Elevated atmospheric heat is considered as one of the bottlenecks for global wheat production. Screening potential wheat genotypes against heat stress and selecting some suitable indicators to assist in understanding thermotolerance could be crucial for sustaining wheat cultivation. Accordingly, 80 diverse bread wheat genotypes were evaluated in controlled lab condition by imposing a week-long heat stress (35/25 °C D/N) at the seedling stage. The response of heat stress was evaluated using multivariate analysis techniques on 20 morpho-physiological traits. Results showed significant variations in the studied traits due to the imposition of heat stress. Eleven seedling traits that contributed significantly to the genotypic variability were identified using principal component analysis (PCA). A substantial correlation between most of the selected seedling attributes was observed. Hierarchical cluster analysis identified three distinct clusters among the tested wheat genotypes. Cluster 1, consisting of 33 genotypes, exhibited the highest tolerance to heat stress, followed by Cluster 2 (18 genotypes) with moderate tolerance and Cluster 3 (29 genotypes) showing susceptibility. Linear discriminant analysis (LDA) approved that nearly 93 % of the wheat genotypes were appropriately ascribed to each cluster. The squared distance analysis confirmed the distinct nature of the clusters. Using multi-trait genotype-ideotype distance index (MGIDI), all 12 identified tolerant genotypes (BG-30, BD-468, BG-24, BD-9908, BG-32, BD-476, BD-594, BD-553, BD-488, BG-33, BD-495, and AS-10627) originated from Cluster 1. Selection gain in MGIDI analysis, broad-sense heritability, and multiple linear regression analysis together identified shoot and root dry and fresh weights, chlorophyll contents (a and total), shoot tissue water content, root-shoot dry weight ratio, and efficiency of photosystem II (PS II) as the most vital discriminatory factors explaining heat stress tolerance of 80 wheat genotypes. The identified genotypes with superior thermotolerance would offer resourceful genetic tools for breeders to improve wheat yield in warmer regions. The traits found to have greater contribution in explaining heat stress tolerance will be equally important in prioritizing future research endeavors.