the C. reinhardtii transformants were further confirmed by genomic PCR and RT-PCR. Western blot analysis showed that the C. reinhardtii-derived ALFPm3 (cALFPm3) was successfully expressed in C. reinhardtii transformants and accounted for 0.35% of the total soluble protein (TSP). Furthermore, the results of antibacterial assay revealed that the cALFPm3 could significantly inhibit the growth of a variety of bacteria, including both Gram-negative bacteria and Gram-positive bacteria at a concentration of 0.77 μM. Especially, the inhibition could last longer than 24 h, which performed better than ampicillin. Hence, this study successfully developed a transgenic C. reinhardtii strain, which can produce the active ALFPm3 driven from P. monodon, providing a potential strategy to use C. reinhardtii as the cell factory to produce antimicrobial peptides.

Evaluation of Bonding Gap Control Methods for an Epoxy Adhesive Joint of Carbon Fiber Tubes and Aluminum Alloy Inserts.

The aim of this paper is to compare two methods of epoxy adhesive bond gap control: one with a geometrical (mechanical) solution and the other with glass beads, which have the diameter of the desired bond gap and are mixed with an epoxy adhesive. The adhered materials were carbon fiber composite tubes and aluminum alloy inserts, which were used as wishbones in a suspension system of a motorsport vehicle. It was assumed that the gap thickness would be equal to 0.2 mm and the length of a bond would be 30 mm. The internal diameter of the tubes was 14 mm and 18 mm, whereas the inserts’ external diameter was 13.6 mm and 17.6 mm. Their surface has been subjected to mechanical treatment with sand paper starting from 240 grit up to 400. The adhesives used were EA 3425 and EA 9466 cured at 80 °C for 2 h. The results showed that the glass beads method provides more consistent and better results as compared to the geometrical (mechanical) method. Further study in the area of fatigue and interfacial failure modes could be useful.

Comparison of different DNA extraction procedures for Eimeria oocysts

A study was carried out to compare the efficacy of different DNA extraction procedures for Eimerian oocysts. A total of 753 litter and fecal samples and intestines were collected from desi poultry farms and slaughter houses in Bengaluru, Karnataka. Out of five different methods of DNA extraction procedures the glass bead method was found to be the best method. Since the above method involves breaking of the oocysts and sporocysts walls and dissolving the sporozoites membrane. This greatly simplifies the currently used DNA extraction procedures for Eimeria species. The liquid nitrogen method was also found to be good but was more critical and time consuming. Other methods such as sodium hypochlorite, direct and sonication has failed to yield DNA from Eimeria oocysts. The present study indicates that glass beads method yielded better quality of DNA for molecular analysis and it is suitable for both large and small number (˂1x103) of oocysts in a sample. Hence, can be used as a routine procedure for DNA extraction for Eimerian oocysts.

TIM, a targeted insertional mutagenesis method utilizing CRISPR/Cas9 in Chlamydomonas reinhardtii.

Generation and subsequent analysis of mutants is critical to understanding the functions of genes and proteins. Here we describe TIM, an efficient, cost-effective, CRISPR-based targeted insertional mutagenesis method for the model organism Chlamydomonas reinhardtii. TIM utilizes delivery into the cell of a Cas9-guide RNA (gRNA) ribonucleoprotein (RNP) together with exogenous double-stranded (donor) DNA. The donor DNA contains gene-specific homology arms and an integral antibiotic-resistance gene that inserts at the double-stranded break generated by Cas9. After optimizing multiple parameters of this method, we were able to generate mutants for six out of six different genes in two different cell-walled strains with mutation efficiencies ranging from 40% to 95%. Furthermore, these high efficiencies allowed simultaneous targeting of two separate genes in a single experiment. TIM is flexible with regard to many parameters and can be carried out using either electroporation or the glass-bead method for delivery of the RNP and donor DNA. TIM achieves a far higher mutation rate than any previously reported for CRISPR-based methods in C. reinhardtii and promises to be effective for many, if not all, non-essential nuclear genes.

The Density, Porosity, and Pore Morphology of Fall and Find Ordinary Chondrites

AbstractDensity, porosity, and pore morphology constitute the basic physical properties of meteorites. These properties of 214 fragments from 163 different ordinary chondrites (OCs), including falls, non‐Antarctic finds, and Antarctic finds, were measured, calculated, and investigated. Of all the measured OCs data, densities, and porosities of 37 OC falls (14 H, 17 L, and 6 LL), 31 non‐Antarctic finds (9 H and 22 L), and 95 Antarctic finds (24 H and 73 L) are reported for the first time. The individual masses of all the meteorite fragments measured in this study ranged between 0.8953 and 7.7133 g, and these masses were too low to be measured by the Archimedean glass bead method. Our study indicated that the grain density and porosity of find OCs are significantly reduced by terrestrial weathering. As a result, such OCs are not suitable for their physical propertie study. Shock degree ≤S2 slightly increases the measurable porosities of the meteorites by generating a certain amount of tiny cracks in the silicates to connect some isolated pores with the measurable pores. Shock degree over S2 significantly reduces the porosities of meteorites by compacting or even melting the material. Weathering reduced the porosities via space filling of weathering products. Shock load over S2 reduced the porosities of the meteorites by minerals compressing or melting. Moreover, the shock load over S2 also converted intergrain irregular pores into intragrain cracks. Thermal metamorphism mainly changed the pore morphology (size) by pore merging during mineral recrystallization. The pore morphology also plays a significant role in controlling the friability of OCs.

Biosynthesis and Secretion of Human Tissue Kallikrein in Transgenic Chlamydomonas reinhardtii.

The green alga Chlamydomonas reinhardtii was recently been shown to be an effective bio-manufacturing platform for the production of recombinant proteins. The advantage of using C. reinhardtii is that it is fast to grow, inexpensive to culture, and relatively safe. However, the expression of foreign proteins is always low and difficult to purify in C. reinhardtii. Human kallikrein has the potential to be developed into certain drugs, like insulin. Therefore, its biosynthesis is important to drug development. In this study, we synthesized the sg gene, a signal peptide sequence of alkaline phosphatase, and inserted it into a pH124 plasmid, which contains a HSP70A-RBCS2 promoter and a RBCS2 terminator. Then, we inserted the human kallikrein gene klk1 behind the sg sequence to make a pHsgk124 vector. The pHsgk124 were transferred into a cell-wall deficient strain of C. reinhardtii, cc-503, by using the glass bead method. Southern blot analysis showed that sg and klk1 were incorporated into genes of the transgenic C. reinhardtii. RT-PCR analysis showed that it had an active transcription and its expression increased three times under heat stress. Western blot analyses of proteins inside and outside cells (in the culture medium) showed that klk1 was expressed in the cell and the resulting protein was secreted into medium. An enzyme activity assay showed that the recombinant protein had the ability to hydrolyze the specific substrate H-D-Val-Leu-Arg-Pna. In conclusion, we successfully bioengineered C. reinhardtii to produce and secrete human kallikrein protein, which has important biomedical implications.

Studies on Squalene Biosynthesis and the Standardization of Its Extraction Methodology from Saccharomyces cerevisiae.

In this study, a homogenization-based extraction method was developed and was compared to five conventional methods of squalene extraction. Squalene recovered from this novel procedure gave 3.5-fold, 10-fold, 16-fold, and 8.1-fold higher yield than standard procedures, viz., saponification with 60% KOH, acidic saponification, saponification with 18% KOH, and glass beads method, respectively. Furthermore, this procedure has been evaluated on laboratory Saccharomyces cerevisiae strains such as BY4742 and CEN.PK2-1C (native), deletion strains (ERG6 and ERG11), and tHMG1 overexpressed S. cerevisiae strains. When sonication method of cell lysis was replaced with homogenization, it was found that the yields were significantly higher and reached a value of 9mg/g DCW in case of BY4742. In addition, squalene yield in ergosterol mutant strains has been analyzed and was found to be 1.8-fold and 3.4-fold higher in ERG6 and ERG11 deletion strains, respectively, than in BY4742. Squalene was also found to be higher at the optimized temperature of 30°C and pH6.0. Furthermore, tolerance of S. cerevisiae to external squalene at various concentrations has been carried and found that the organism was tolerant up to 25g/L of squalene.

Effect of overexpression of LPAAT and GPD1 on lipid synthesis and composition in green microalga Chlamydomonas reinhardtii

Biodiesel is an alternative energy source which has attracted increasing attention lately. Although algae-based biodiesel production has many benefits, it is still far from industrial application. Research suggests that improving lipid quality and production through genetic engineering of metabolic pathways will be the most promising way. To enhance lipid content, both lysophosphatidic acyltransferase gene (c-lpaat) and glycerol-3-phosphate dehydrogenase gene (c-gpd1), optimized according to the codon bias of Chlamydomonas reinhardtii, were inserted into the genomic DNA of model microalga C. reinhardtii by the glass bead method. Transgenic algae were screened by zeomycin resistance and RT-PCR. The transcription levels of inserted genes and the fatty acid content were significantly increased after intermittent heat shock. Most of all, the transcription levels of c-lpaat and c-gpd1 were increased 5.3 and 8.6 times after triple heat shocks, resulting in an increase of 44.5 and 67.5% lipid content, respectively. Furthermore, the content of long-chain saturated fatty acids and monounsaturated fatty acids, especially C18 and C18:1t, notably increased, while unsaturated fatty acids dramatically decreased. The results of this study offer a new strategy combining genetic manipulation and intermittent heat shock to enhance lipid production, especially the production of long-chain saturated fatty acids, using C. reinhardtii.

Development of a simple and efficient method of harvesting and lysing adherent mammalian cells for chemical isotope labeling LC-MS-based cellular metabolomics

Chemical isotope labeling (CIL) liquid chromatography mass spectrometry (LC-MS) has a potential to become a very powerful platform for comprehensive and quantitative analysis of metabolites in cellular metabolomics. While CIL LC-MS with rationally designed reagents for labeling can provide much enhanced detection and quantification of metabolites, pre-analytical process such as cell harvest and cell lysis is also a critical step in the overall workflow for metabolomic analysis. In this study, we examined various combinations of cell harvest and cell lysis methods in order to develop a simple and efficient method for harvesting and lysing adherent mammalian cells tailored to CIL LC-MS-based cellular metabolomics. We evaluated and compared two cell harvest methods (physical scraping and trypsinization) and two cell lysis methods (glass-bead-assisted lysis and freeze-thaw-cycle lysis). We used two types of commonly used mammalian cells, HeLa and MCF-7 cells, to cross-validate the findings. LC-UV quantification of the labeled metabolites after dansylation of cell extracts was used to compare the overall cell harvest and cell lysis efficiencies among different combination methods. It was found that scraping combined with freeze-thaw-cycle lysis gave the highest total metabolite concentration. We also performed multivariate and univariate analyses of the amine/phenol submetabolome data generated from different preparations to investigate the impact of cell harvest and lysis methods on cellular metabolome profiles. Comparing to scraping, trypsinization caused more significant metabolome changes likely due to metabolite leakage and metabolite level changes. The cellular metabolomes obtained from the two lysis methods were found to be similar; however, freeze-thaw-cycle lysis gave a higher lysis efficacy, compared to the glass bead method. We concluded that the combination of scraping and freeze-thaw-cycle was optimal for harvesting and lysing adherent mammalian cells for CIL LC-MS metabolomics.

Use of microalgae Chlamydomonas reinhardtii for production of double-stranded RNA against shrimp virus

RNA interference has been proposed to be a promising tool for combating shrimp viruses. Antiviral double-stranded (ds)RNA has been mostly produced in Escherichia coli-expression system because of its high efficiency and inexpensive operations. However, overusing the bacteria may raise concerns regarding public health and environmental contamination, and seeking for a new dsRNA production platform would be alternative for future molecular farming. In this study, we exploited the green microalgae Chlamydomonas reinhardtii to produce dsRNA targeting the lethal shrimp yellow head virus (YHV). The expression plasmid pSL18 for C. reinhardtii was constructed to contain YHV-specific hairpin RNA expression cassette, and the successful assembly of pSL18-YHV was confirmed by PCR and enzymatic digestions. Glass bead method was employed for transformation of C. reinhardtii nuclear genome with pSL18-YHV. Microalgal expression of dsRNA-YHV, approximately 45ng from 100-mL culture, was detected by qRT-PCR. Oral feeding experiment on postlarval shrimp revealed that the formulated feed with C. reinhardtii expressing dsRNA-YHV, at the ratio of 1×108 transformants per gram feed, improved 22% survival rate after YHV challenge. The present study suggests that C. reinhardtii can be bioengineered to produce viral-specific dsRNA for shrimp viral disease control, and the developed qRT-PCR could detect microalgal dsRNA with detection limit of subpicogram.

A technical breakthrough close at hand: feasible approaches toward establishing a gene-targeting genetic transformation system in seaweeds

The lack of a genetic transformation system that allows integration of a foreign gene into the genome is a serious hindrance to progress in biological research on seaweeds. In contrast, physiological research in seaweeds has a long history of focus on the establishment of cell polarity and multicellularity (Brownlee and Bouget, 1998; Hable and Hart, 2010). Today, nuclear genomes have been recently sequenced for many species of seaweeds and there is now a significant accumulation of genomic information in the form of expressed sequence tag data in public and private databases for analyses (see Mikami, 2014). Although physiological and molecular biological approaches have the potential to allow genome-wide and comprehensive analyses of factors involved in seaweed development, the lack of a genetic transformation system hinders functional identification of genes encoding regulatory components of seaweed development. This is impeding the application of the molecular biological knowledge in industrial and economic activities related to seaweed. Because genetic manipulation systems are indispensable for the functional analysis of genes, it is necessary to develop reverse genetic methods for gene knock-out, knock-in, or replacement in a variety of seaweeds via either homologous recombination or random integration of foreign DNA with a marker to identify its integration site in the genome. To accelerate progress toward establishing genetic transformation methods, there are four important issues to be resolved: (1) creating expression constructs particularly suited to seaweed cells; (2) transferring the expression constructs into cells; (3) ensuring integration of expression constructs into the genome; and (4) selecting genetically transformed cells. It has already been confirmed that combining codon-optimized coding regions and endogenous strong promoters results in high-efficiency expression in seaweed cells (Mikami et al., 2011; Mikami and Uji, 2012; Mikami, 2013). Seaweed genomes generally have high GC content and thus coding sequences should be biased toward higher amounts of G and C. Moreover, the Cauliflower mosaic virus (CaMV) 35S RNA promoter that has been used for foreign gene expression in seaweeds prior to establishment of the transient gene expression has rather low activity in seaweed cells (Mikami et al., 2011; Mikami and Uji, 2012; Mikami, 2013). But importantly, neither the codon optimization nor endogenous promoters yet tested could enhance the expression of foreign genes in seaweeds (Mikami et al., 2011). These findings clearly indicate that codon-optimized coding regions directed by strong endogenous promoters will be required elements of the design of constructs that can be expressed efficiently in seaweed cells (Mikami et al., 2011; Mikami and Uji, 2012; Mikami, 2013). This strategy has already been applied to a wide variety of red seaweeds (Hirata et al., 2011a,b; Son et al., 2011). Moreover, the second requirement for genetic transformation, to transfer expression constructs into cells, has been resolved using particle bombardment technology in red seaweeds (Mikami et al., 2011; Mikami and Uji, 2012; Mikami, 2013) and microinjection in Ectocarpus siliculosus (Farnham et al., 2013). However, neither electroporation nor glass bead methods have yet been successful for transferring DNA constructs into seaweed cells. Our preliminary data indicated that the glass bead method and various gene transfer regents designed for mammalian cells were ineffective for cell wall–less protoplasts and monospores from the red seaweed Pyropia yezoensis. Taken together, the third and fourth issues—to ensure integration of expression constructs into the genome, and select genetically transformed cells, respectively—still have to be resolved to establish nuclear genetic transformation.

Preparation of recombinant human canstatin using transgenic &amp;lt;italic&amp;gt;Dunaliella salina&amp;lt;/italic&amp;gt;

Canstatin, which possesses a significant inhibition effect on the migration of endothelial cells and a strong anticancer effect [1,2], has been applied in the treatment of many cancers including human oral, breast, prostate, pancreatic, and colorectal [3–7]. However, because the expression of bioactive recombinant canstatin is very low using the current expression systems, e.g. prokaryotic Escherichia coli expression system [6], its application has still been limited to clinical trials. Several eukaryotic cell expression systems have been exploited for canstatin production, such as Bombyx mori cells [8] and Drosophila melanogaster S2 cells [9], but they also have a lot of disadvantages, for example, high culture cost, poor yield, and difficulty in purification. Therefore, it is necessary and urgent to develop an optimal expression system for the large-scale production of the recombinant canstatin. Transgenic Dunaliella salina (UTEX-1644) system as a novel potential bioreactor [10,11] is an optimal alternative for the production of the recombinant canstatin due to the following advantages: (i) this expression system has the potential for large-scale production of exogenous proteins; (ii) D. salina has been extensively used in industrial and pharmaceutical areas owing to the capability of accumulating valuable fine components such as carotenoids, vitamins, minerals, and proteins; (iii) D. salina cells themselves are natural protoplasts, and can be easily transformed and cultured; (iv) eukaryotic D. salina cells have the post-transcriptional and post-translational modifications for the production of bioactive proteins. In the present study, therefore, we tried to develop a novel eukaryotic expression system for the recombinant canstatin by using transgenic D. salina, and this system will provide a new, safe, and environmental protection platform for the large-scale production of human recombinant canstatin. The main materials used in this study were as follows: plasmids pBI221-bar and pUV-GUS were obtained as a gift from Prof. Yongru Sun (Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China). D. salina strain UTEX-1644 was purchased from the Algae Culture Collection at the University of Texas (Austin, USA) and cultured in the modified PKS medium under a light intensity of 50 mmol photon m s with a 12/12-h light/day [12]. To amplify the canstatin gene, the total RNA of human placental tissues was isolated. The Primer 1 (50-ACTCCC GGGGTCAGCATCGGCTACCTCCT-30) and Primer 2 (50-CCGAGCTCTCAATGGTGATGGTGATGGTG CA GGTTCTTCATGCACAC-30) were designed in which the Sma_ and Sac_ sites (underlined) were introduced respectively (the bold sequence represents the sequence of His6). Using the above RNA and primers, the human canstatin gene was amplified by reverse transcription–polymerase chain reaction (RT–PCR) and the results showed that a specific fragment of 700 bp was successfully amplified. The results of sequencing indicated that the amplified DNA fragment was completely identical to the nucleotide sequence reported in GenBank. Then, the canstatin gene was inserted into pMD18-T (TaKaRa, Dalian, China) to yield a new plasmid pMD18-T-Can for plasmid propagation and DNA sequencing. Subsequently, the canstatin fragment cut from the pMD18-T-Can by digestion of endonucleases was inserted into pUV-GUS to generate a novel vector pUV-Can. After being confirmed by digestion of double enzymes, the pUV-Can was recovered and further connected with the bar box to generate a eukaryotic expression vector pUV-Can-Bar. pUV-Can-Bar vectors were transformed into the D. salina cells using the glass beads method [12], and then the transformed D. salina cells were incubated for 24 h under dim light conditions. After the transformed D. salina cells were incubated for 2 weeks on a 1% agar plate containing 3 mg/l of phosphinothricin (PPT), the individual positive colonies were observed, among which four colonies were picked out and inoculated into the liquid medium with 3 mg/l of PPT for further selection. The resistant test of the transformants demonstrated that all the transformants survived from the following Acta Biochim Biophys Sin 2014, 46: 428–430 |a The Author 2014. Published by ABBS Editorial Office in association with Oxford University Press on behalf of the Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences. DOI: 10.1093/abbs/gmu009. Advance Access Publication 23 March 2014

Comparison of Four Methods for DNA Extraction From Echinococcus granulosus Protoscoleces

Cystic echinococcosis caused by the dog tapeworm Echinococcus granulosus, is a global zoonotic infection which is economically important and constitutes a major threat to public health in many countries, especially in Middle Eastern countries. Strain characterization is essential for the establishment of a preventive and control strategy in every endemic area. Before all molecular studies, it is necessary to achieve DNA of the parasite. The aim of this study was to compare four simple methods of DNA extraction from protoscolecses of E. granulosus in samples from the West Azerbaijan province of Iran. After collecting sheep and cow hydatid cysts from several slaughterhouses of the province, DNA samples were extracted using four different methods involving the use of glass beads, commercial DNA extraction kit, boiling and crushing. For all DNA samples extracted, electrophoresis on 1.3% agarose gel was performed. The methods were compared regarding DNA, time and cost effectiveness and facility. All methods showed some advantages and disadvantages. The commercial kit method, which was the most time and cost effectiveness method, achieved no bands and glass beads method had the best results on gel electrophoresis. Glass beads and boiling methods were the most suitable methods regarding their ease, quickness and cost effectiveness.