Pyrene Excimer Emission Research Articles

Fluorescent peptide-based sensors for the ratiometric detection of nanomolar concentration of heparin in aqueous solutions and in serum

New fluorescent peptide-based sensors (1–3) for monitoring heparin in serum sample were synthesized using short peptides (1∼3mer) as a receptor. The peptide-based sensors (2 and 3) showed a sensitive ratiometric response to heparin both in aqueous buffered solution (10mM HEPES, pH 7.4) and in 2% human serum sample by increase of excimer emission of pyrene at 480nm and concomitant decrease of monomer emission of pyrene at 376nm, whereas the peptide-based sensor 1 showed a turn off response only by decrease of monomer emission at 376nm. 2 and 3 exhibited excellent selectivity toward heparin among various anions and competitors of heparin including chondroitin 4-sulfate (ChS) and hyaluronic acid (HA). Peptide-based sensor 3 showed a more sensitive response to heparin than 2. The detection limit of 3 was determined as 36pM (R2=0.998) for heparin in aqueous solution and 204pM (R2=0.999) for heparin in aqueous solutions containing 2% human serum. The peptide-based sensors, 2 and 3 provided a practical and potential tool for the detection and quantification of heparin in real biological samples.

Excimer emission properties on pyrene-labeled protein surface: correlation between emission spectra, ring stacking modes, and flexibilities of pyrene probes.

The excimer emission of pyrene is popularly employed for investigating the association between pyrene-labeled biomolecules or between pyrene-labeled places in a biomolecule. The property of pyrene excimer emission is affected by the fluctuation in ring stacking modes, which originates from the structural flexibilities of pyrene probes and/or of labeled places. Investigations of the excimer emission in terms of dynamics of pyrene stacking modes provide the detailed spatial information between pyrene-labeled places. In order to evaluate the effects of probe structures and fluctuation in pyrene-pyrene association modes on their emission properties on protein surface, three types of pyrene probe with different linker lengths were synthesized and conjugated to two cysteine residues in the A55C/C77S/V169C mutant of adenylate kinase (Adk), an enzyme that shows a structural transition between OPEN and CLOSED forms. In the CLOSED form of Adk labeled by a pyrene probe with a short linker, excimer emission was found to be predominated by the ground-state association of pyrenes. The pyrene stacking structure on the protein surface was successfully determined by an X-ray crystallographic analysis. However, the emission decay in the protein suggested the existence of several stacking orientations in solution. With the increase in the linker length, the effect of fluctuation in pyrene association modes on the spectral properties distinctly emerged at both ground and excited states. The combination of steady-state and time-resolved spectroscopic analyses is useful for differentiation in the origin of the excimer emission, which is essential for precisely understanding the interaction fashions between pyrene-labeled biomolecules.

Nanoconfinement of pyrene in mesostructured silica nanoparticles for trace detection of TNT in the aqueous phase.

This article describes the preparation of pyrene confined mesostructured silica nanoparticles for the trace detection of trinitrotoluene (TNT) in the aqueous phase. Pyrene confined mesostructured silica nanoparticles were prepared using a facile one-pot method where pyrene molecules were first encapsulated in the hydrophobic parts of cetyltrimethylammonium micelles and then silica polymerized around these micelles. The resulting hybrid particles have sizes of around 75 nm with fairly good size distribution. Also, they are highly dispersible and colloidally stable in water. More importantly, they exhibit bright and highly stable pyrene excimer emission. We demonstrated that excimer emission of the particles exhibits a rapid, sensitive and visual quenching response against TNT. The detection limit for TNT was determined to be 12 nM. Furthermore, excimer emission of pyrene shows significantly high selectivity for TNT.

Labeling-free fluorescent detection of DNA hybridization through FRET from pyrene excimer to DNA intercalator SYBR green I

A novel labeling-free fluorescence complex probe has been developed for DNA hybridization detection based on fluorescence resonance energy transfer (FRET) mechanism from pyrene excimer of pyrene-functionalized poly [2-(N, N-dimethylamino) ethyl methacrylate] (PFP) to SYBR Green I (SG, a specific intercalator of double-stranded DNA) in a cost-effective, rapid and simple manner. The complex probe consists of the positively charged PFP, SG and negatively charged single-stranded DNA (ssDNA). Upon adding a complementary strand to the complex probe solution, double-stranded DNA (dsDNA) was formed, followed by the intercalation of SG into dsDNA. The pyrene excimer emission was overlapped with the absorption of SG very well and the electrostatic interactions between PFP and dsDNA kept them in close proximity, enabling efficient FRET from pyrene excimer to SG. The fluorescence of SG in the duplex DNA resulting from FRET can be successfully applied to detect DNA hybridization with high sensitivity for a very low detection limit of 10nM and excellent selectivity for detection of single base pair mismatch.

Protease probes that enable excimer signaling upon scission.

Peptide-based probes that fluoresce upon proteolytic cleavage are invaluable tools for monitoring protease activity. The read-out of protease activity through pyrene excimer signaling would be a valuable asset because the large Stokes shift and the long lifetime of the excimer emission facilitate measurements in autofluorescent media such as blood serum. However, proteolytic cleavage abolishes rather than installs the proximity relationships required for excimer signaling. Herein, we introduce a new probe architecture to enable the switching on of pyrene excimer emission upon proteolytic scission. The method relies on hairpin-structured peptide nucleic acid (PNA)/peptide hybrids with pyrene units and anthraquinone-based quencher residues positioned in a zipper-like arrangement within the PNA stem. The excimer hairpin peptide beacons afforded up to a 50-fold enhancement of the pyrene excimer emission. Time-resolved measurements allowed the detection of matrix metalloprotease 7 in human blood serum.

Pyrene-modified PNAs: Stacking interactions and selective excimer emission in PNA2DNA triplexes.

Pyrene derivatives can be incorporated into nucleic acid analogs in order to obtain switchable probes or supramolecular architectures. In this paper, peptide nucleic acids (PNAs) containing 1 to 3 1-pyreneacetic acid units (PNA1–6) with a sequence with prevalence of pyrimidine bases, complementary to cystic fibrosis W1282X point mutation were synthesized. These compounds showed sequence-selective switch-on of pyrene excimer emission in the presence of target DNA, due to PNA2DNA triplex formation, with stability depending on the number and positioning of the pyrene units along the chain. An increase in triplex stability and a very high mismatch-selectivity, derived from combined stacking and base-pairing interactions, were found for PNA2, bearing two distant pyrene units.

A pyrene based fluorescence approach to study conformation of apolipoprotein E3 in macrophage-generated nascent high density lipoprotein

Apolipoprotein E3 (apoE3) is an anti-atherogenic apolipoprotein with the ability to exist in lipid-free and lipoprotein-associated states. During atherosclerosis, its function in promoting cholesterol efflux from macrophages via the ATP-binding cassette transporter A1 (ABCA1) takes a prominent role, leading to generation of nascent high density lipoprotein (nHDL) particles. The objective of this study is to understand the conformation adopted by apoE3 in macrophage-generated nHDL using a fluorescence spectroscopic approach involving pyrene. Pyrene-labeled recombinant human apoE3 displayed a robust ability to stimulate ABCA1-mediated cholesterol efflux from cholesterol-loaded J774 macrophages (which do not express apoE), comparable to that elicited by unlabeled apoE3. The nHDL recovered from the conditioned medium revealed the presence of apoE3 by immunoblot analysis. A heterogeneous population of nHDL bearing exogenously added apoE3 was generated with particle size varying from ∼12 to ∼19nm in diameter, corresponding to molecular mass of ∼450 to ∼700kDa. The lipid: apoE3 ratio varied from ∼60:1 to 10:1. A significant extent of pyrene excimer emission was noted in nHDL, indicative of spatial proximity between Cys112 on neighboring apoE3 molecules similar to that noted in reconstituted HDL. Cross-linking analysis using Cys-specific cross-linkers revealed the predominant presence of dimers. Taken together the data indicate a double belt arrangement of apoE molecules on nHDL. A similar organization of the C-terminal tail of apoE on nHDL was noted when pyrene-apoEA277C(201–299) was used as the cholesterol acceptor. These studies open up the possibility of using exogenously labeled apoE3 to generate nHDL for structural and conformational analysis.

Formation of Pyrene Excimers in Mesoporous Ormosil Thin Films for Visual Detection of Nitro-explosives

We report the preparation of mesoporous thin films with bright pyrene excimer emission and their application in visual and rapid detection of nitroaromatic explosive vapors. The fluorescent films were produced by physically encapsulating pyrene molecules in the organically modified silica (ormosil) networks which were prepared via a facile template-free sol-gel method. Formation and stability of pyrene excimer emission were investigated in both porous and nonporous ormosil thin films. Excimer emission was significantly brighter and excimer formation ability was more stable in porous films compared to nonporous films. Rapid and selective quenching was observed in the excimer emission against vapors of nitroaromatic molecules; trinitrotoluene (TNT), dinitrotoluene (DNT), and nitrobenzene (NB). Fluorescence quenching of the films can be easily observed under UV light, enabling the naked-eye detection of nitro-explosives. Furthermore, excimer emission signal can be recovered after quenching and the films can be reused at least five times.

Preparation of calcium carbonate microparticles containing organic fluorescent molecules from vaterite

The encapsulation of fluorescent organic molecules into crystalline calcium carbonate was examined using calcium carbonate microcapsule, whose crystalline phase is vaterite as a metastable phase of calcium carbonate. A calcium carbonate microcapsule with impregnated pyrene that is a water insoluble fluorescent molecule was soaked into suitable aqueous solutions to promote the phase transition of vaterite toward calcite as the stable phase of calcium carbonate. When 0.2M calcium chloride solution was used, the largest amount of pyrene (approximately 0.06wt%) was encapsulated into the calcite particle. Pyrene thus included was not eliminated even after thorough washing with THF. The calcite particle thus prepared produced the excimer emission of pyrene by UV irradiation. Rhodamine B was also introduced into calcium carbonate by the immersion of the microcapsule into the aqueous solutions of Rhodamine B. The fluorescence of rhodamine B was observed from the calcium carbonate particles by visible light irradiation. Acetaminophen, a common drug poorly soluble in water, was also included in the calcium carbonate particle by the same procedures as the pyrene encapsulation. As acetaminophen thus encapsulated was released by the dissolution of the calcium carbonate particle in acidic solution, the particle is expected to be applied for a dissolution-triggered drug delivery.

Label-free selective sensing of Pb2+ lead(II) sensors based on the aggregation of a pyrene fluorescent probe

In the present work, we report a label-free fluorescence turn-on approach for the sensitive and selective sensing of Pb2+. Pyrene with one positive charge was used as the fluorescent probe, and thrombin aptamer (TBA), which was a G-rich oligonucleotide, was employed to form G-quadruplex with lead(II). When TBA and Pb2+ were mixed with lead(II) in an aqueous solution, it was folded into a stable G-quadruplex. Subsequently, a single-stranded nucleic acid-specific nuclease S1 was added. The G-quadruplex stabilized by Pb2+ lead(II) had markedly a significant resistant ability to nuclease S1 digestion. However, in the absence of Pb2+ lead(II), no quadruplex or less stable quadruplex was formed and TBA was digested by nuclease S1 in 3 min under the optimized experimental conditions. Finally, pyrene probe was mixed with oligonucleotide in Pb2+ lead(II). Electrostatic interactions between oligonucleotide (a polyanion) and the probe induced the aggregation of the probe, which in turn produced strong emission of the strong pyrene excimer emission. The intensity of the induced excimer emission was directly proportional to the amount of Pb2+ added. Our approach shows good selectivity and sensitivity for the detection of Pb2+ with a limit of detection limit as low as 800 nmol/L.

Pyrene-Fullerene C60 Dyads as Light-Harvesting Antennas

A series of pyrene-fullerene C60 dyads bearing pyrene units (PyFC12, PyFPy, Py2FC12 and PyFN) were synthesized and characterized. Their optical properties were studied by absorption and fluorescence spectroscopies. Dyads were designed in this way because the pyrene moeities act as light-harvesting molecules and are able to produce “monomer” (PyFC12) or excimer emission (PyFPy, Py2FC12 and PyFN). The fluorescence spectra of the dyads exhibited a significant decrease in the amount of pyrene monomer and excimer emission, without the appearance of a new emission band due to fullerene C60. The pyrene fluorescence quenching was found to be almost quantitative, ranging between 96%–99% depending on the construct, which is an indication that energy transfer occurred from one of the excited pyrene species to the fullerene C60.

Self-Association and Nitroaromatic-Induced Deaggregation of Pyrene Substituted Pyridine Amides

The self-assembly features of the bis-pyrene methyl amide functionalized pyridine and benzene "tweezers" 1 and 2 were studied in organic solution and in the solid state. These systems were found to display remarkably different self-association features and optical properties, which was rationalized by control experiments using compounds bearing pyrenemethyl esters, alkyl groups, or a single pyrene substituent (3-6). As dilute solutions in chloroform, tweezers 1 displays both pyrene monomer and excimer emission features reflecting intramolecular contacts between the pyrene subunits. At higher concentrations in chloroform, as well as in the solid state, tweezers 1 self-assembles to form a linear supramolecular polymer. In contrast, tweezers 2 does not interact in an intermolecular fashion and photoexcitation produces emission features characteristic of a pyrene monomer. DFT (density functional theory) and TDDFT (time dependent density functional theory) calculations revealed that the lowest vertical transitions are forbidden and that S1 of 1 is an emissive state. In contrast to 1 and 2, both pyrene-free control systems 5 and 6 were found to form linearly self-assembled supramolecular arrays in the solid state, albeit of differing structure. Upon exposure to trinitrobenzene (TNB), the self-assembled structures formed from 1 undergo deaggregation to form TNB complexes. This change is reflected in both an easily discernible color change and a quenching of the fluorescence emission intensity. Changes in the optical features were also seen in the case of 2. However, notable differences between these two ostensibly similar systems were seen.

Organic-Inorganic Hybrid Mesoporous Materials as Regenerable Sensing Systems for the Recognition of Nitroaromatic Explosives.

Fluorescent organic-inorganic mesoporous hybrid materials have been prepared and characterised, and their behaviour against nitroaromatic explosives have been tested. MCM-41 silica was used as an inorganic scaffold and pyrene (P derivative containing trialkoxysilane moieties), dansyl and fluorescein (D and F derivatives also containing trialkoxysilane groups, respectively) fluorophores have been anchored on hybrid materials by a co-condensation method to obtain a homogenous distribution of dyes into the pores of the support. Six sensing materials have been prepared, of which SP, SD, SF were hydrophilic and SPh, SDh, SFh were hydrophobic. Template-free hydrophilic materials (SP, SD, SF) were obtained after repeated NH4 NO3 /ethanol extractions under temperature from as-synthesised (MP, MD and MF supports, respectively) solids. Hydrophobic materials (SPh, SDh, SFh) were prepared by using excess 1,1,1,3,3,3-hexamethyldisilazane with template-free hydrophilic (SP, SD and SF) materials. The six final materials displayed the typical emission bands of the grafted fluorophores. In particular, SP and SPh show the typical pyrene monomer (370-420 nm) and excimer (430-600 nm) emissions. SD and SDh exhibit the broad dansyl fluorescence band in the 450-600 nm range, whereas solids SF and SFh present sharp fluorescein emission centred at 525 nm. The fluorescent behaviour of the six final materials was tested in the presence of explosives (pentaerythritol tetranitrate (PETN), hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX), nitrobenzene (NB), 1,3,5-trinitrobenzene (TNB), 2,4,6-trinitrotoluene (TNT), 2,4-dinitrotoluene (DNT), 2,4,6-trinitrophenylmethylnitramine (Tetryl) and picric acid (PA)). Only nitroaromatic compounds were able to induce emission quenching. As a general trend, the quenching degree depended on the nature of the final material. The best response was obtained with explosives PA and Tetryl, which were able to significantly quench the emission of the sensing supports. The observed quenching was ascribed to the π-π stacking interactions between the electron-donor fluorophores and the electron-withdrawing nitroaromatic explosives. When using SPh for Tetryl and PA, the limits of detection were 8.5 and 1.4 ppm, respectively, whereas they were 14.4 and 1.2 ppm for SDh. Principal component analysis algorithms were applied to the fluorescence measurements taken with the six hybrid materials and the seven explosives. The obtained score plot showed well-defined clusters for the seven explosives tested. Finally, solid SDh was applied to detect trace amounts of Tetryl in soil samples with good results.

Study on Synergistic Interligand Interactions of Thermally Stable Gold Nanoparticles

Abstract In order to apply gold nanoparticles to the materials for electronic and optical devices, they are required to be tolerant of heat applied in the fabrication processes. In our previous study, novel gold nanoparticles with excellent thermal stability were developed by introducing an amide bond and a condensed ring into the ligand molecules. On the other hand, particle size is a key factor in determining device performance, gaining control over the size is highly advantageous. In this study, a size-increase reaction of the pyrene-containing gold nanoparticle was carried out. The particle size was successfully increased from 2 to ca. 10 nm, without lowering the thermal stability. Furthermore, their interligand interactions could be probed using fluorescence measurements based on the characteristic excimer emission of pyrene. It is suggested that strong π–π stacking occurred around the particles, even after the size-increase reaction, contributing to maintaining the thermal stability.

A quencher-free molecular beacon design based on pyrene excimer fluorescence using pyrene-labeled UNA (unlocked nucleic acid)

A quencher-free molecular beacon capable of generating pyrene excimer fluorescence has been constructed using strategically positioned pyrene-UNA monomers. Hybridization of a fully complementary RNA target was accompanied by a pyrene excimer emission increase of more than 900%, and detection of RNA in living cells was demonstrated.

A Butterfly-Shaped Pyrene Derivative of Cholesterol and Its Uses as a Fluorescent Probe

A butterfly-shaped pyrene derivative of cholesterol, namely, N,N'-(ethane-1,2-diyl)-bis(N-(2-(chol-amino)ethyl)pyrene-1-sulfonamide) (ECPS), has been designed and synthesized. Solvent effect studies revealed that in good solvents such as n-hexane, benzene, and 1,4-dioxane, the profile of the fluorescence emission of the compound is characterized by pyrene monomer emission, but in poor solvent such as water, the emission is dominated by pyrene excimer emission. Quantitatively speaking, the ratio of the excimer emission to monomer emission changes from 50 to 0 when ECPS is dissolved in water and n-hexane, respectively. In contrast, for a commonly used polarity probe pyrene, the ratio of I3/I1 varies only from ~0.6 to ~1.7, where I3 and I1 stand for the intensities of the fluorescence emission at peak 3 and peak 1, respectively. This value suggests that a more powerful discriminating ability of the new compound in polarity sensing. Furthermore, unlike the main components of the compound, pyrene and cholesterol, its main chain is composed of multiple hydrophilic structures, and it is this structure that makes the emission of the compound in organic solvents sensitive to the presence of water. Accordingly, the applicability of the compound in determination of the trace amount of water in some organic solvents was evaluated. As expected, the detection limit of the compound toward water in acetonitrile reaches 7 ppm, a result never reached before. Furthermore, the fluorescence emission of the compound is also sensitive to viscosity variation. Therefore, it is assumed that ECPS may be used both as a polarity probe and a viscosity probe. On the bases of a series of steady-state and time-resolved fluorescence, as well as dynamic light scattering studies, a structural model was proposed to rationalize the fluorescence behavior of the compound in different solvents and its polarity and viscosity probing performances.

Pyrene-Functionalized Nanoparticles: Two Independent Sensors, the Excimer and the Monomer

The high surface-to-volume ratio of nanoparticles has been used to obtain a high local concentration of pyrene units on their periphery, making the formation of both pyrene emissive species possible using amazingly small pyrene concentrations. The sensing properties of model pyrene-functionalized nanoparticles was investigated by using different nitroaromatic compounds [m-nitroaniline and p-nitroaniline] and nitrobenzenes [nitrobenzene, p-nitrotoluene, 2,4-dinitrotoluene, and 2,6-dinitrotoluene]. The hybrid system acts as a dual-fluorescence sensor, in which the decrease of the pyrene emission, induced by the quencher, is hardly reflected in the pyrene excimer emission. The encapsulation capacity of the NPs also plays a key role in their sensitivity to the analyte.

Synthesis and Characterization of Novel Pyrene-Dendronized Porphyrins Exhibiting Efficient Fluorescence Resonance Energy Transfer: Optical and Photophysical Properties

A novel series of pyrene dendronized porphyrins bearing two and four pyrenyl groups (Py(2)-TMEG1 and Py(4)-TMEG2) were successfully synthesized. First and second generation Fréchet type dendrons (Py(2)-G1OH and Py(4)-G2OH) were prepared from 1-pyrenylbutanol and 3,5-dihydroxybenzyl alcohol. These compounds were further linked to a trimesitylphenylporphyrin containing a butyric acid spacer via an esterification reaction to obtain the desired products. Dendrons and dendronized porphyrins were fully characterized by FTIR and (1)H NMR spectroscopy and their molecular weights were determined by matrix-assisted laser desorption ionization time of flight mass spectrometry. Their optical and photophysical properties were studied by absorption and fluorescence spectroscopies. The formation of dynamic excimers was detected in the pyrene-labeled dendrons, with more excimer being produced in the higher generation dendron. The fluorescence spectra of the pyrene dendronized porphyrins exhibited a significant decrease in the amount of pyrene monomer and excimer emission, jointly with the appearance of a new emission band at 661 nm characteristic of porphyrin emission, an indication that fluorescence resonance energy transfer (FRET) occurred from one of the excited pyrene species to the porphyrin. The FRET efficiency was found to be almost quantitative ranging between 97% and 99% depending on the construct. Model Free analysis of the fluorescence decays acquired with the pyrene monomer, excimer, and porphyrin core established that only residual pyrene excimer formation in the dendrons could occur before FRET from the excited pyrene monomer to the ground-state porphyrin core.

A single fluorescent self-assembled monolayer film sensor with discriminatory power

A fluorescent self-assembled monolayer film sensor with discriminatory power was specially designed and prepared by using pyrene as a reporting unit and a oligo(oxyethylene) unit as a hydrophilic spacer. The chemical attachment of pyrene moieties on the surface was verified by contact angle, XPS, UV-vis and fluorescence measurements. The fluorescence responses of the present film to nitroaromatic compounds (NACs) including picric acid, 2,4,6-trinitrotoluene, 2,4-dinitrotoluene, and nitrobenzene were measured. Significantly, the present film exhibits cross-reactive responses to different NACs, and the array of fluorescence variation at four specific wavelengths (peaks for pyrene's monomer emission and excimer emission) provides a distinct recognition pattern for each NAC. The results from principle component analysis reveal that the present film has discriminatory power to identify structurally similar NACs. Moreover, the present film exhibits a high sensitivity, selectivity and reversibility towards NACs, and provides great potential in instrumentation and miniaturization. The use of multiple signals of a single film sensor based on fluorophore's different aggregation states (e.g., pyrene's monomer, distorted excimer, and perfect excimer in the present work) instead of an array of sensor elements provides a novel strategy for developing discriminatory materials and remarkably simplifies the process of identifying similar chemicals.

A photoresponsive fluorescent glycopolymer

Herein we report a new photoresponsive amphiphilic glycopolymer, poly(pyrenylmethyl methacrylate)-b-poly(3-O-4-vinylbenzoyl-D-glucopyranose) (PPy-b-PBG), synthesized via atom transfer radical polymerization (ATRP). The aggregation behaviour of PPy-b-PBG was investigated in dilute aqueous solutions by dynamic light scattering and fluorescence spectroscopy. Formation of spherical aggregates was observed in solutions under controlled conditions due to the amphiphilic nature of the polymer. The presence of strong pyrene excimer emission in aqueous solution indicated the aggregation of pyrene units. Irradiation of these glycosomes with UV light resulted in the photo-solvolysis of 1-pyrenylmethyl esters accompanied by the disruption of the polymer aggregates due to the hydrophilic nature of the residual polymer. The morphology of the polymer aggregates before and after UV irradiation was examined by AFM, SEM and TEM. Encapsulation of hydrophobic Nile Red molecules by the glycosomes resulted in successful fluorescence modulation and UV irradiation resulted in the controlled release of the entrapped dye into water.