Fungal Succession Research Articles

Fungal succession and decomposition of beech cupule litter

AbstractBeech cupule litter is the second largest (next to leaf litter) component of total annual litterfall in mast years, and makes an important contribution to carbon budgets in beech forest soils. We investigated the decomposition processes of beech cupule litter over a 30‐month period with reference to the role of fungal succession in the decomposition of acid‐unhydrolyzable residue (AUR) and holocellulose. During the study period, weight loss of holocellulose occurred, while there was little weight loss of AUR, and 77 % of the original cupule weight remained at the end of the study period. Xylaria sp.1, Geniculosporium sp. and Nigrospora sp. that can attack holocellulose selectively caused mass loss of holocellulose and were responsible for the cupule weight loss. Although the beech cupule is a woody phyllome and its lignocellulose composition is similar to that of coarse woody debris (CWD) rather than leaf litter of beech, the selective decomposition of holocellulose by fungi was similar to the decay process of leaf litter rather than CWD.

Wildfire and post-fire management effects on early fungal succession in Pinus mugo plantations, located in Curonian Spit (Lithuania)

The objective of this study was to evaluate the effects of wildfire and subsequent forest management on the diversity and functional community structure of fungi during early stage of succession in the coastal sand dunes of the Curonian Spit in Lithuania. 12 permanent study plots were established in multiple forest areas: burnt, not managed (B); burnt, clear-cut (C); burnt, clear-cut and reforested (R) and unburnt (U). During three years of the study, a total of 390 different fungal species were determined. The overall number of recorded species in studied post-fire variants comprised 52% (B), 41% (C) and 48% (R) of unburnt sites (U, 261 species). Significantly different species compositions were registered between C and B plots, while no difference was observed between C and R plots. Fungal communities of all burnt sites showed more significant differences stemming from annual changes rather than from types of forest management. Early succession of the post-fire fungal communities maintained the fungi from all defined taxonomical and functional groups. However, a certain alteration within some fungal life styles was observed. The wildfire has negatively impacted the lichens and the mycorrhizal species, as the percentages of these groups decreased from 15% and 12% in U plots to 10% and 3% in B plots. Wood saprobic fungi and soil saprobes were affected negatively by harvesting of the burnt trees that reduced their percentage from 38% and 8% in B plots to 27% and 4% in C plots. Soil-associated fungi were less affected both by fire and post-fire management than the fungi inhabiting above-ground substrates. The percentage of soil-associated fungi initially increased in the burnt sites, but two years after the fire it returned to the pre-fire level. No significant effect on soil-inhabiting fungi was noted for the differently managed post-fire sites.

Airborne fungal succession in a rice field of Cuba

This study characterised the airborne mycobiota of a rice plantation in Bauta (Havana, Cuba), with a view to improving crop quality. Culturable airborne fungi were sampled between March 2007 and February 2008 using a volumetric method (SAS Super 100) with potato dextrose agar as culture medium. The total fungal count was 51,425 cfu/m3. The 39 filamentous genera identified included several major rice pathogens (Bipolaris, Curvularia, Alternaria, Pyricularia, Cercospora and Fusarium) as well as potentially mycotoxigenic species of Fusarium, Penicillium and Aspergillus. Analysis of the influence of weather-related factors on spore counts revealed that total counts and Penicillium counts correlated positively with daily relative humidity, mean temperature and dew point.

Bacterial, Archaeal and Fungal Succession in the Forefield of a Receding Glacier

Glacier forefield chronosequences, initially composed of barren substrate after glacier retreat, are ideal locations to study primary microbial colonization and succession in a natural environment. We characterized the structure and composition of bacterial, archaeal and fungal communities in exposed rock substrates along the Damma glacier forefield in central Switzerland. Soil samples were taken along the forefield from sites ranging from fine granite sand devoid of vegetation near the glacier terminus to well-developed soils covered with vegetation. The microbial communities were studied with genetic profiling (T-RFLP) and sequencing of clone libraries. According to the T-RFLP profiles, bacteria showed a high Shannon diversity index (H) (ranging from 2.3 to 3.4) with no trend along the forefield. The major bacterial lineages were Proteobacteria, Actinobacteria, Acidobacteria, Firmicutes and Cyanobacteria. An interesting finding was that Euryarchaeota were predominantly colonizing young soils and Crenarchaeota mainly mature soils. Fungi shifted from an Ascomycota-dominated community in young soils to a more Basidiomycota-dominated community in old soils. Redundancy analysis indicated that base saturation, pH, soil C and N contents and plant coverage, all related to soil age, correlated with the microbial succession along the forefield.

Addition of coarse woody debris – The early fungal succession on Picea abies logs in managed forests and reserves

Modern forestry practices have decreased the abundance of coarse woody debris (CWD), and as a result many species that depend on dead wood are now threatened. This implies a need to develop forestry practices that maintain biodiversity. We examined the conservation value of experimental spruce logs (control logs, logs placed in natural shade, and cut tree tops) for wood-inhabiting fungi in two forest stands, one nature reserve and one mature managed forest, in each of seven forest areas in northern Sweden. Here we report the initial findings of the experiment that was established in winter 2001–2002 and data were collected in 2002, 2003 and 2006. A pre-inventory of the local species composition in 2002 revealed a higher per area species richness, including red-listed species, in reserves than in managed forests. Ordination analyses of the experimental logs showed a significant effect of area, while not of stand type in 2003. ANOVA analysis showed no significant effect of stand type on species richness and abundance. In 2006, the species assemblage started to differentiate between the two stand types and forest age, forest site type (moisture), and distance to forest reserves, all explained part of the variation, whereas the amount of CWD, and species composition at the start of the experiment only showed a marginal effect. The early successional fungal community was dominated by two functional groups, humus-decayers and white-rot species, both characterized by a rapid, early colonization and fruit-body formation on the competition-free new substrate. A similar positive response to the new substrate was also observed for the mycorrhizal species in 2006. The high frequency and early appearance of humus-decayers and mycorrhizal species that do not primarily depend upon CWD for their nutrition suggest that their formation of fruiting bodies is limited by substrate availability. Thus some mycorrhizal fungi are apparently rare due to lack of suitable substrate for fruit-body formation. Evidence of dispersal-limitation was observed in 2006. Fomitopsis pinicola, an early colonizer in boreal forests, playing a key role for other wood-inhabiting organisms, colonized significantly more logs in the reserve stands compared with the managed stands. Our data demonstrate that lack of CWD strongly affects both species that depend upon wood for nutrition and species that depend upon wood for fruit-body formation. Thus some species may show an apparent rarity due to lack of suitable substrate. We conclude that creation of CWD appears to be a useful method to maintain or restore fungal diversity in boreal coniferous forests.

Exo-metabolome of some fungal isolates growing on cork-based medium

Fungal species colonize the cork slabs during the manufacturing of cork stoppers process. The most important fungal species that colonizes cork slabs immediately after boiling is Chrysonilia sitophila. Other fungal species may germinate replacing the C. sitophila mycelium on the cork slabs when the slabs’ water activity decreases below 0.9. The possible production of exo-metabolites or volatile compounds by some fungal species during the post-boiling stage was verified in pure cultures using three different media compositions. The results suggest that no deleterious exo-metabolites or mycotoxins are produced by the studied fungal species, both in cork medium or in cork medium added with C. sitophila extracts. However, the addition of C. sitophila extract to the cork medium enhanced the growth of the other studied fungal isolates and altered the respective exo-metabolome profile, leading to the assumption that in their natural habitat, the late cork colonizers like Penicillium spp. and Aspergilus spp. could take advantage from an earlier C. sitophila development as a result of its metabolism and/or mycelium remains. Fungal successions may thus not only be a function of time and substrate, but also they can be dependent of the remains of former colonizers. In fact, the production of the exo-metabolites by the studied fungal isolates suggests that, under the used experimental conditions, they appear to play an important role in fungal interactions amongst the cork mycoflora.

Role of fungi in litter decomposition associated with Casuarina equisetifolia L. plantations in coastal sand dunes, Orissa, India

Seasonal dynamics of soil microfungal populations, their metabolic activity and decomposition of leaf litter were studied in a monoculture plantation of Casuarina equisetifolia L. in coastal sandy belt of Orissa for a period of 2 years (June 2002–May 2004). Fungal succession of litter was also studied. Microbial isolation and soil analysis was performed using standard procedures and decomposition of leaf litter was studied using litter bag technique. Maximum population density was observed in the rainy season followed by winter and lastly summer. Larger microbial populations were encountered in plantation soil compared to barren sand, corresponding with the fluctuation of prevailing temperature, moisture and total organic carbon content. Rates of litter loss and carbon dioxide output followed the same trends as the population density. The annual K value was 0.41. The diversity index varied from 2.87 to 3.71 (Shannon) and 0.356 to 0.885 (Simpson). The similarity index showed that highly decomposed litter (HDL) is more similar to Soil A (barren sand dune) than Soil B (sand dune with monoculture plantation of Casuarina). The introduction of predominantly decomposing microorganisms isolated from samples from the present study could help to increase the nutrient status of these soils. This research will hopefully improve the monitoring and management of decomposing fungi in the study area and highlights their importance in maintaining ecosystem services which could be a valuable tool for better understanding the long-term effects of changes in soil condition of the forest floors in coastal sand dunes of Orissa, India.

Fungal Succession During Fraxinus mandshurica Stump Decomposition in Pine and Broad-leaved Mixed Forest in the Changbai Mountains, China<SUP>*</SUP>

Fungal Succession During Fraxinus mandshurica Stump Decomposition in Pine and Broad-leaved Mixed Forest in the Changbai Mountains, China<SUP>*</SUP>

Nutrient Release and Fungal Succession during Decomposition of Crop Residues in a Shifting Cultivation System

Litter decomposition and nutrient‐release patterns of three dominant crop species were studied in a jhum cultivation system in the humid tropics of northeast India. Crop residues showed an exponential weight‐loss pattern with time. The release of nitrogen (N), phosphorus (P), and potassium (K) followed a similar pattern with weight loss, and their mineralization constants were 3.46–20.47, 2.25–18.41, and 3.82–24.70, respectively. The microbial population and fungal diversity in the decomposing litter varied with incubation time and depended mainly on the litter nutrient concentrations. Overall, the foliage residues of Capsicum frutescens and Eleusine coracana with carbon (C)/N < 25 are of good quality, and they decomposed (t99 = 122 and 333 days, respectively) fastest and released 99% of their nutrients (C, N, and K) between 74 and 263 days of incubation. Thus, all the foliage residues, particularly those of Capsicum frutescens and Eleusine coracana, can play a significant role for soil nutrient enrichment in poorly managed jhum cultivation system.

Can leaf degrading enzymes provide evidence that endophytic fungi becoming saprobes?

The diversity of endophytic and saprobic fungi from Magnolia liliifera leaves were observed and analyzed to establish relationships. Nine endophytes were morphologically and phylogenetically similar to the saprobes; Colletotrichum gloeosporioides, Colletotrichum sp. 2, Corynespora cassiicola, Fusarium sp. 1, Guignardia mangiferae, Leptosphaeria sp., Phomopsis sp. 2, Phomopsis sp. 6, and Phomopsis sp. 10. The endophytes were found to produce the same degrading enzymes as their saprobic counterparts. The isoform of β-mannanase produced from each of endophyte and saprobe counterparts were similar. Fungal succession and enzyme production patterns during leaf decomposition were correlated. The occurrence of saprobes was found to be related to the enzymes that the fungi produce. The study provides further compelling evidence that endophytes can switch lifestyle to saprobes.

Fungal Succession and Decomposition of Acacia mangium Leaf Litters in Health and Ganoderma Attacked Standings

Leaf litters of Acacia mangium play an important functional role in ecosystem, producing sources of nutrients and giving diversity of microorganisms. Understanding the variation in fungal populations in A. mangium forest is important due to the roles of fungi in regulating populations of other organisms and ecosystem processes. For these purposes, the tests were conducted under two years old of health standing (2S) and Ganoderma attacked standing (2G) using litterbag method. Litter weight loss and lignin, cellulose, C, N contents were measured each month during eight months of decomposition, as well as fungal community involved was observed. Litter weight loss and lignin, cellulose, C, N contents were measured each month during eight months of decomposition, as well as fungal community involved was observed. After eight months of decomposition, litter weight losses were low up to 34.61% (k = 0.7/year) in 2S and 30.64% (k = 0.51/year) in 2G, as well as lignin weight losses were low up to 20.05% in 2S and 13.87% in 2G. However, cellulose weight losses were 16.34% in 2S and 14.71% in 2G. In both standings, the numbers of fungal species were 21 and 20 respectively, while the total of fungal populations tends to increase after one month of decomposition and tend to decrease in the last three months. In the first and second months of decomposition fungal species were dominated by genera of Penicillium and Aspergillus and the last three months by Trichoderma, Phialophora , and Pythium.

Determination of fungal succession during municipal solid waste composting using a cloning-based analysis

The microbiota at industrial full-scale composting plants has earlier been fragmentarily studied with molecular methods. Here, fungal communities from different stages of a full-scale and a pilot-scale composting reactors were studied before and after wood ash amendment. The portion of fungal biomass, determined using phospholipid fatty acid analysis, varied between 6.3% and 38.5% in different composting phases. The fungal internal transcribed spacer (ITS) area was cloned and sequenced from 19 samples representing different stages of the composting processes. Altogether 2986 sequenced clones were grouped into 166 phylotypes from which 35% had a close match in the sequence databases. The fungal communities of the samples were related with the measured environmental variables in order to identify phylotypes typical of certain composting conditions. The fungal phylotypes could be grouped into those that dominated the mesophilic low pH initial phases (sequences similar to genera Candida, Pichia and Dipodascaceae) and those found mostly or exclusively in the thermophilic phase (sequences clustering to Thermomyces, Candida and Rhizomucor), but a few were also present throughout the whole process. The community composition was found to vary between suboptimally and optimally operating processes. In addition, there were differences in fungal communities between processes of industrial and pilot scale. The results of this study reveal the fungal diversity with molecular methods in industrial composting process. This is also one of the first studies conducted with samples from an industrial biowaste composting process.

Small-scale Diversity and Succession of Fungi in the Detritusphere of Rye Residues

Transport of litter carbon in the detritusphere might determine fungal abundance and diversity at the small scale. Rye residues were applied to the surface of soil cores with two different water contents and incubated at 10 degrees C for 2 and 12 weeks. Fungal community structure was analysed by constructing clone libraries of 18S rDNA and subsequent sequencing. Litter addition induced fungal succession in the adjacent soil and decreased detectable fungal diversity mainly due to the huge supply of substrates. Ergosterol content and N-acetyl-glucosaminidase activity indicated fungal growth after 2 weeks. Simultaneously, the structure of the fungal community changed, with Mortierellaceae proliferating during the initial phase of litter decomposition. Ergosterol measurements were unable to detect this early fungal growth because Mortierellaceae do not produce ergosterol. In the late phase during decomposition of polymeric substrates, like cellulose and chitin, the fungal community was dominated by Trichocladium asperum. Water content influenced community composition only during the first 2 weeks due to its influence on transport processes in the detritusphere and on competition between fungal species. Our results underline the importance of species identification in understanding decomposition processes in soil.

Dynamics of physicochemical properties and occurrence of fungal fruit bodies during decomposition of coarse woody debris of Fagus crenata

The pattern of changes in the physicochemical properties of wood, and its relationship with fungal succession during decomposition of coarse woody debris (CWD) of beech (Fagus crenata Blume) were investigated. In total, 47 snags and 66 logs were assigned to a system of five decay classes, and were used for analysis of the decomposition process. The decomposition process consists of two phases characterized by their dominant organic chemical constituents. In the first phase (decay class 1–3), acid-unhydrolyzable residue (AUR) and holocellulose decreased simultaneously. In the second phase (decay class 3–5), holocellulose decayed selectively. Fruiting bodies of ten fungal taxa occurred frequently on decomposing logs and/or snags. These fungi were divided into early and late colonizers according to their occurrence during CWD decomposition. The relationship between fungal community composition and the physicochemical properties of CWD was analyzed by canonical correspondence analysis (CCA). According to the Monte Carlo permutation test, decay class, water content, and type of CWD (log or snag) significantly affected the fungal community structure. Our results suggested that white-rot basidiomycetes, especially Omphalotus guepiniformis, play a central role in the simultaneous decomposition of AUR and holocellulose in the first phase of decomposition. On the other hand, fungal taxa occurring in the second phase of decomposition may not be responsible for the decomposition of holocellulose. Three possible mechanisms of holocellulose decomposition and AUR accumulation in the second phase of decomposition are proposed and discussed.

Co-occurrence of Pseudocercospora species and rhytismatalean ascomycetes on maple and camellia in Taiwan

A new species of Pseudocercospora on leaves of Acer albopurpurascens, a maple endemic to Taiwan, is described. The fungus sporulated on leaf spots caused by Vladracula annuliformis (Rhytismatales). Pseudocercospora camelliicola and Coccomyces sinensis on leaves of Camellia cultivars are recorded for the first time for Taiwan and described and illustrated in detail. In contrast to the situation on maple, both fungal species on camellia caused conspicuous breakage of the epidermis during sporulation, which is discussed in connection with fungal succession during leaf litter decomposition.

Fungi associated with Tomicus minor on Pinus sylvestris in Poland and their succession into the sapwood of beetle-infested windblown trees

The study identified and measured frequency of fungal species associated with Tomicus minor (Hart.) on Pinus sylvestris L. (Scots pine) in Poland. Additionally, fungal succession in P. sylvestris sapwood was investigated during a 12 week period following an attack by this insect. Fungi were isolated from five populations of overwintered adult beetles and their galleries with 59 species of fungi being represented among the 2880 cultures obtained. The most frequent species, Ophiostoma canum (Münch) Syd. &amp; P. Syd., Hormonema dematioides Lagerb. &amp; Melin, and Ambrosiella tingens (Lagerb. &amp; Melin) L.R. Batra, appeared to be specifically associated with T. minor. The succesional changes in species composition during a 12 week period following an attack by T. minor were observed. The pattern of fungal succession in P. sylvestris sapwood essentially agreed with a general scheme of fungal succession in tree sapwood infested by bark beetles. Ambrosiella tingens was the first invader of sapwood and occurred most frequently in its deeper layers. Ophiostoma canum, H. dematioides, and other molds were also often isolated from the sapwood; however, they were most common at a depth of 5 mm during the initial phase of fungal colonization. Later, Ophiostoma canum followed A. tingens in the sapwood invasion.

The cultivation bias: different communities of arbuscular mycorrhizal fungi detected in roots from the field, from bait plants transplanted to the field, and from a greenhouse trap experiment

The community composition of arbuscular mycorrhizal fungi (AMF) was investigated in roots of four different plant species (Inula salicina, Medicago sativa, Origanum vulgare, and Bromus erectus) sampled in (1) a plant species-rich calcareous grassland, (2) a bait plant bioassay conducted directly in that grassland, and (3) a greenhouse trap experiment using soil and a transplanted whole plant from that grassland as inoculum. Roots were analyzed by AMF-specific nested polymerase chain reaction, restriction fragment length polymorphism screening, and sequence analyses of rDNA small subunit and internal transcribed spacer regions. The AMF sequences were analyzed phylogenetically and used to define monophyletic phylotypes. Overall, 16 phylotypes from several lineages of AMF were detected. The community composition was strongly influenced by the experimental approach, with additional influence of cultivation duration, substrate, and host plant species in some experiments. Some fungal phylotypes, e.g., GLOM-A3 (Glomus mosseae) and several members of Glomus group B, appeared predominantly in the greenhouse experiment or in bait plants. Thus, these phylotypes can be considered r strategists, rapidly colonizing uncolonized ruderal habitats in early successional stages of the fungal community. In the greenhouse experiment, for instance, G. mosseae was abundant after 3 months, but could not be detected anymore after 10 months. In contrast, other phylotypes as GLOM-A17 (G. badium) and GLOM-A16 were detected almost exclusively in roots sampled from plants naturally growing in the grassland or from bait plants exposed in the field, indicating that they preferentially occur in late successional stages of fungal communities and thus represent the K strategy. The only phylotype found with high frequency in all three experimental approaches was GLOM A-1 (G. intraradices), which is known to be a generalist. These results indicate that, in greenhouse trap experiments, it is difficult to establish a root-colonizing AMF community reflecting the diversity of these fungi in the field roots because fungal succession in such artificial systems may bias the results. However, the field bait plant approach might be a convenient way to study the influence of different environmental factors on AMF community composition directly under the field conditions. For a better understanding of the dynamics of AMF communities, it will be necessary to classify AMF phylotypes and species according to their life history strategies.

Ectomycorrhizal fungal succession in mixed temperate forests

Ectomycorrhizal (ECM) fungal communities of Douglas-fir (Pseudotsuga menziesii) and paper birch (Betula papyrifera) were studied along a chronosequence of forest development after stand-replacing disturbance. Previous studies of ECM succession did not use molecular techniques for fungal identification or lacked replication, and none examined different host species. Four age classes of mixed forests were sampled: 5-, 26-, 65-, and 100-yr-old, including wildfire-origin stands from all four classes and stands of clearcut origin from the youngest two classes. Morphotyping and DNA sequences were used to identify fungi on ECM root tips. ECM fungal diversities were lower in 5-yr-old than in older stands on Douglas-fir, but were similar among age classes on paper birch. Host-specific fungi dominated in 5-yr-old stands, but host generalists were dominant in the oldest two age classes. ECM fungal community compositions were similar in 65- and 100-yr-old stands but differed among all other pairs of age classes. Within the age range studied, site-level ECM fungal diversity reached a plateau by the 26-yr-old age class, while community composition stabilized by the 65-yr-old class. Simple categories such as 'early stage', 'multi stage', and 'late stage' were insufficient to describe fungal species' successional patterns. Rather, ECM fungal succession may be best described in the context of stand development.

Elephant dung decomposition and coprophilous fungi in two habitats of semi-arid Botswana

In order to understand the impact of habitat changes on ecosystem processes caused by increased populations of elephants, elephant dung decomposition was studied in semi-arid Botswana. Dung decomposition rates were studied with and without the presence of arthropods, using pairs of exposed dung and dung enclosed in nylon-mesh bags, respectively. Dung decomposition rates were lower in the absence of arthropods. The rates in the late wet season were higher in the scrubland than in the woodland. In the early dry season, immediately after the wet season, the rates were higher in the woodland than in the scrubland. The difference in decomposition rates between habitats was attributed to microclimatic conditions created by vegetation cover. With regard to fungal succession, Cladosporium cladosporioides and Eurotium brefeldianum occurred only in the late stages of dung decomposition whereas Talaromyces helicus, Cercophora coprophila and Sporormiella minima occurred in all the stages. Although there was no significant difference in Shannon–Weiner fungal species diversity index between habitats, seasons, dung ages and laboratory incubation periods, there were significant differences in fungal community composition between these parameters. Species richness was higher in the late wet season than in the early dry season, indicating the importance of moist conditions for a large diversity of fungal species.

An overview of Cistus ectomycorrhizal fungi

The genus Cistus comprises a group of about 20 shrub species found in wide areas throughout the whole Mediterranean region to the Caucasus. Being one of the main constituents of the Mediterranean-type maquis, this plant genus is peculiar in that it has developed a range of specific adaptations to resist summer drought and frequent disturbance events, such as fire and grazing. In addition, it can form both ectomycorrhizas and arbuscular mycorrhizas. In this paper, we review the information available on the ectomycorrhizal fungi of Cistus across its entire geographic range, as gathered and critically sifted from both published literature sources and personal observations. Although the resulting data matrix was based primarily on accounts of sporocarp inventories in the field, existing knowledge on the features of Cistus natural and synthesized ectomycorrhizas was also included and discussed. In total, more than 200 fungal species belonging to 40 genera have been reported so far to be associated with Cistus. An analysis of the pattern of ectomycorrhizal diversity and host specificity revealed that members of the Cortinariaceae and Russulaceae make the most of both Cistus-aspecific and Cistus-specific mycobionts. Further studies are needed to expand our preliminary knowledge of the mycorrhizal ecology and biology of Cistus and its fungal associates, focusing on topics such as mycobiont diversity, host specificity, fungal succession, mycorrhizal influence on stress tolerance, and impact of disturbances, while comparing the findings with those from other ecosystems.