Factor In Evolution Research Articles

The Agro-Meteorological Caused Famines as an Evolutionary Factor in the Formation of Civilisation and History: Representative Cases in Europe

Throughout history, food adequacy has been one of the most critical parameters for the survival of human societies. The prevailing atmospheric conditions have always been recognised as the primary and most uncontrolled factors that determine crop production, both quantitatively and qualitatively. However, this is only a part of the effects chain. In order to assess the magnitude of the potential cultural impacts of weather changes in a region, it is crucial to comprehend the underlying mechanism of successive consequences that relate the proximate causes, which in our case are the adverse Agro-Meteorological Conditions (AMC), to their effects on society. The present study focuses on the analysis of the impacts’ mechanism on human societies. Moreover, several characteristic agro-meteorological events that have led to significant changes in European civilisation are presented as case studies. The results highlight the linkage between weather and its impact on history evolution based on Agro-Meteorological Famine (AMF). The proposed concept and its analysis by the schematic presentation are in corroboration with the documented historical events of European history. Moreover, the presented connections between weather, agricultural production, and society revealed the significant contribution of the short-term adverse weather conditions on the mechanism of the human civilisation evolution.

Expert views on the evolution – creation controversy. A survey report

This paper presents sample results from a poll conducted among experts (scientists, philosophers and theologians) regarding the roots of the controversy between the evolutionary account of human origin and religious convictions about creation. It appears that the position one takes in this controversy is influenced much more by one’s opinions than professional background. The controversy is usually only seemingly ‘solved’ at the level of a priori assumptions, erroneous definitions of ‘evolutionism’ and ‘creationism’, semantic viewpoints, epistemological positions and pragmatic choices. The core issues in the controversy (e.g., the role and meaning of chance in random evolutionary factors versus divine providence, or problems stemming from a body-soul dualistic anthropology) are widely neglected and do not play a significant role in deciding one’s views on the matter.
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 Received: 28/08/2020. Reviewed: 30/09/2020. Accepted: 09/11/2020

Evolutionary and Life History Insights into Masculinity and Warfare

In this paper I present, evaluate, and discuss evidence that evolutionary and life history theory can inform our understanding of violence and warfare as well as how these human challenges are influenced by the evolution of male life histories and our perceptions of masculinity. While other anthropological perspectives have interrogated the evolution of war from human and comparative contexts, few have addressed the influence of male life history variables such as age-specific mortality and reproductive constraints on the emergence and conduct of war. Other evolutionary factors worthy of consideration include sexual dimorphism, phenotypic plasticity, and paternity uncertainty. I initially present a contextual examination of the evolutionary science that underlies the engagement of human males with violence and warfare, casting particular attention on the opportunities and constraints of deploying evolutionary and life history theory. I later incorporate other variables including human variation, behavioral endocrinology, and comparative perspectives. In the latter half of this paper I suggest a novel perspective for understanding males, war, and violence by drawing on male-specific patterns of mortality, paternity uncertainty, and the evolution of male aging. While evolutionary and life history theory can provide an informative perspective to understand how males contribute to violence and warfare, there are limitations that set the stage for intellectual partnership opportunities with cultural anthropologists, psychologists, and other social scientists.

Ecological Consequences of Intraspecific Variation in Coevolutionary Systems.

AbstractThe patterns and outcomes of coevolution are expected to depend on intraspecific trait variation. Various evolutionary factors can change this variation in time. As a result, modeling coevolutionary processes solely in terms of mean trait values may not be sufficient; one may need to study the dynamics of the whole trait distribution. Here, we develop a theoretical framework for studying the effects of evolving intraspecific variation in two-species coevolutionary systems. In particular, we build and study mathematical models of competition, exploiter-victim interactions, and mutualism in which the strength of within- and between-species interactions depends on the difference in continuously varying traits between individuals reproducing asexually. We use analytical approximations based on the invasion analysis and supplement them with numerical results. We find that intraspecific variation can be maintained if stabilizing selection is weak in at least one species. When intraspecific variation is maintained under competition or mutualism, coexistence in a stable equilibrium is promoted when between-species interactions mostly happen between individuals similar in trait values. In contrast, in exploiter-victim systems coexistence typically requires strong interactions between dissimilar exploiters and victims. We show that trait distributions can become multimodal. Our approach and results contribute to the understanding of the ecological consequences of intraspecific variation in coevolutionary systems by exploring its effects on population densities and trait distributions.

Structure Elucidation and Functional Studies of a Novel β-hairpin Antimicrobial Peptide from the Marine Polychaeta Capitella teleta.

Endogenous antimicrobial peptides (AMPs) are evolutionary ancient molecular factors of innate immunity that play a key role in host defense. Among the most active and stable under physiological conditions AMPs are the peptides of animal origin that adopt a β-hairpin conformation stabilized by disulfide bridges. In this study, a novel BRICHOS-domain related AMP from the marine polychaeta Capitella teleta, named capitellacin, was produced as the recombinant analogue and investigated. The mature capitellacin exhibits high homology with the known β-hairpin AMP family—tachyplesins and polyphemusins from the horseshoe crabs. The β-hairpin structure of the recombinant capitellacin was proved by CD and NMR spectroscopy. In aqueous solution the peptide exists as monomeric right-handed twisted β-hairpin and its structure does not reveal significant amphipathicity. Moreover, the peptide retains this conformation in membrane environment and incorporates into lipid bilayer. Capitellacin exhibits a strong antimicrobial activity in vitro against a wide panel of bacteria including extensively drug-resistant strains. In contrast to other known β-hairpin AMPs, this peptide acts apparently via non-lytic mechanism at concentrations inhibiting bacterial growth. The molecular mechanism of the peptide antimicrobial action does not seem to be related to the inhibition of bacterial translation therefore other molecular targets may be assumed. The reduced cytotoxicity against human cells and high antibacterial cell selectivity as compared to tachyplesin-1 make it an attractive candidate compound for an anti-infective drug design.

Effect of Culture on Gender Differences in Risky Driver Behavior through Comparative Analysis of 32 Countries

This study examines the effect of culture on gender differences in road user risky behaviors. With the hypothesis that gender differences are not solely because of biological factors, and that the existence and magnitude of differences between gender groups vary according to cultural context, because of differentiated social expectations in relation to gender roles, a secondary analysis was made of the E-Survey of Road Users’ Attitudes (ESRA) 2018 database, comprising 25,459 car drivers (53% male) surveyed by an online questionnaire in 32 countries distributed in eight cultural clusters. The interactions between gender and culture in reported behavior, and personal and social acceptability of four violations were analyzed: drinking and driving, speeding, not wearing a seatbelt, and the use of a cellphone while driving. The results show significant gender differences on risky behaviors and attitudes and complex interactions between gender and culture, with men valuing crash-risk behaviors more than women do in all cultural clusters observed. Interactions between gender and culture are more frequent on declared behaviors and personal acceptability than on perceived social acceptability, and on drinking and driving, and not wearing a seatbelt, more than on speeding and the use of a cellphone while driving. In addition, gender differences are greater in Western countries than in the Global South. These gender differences in road user behaviors, attitudes, and perceptions as results of an interaction between biological and evolutionary factors and cultural and social factors are discussed. These results could be useful to better tailor road safety campaigns and education.

Genetic and Ecological Relationships of Anastrepha ludens (Diptera: Tephritidae) Populations in Southern Mexico.

Simple SummaryThe Mexican fruit fly, Anastrepha ludens, causes extensive damage to important agricultural commodities wherever it is found. Any effort to control or limit the damage caused by this pest requires a thorough understanding of the genetic makeup of the populations found in a particular area. Our study focused on flies found in the Soconusco region of southern Mexico. Flies in this region are typically found infesting different types of fruit trees that are either cultivated or naturally occurring. For our study, we collected male and female flies from four different types of fruit trees in several specific localities in the Mexican state of Chiapas. We analyzed the genetic makeup of a total of 725 flies in an attempt to look for differences that might be associated with the sex of the flies, the specific plants they were found on, or specific localities within the study area. We found a lot of genetic differences in flies from the various collections, but these were not strongly associated with different types of fruit trees or the specific collection site. From this, we concluded that the populations of flies from this entire region were largely similar.Knowledge of the influence of evolutionary factors that promote either the differentiation or cohesion of pest insect populations is critical for the improvement of control strategies. Here, we explore the extent to which genetic differentiation occurs between populations of the Mexican fruit fly, Anastrepha ludens, in association with four plant hosts (Citrus sinensis, C. paradisi, Mangifera indica and Casimiroa edulis) in the Soconusco region of Chiapas (Mexico). Using variants from six enzymatic loci, we obtained measures of genetic diversity for three sample arrangements: (1) by sex per locality, (2) by locality and (3) by host. The extent of genetic differentiation in populations was assessed using the Analyses of Molecular Variance (AMOVA) method for each array of samples, and moderate to high levels of genetic variation were observed between the sexes, as well as among localities and host plants. A Bayesian approach was then used to assess any population structure underlying the genetic data we obtained, but this analysis showed no significant structuring due to locality or host plant. We also considered whether the observed genotypic frequencies in male and females matched those expected under a hypothesis of random mating. Here we found significant deviations from expected genotypic frequencies, suggesting that sexual selection is acting on these populations. Overall, our results indicate that sexual selection, along with the presence of some heterogeneity in environments provided by both geographical factors and availability of host plants, has influenced the evolution of pest populations in this region of Mexico. Implications for area-wide pest management strategies are discussed.

Molecular phylogeny of the phytoparasitic mite family Phytoptidae (Acariformes: Eriophyoidea) identified the female genitalic anatomy as a major macroevolutionary factor and revealed multiple origins of gall induction.

Phytoptidae s.str. is a lineage of eriophyoid mites associated with angiosperms. Based on representative taxon sampling and four gene markers (COI, HSP70, 18S, and 28S), we inferred the molecular phylogeny of this group and performed comparative analyses of cuticle-lined female internal genitalia. Although basal relationships were unclear, several well supported clades were recovered. These clades were supported by geography, host associations, and female genital anatomy, but contradicted the current morphology-based systematics. The monophyly of each of five conventional supraspecific groupings (Fragariocoptes, Phytoptus, Phytoptinae, Sierraphytoptinae, and Sierraphytoptini) is rejected based on a series of statistical tests. Additionally, four morphological characters (the absence of tibial solenidion φ and opisthosomal seta c1, presence of telosomal pseudotagma, and 'morphotype') were found to be homoplasies that cannot be used to confidently delimit supraspecific lineages of phytoptids. However, our molecular topology was highly congruent with female genital characters. Eight molecular clades were unambiguously supported by the shapes and topography of the spermathecal apparatus and genital apodemes. This suggests that the female genital anatomy could be an important factor affecting cladogenesis in Phytoptidae, a conclusion contrasting with the general expectation that host characteristics should be a major macroevolutionary force influencing the evolution of host-specific symbionts. Indeed, despite the high host-specificity, there were no apparent cophylogenetic patterns. Furthermore, we show that gall-inducing ability evolved multiple times in phytoptids. Because gall formation creates nearly instantaneous niche partitioning and the potential loss or reduction of gene flow, we hypothesize that it could be an important evolutionary factor affecting speciation within different host-associated clades of phytoptid mites.

The relation of meiotic behaviour to hybridity, polyploidy and apomixis in the Ranunculus auricomus complex (Ranunculaceae)

BackgroundHybridization and polyploidization are powerful evolutionary factors that are associated with manifold developmental changes in plants such as irregular progression of meiosis and sporogenesis. The emergence of apomixis, which is asexual reproduction via seeds, is supposed to be connected to these factors and was often regarded as an escape from hybrid sterility. However, the functional trigger of apomixis is still unclear. Recently formed di- and polyploid Ranunculus hybrids, as well as their parental species were analysed for their modes of mega- and microsporogenesis by microscopy. Chromosomal configurations during male meiosis were screened for abnormalities. Meiotic and developmental abnormalities were documented qualitatively and collected quantitatively for statistical evaluations.ResultsAllopolyploids showed significantly higher frequencies of erroneous microsporogenesis than homoploid hybrid plants. Among diploids, F2 hybrids had significantly more disturbed meiosis than F1 hybrids and parental plants. Chromosomal aberrations included laggard chromosomes, chromatin bridges and disoriented spindle activities. Failure of megasporogenesis appeared to be much more frequent in than of microsporogenesis is correlated to apomixis onset.ConclusionsResults suggest diverging selective pressures on female and male sporogenesis, with only minor effects of hybridity on microsporogenesis, but fatal effects on the course of megasporogenesis. Hence, pollen development continues without major alterations, while selection will favour apomixis as alternative to the female meiotic pathway. Relation of investigated errors of megasporogenesis with the observed occurrence of apospory in Ranunculus hybrids identifies disturbed female meiosis as potential elicitor of apomixis in order to rescue these plants from hybrid sterility. Male meiotic disturbance appears to be stronger in neopolyploids than in homoploid hybrids, while disturbances of megasporogenesis were not ploidy-dependent.

Positive selection alone is sufficient for whole genome differentiation at the early stage of speciation process in the fall armyworm

BackgroundThe process of speciation involves differentiation of whole genome sequences between a pair of diverging taxa. In the absence of a geographic barrier and in the presence of gene flow, genomic differentiation may occur when the homogenizing effect of recombination is overcome across the whole genome. The fall armyworm is observed as two sympatric strains with different host–plant preferences across the entire habitat. These two strains exhibit a very low level of genetic differentiation across the whole genome, suggesting that genomic differentiation occurred at an early stage of speciation. In this study, we aim at identifying critical evolutionary forces responsible for genomic differentiation in the fall armyworm.ResultsThese two strains exhibit a low level of genomic differentiation (FST = 0.0174), while 99.2% of 200 kb windows have genetically differentiated sequences (FST > 0). We found that the combined effect of mild positive selection and genetic linkage to selectively targeted loci are responsible for the genomic differentiation. However, a single event of very strong positive selection appears not to be responsible for genomic differentiation. The contribution of chromosomal inversions or tight genetic linkage among positively selected loci causing reproductive barriers is not supported by our data. Phylogenetic analysis shows that the genomic differentiation occurred by sub-setting of genetic variants in one strain from the other.ConclusionsFrom these results, we concluded that genomic differentiation may occur at the early stage of a speciation process in the fall armyworm and that mild positive selection targeting many loci alone is sufficient evolutionary force for generating the pattern of genomic differentiation. This genomic differentiation may provide a condition for accelerated genomic differentiation by synergistic effects among linkage disequilibrium generated by following events of positive selection. Our study highlights genomic differentiation as a key evolutionary factor connecting positive selection to divergent selection.

Reinterpreting patterns of variation in human thyroid function: An evolutionary ecology perspective.

Two hundred million people worldwide experience some form of thyroid disorder, with women being especially at risk. However, why human thyroid function varies between populations, individuals, and across the lifespan has attracted little research to date. This limits our ability to evaluate the conditions under which patterns of variation in thyroid function are best understood as 'normal' or 'pathological'. In this review, we aim to spark interest in research aimed at understanding the causes of variation in thyroid phenotypes. We start by assessing the biomedical literature on thyroid imbalance to discuss the validity of existing reference intervals for diagnosis and treatment across individuals and populations. We then propose an evolutionary ecological framework for understanding the phylogenetic, genetic, ecological, developmental, and physiological causes of normal variation in thyroid function. We build on this approach to suggest testable predictions for how environmental challenges interact with individual circumstances to influence the onset of thyroid disorders. We propose that dietary changes, ecological disruptions of co-evolutionary processes during pregnancy and with pathogens, emerging infections, and exacerbated stress responses can contribute to explaining the onset of thyroid diseases. For patients to receive the best personalized care, research into the causes of thyroid variation at multiple levels is needed.

Focused Identification of Germplasm Strategy (FIGS): polishing a rough diamond.

Focused Identification of Germplasm Strategy (FIGS) has been advocated as an efficient approach to predict and harness variation in adaptive traits in genebanks or wild populations of plants. However, a weakness of the current FIGS approach is that it only utilizes a priori knowledge of one evolutionary factor: natural selection. Further optimization is needed to capture elusive traits, and this review shows that nonadaptive evolutionary processes (gene flow and genetic drift) should be incorporated to increase precision. Focusing on plant resistance to insect herbivores, we also note that historic selection pressures can be difficult to disentangle, and provide suggestions for successful mining based on eco-evolutionary theory. We conclude that with such refinement FIGS has high potential for enhancing breeding efforts and hence sustainable plant production.

A SYSTEMATIC REVIEW ON ENHANCED TRANSMISSION AND EFFECTS OF SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS-2: AN INDIAN SCENARIO

The outbreak of severe acute respiratory syndrome coronavirus-2 in Wuhan city of China has taken the entire world to an appalling situation with its detrimental effects on the mankind. Due to the facts on epidemiological and clinical features, it has become evident that the virus comprises several evolutionary factors that enhance its transmissibility and infection. In the absence of specific treatment options, many of the countries have implemented the confinement at varying levels and restrictions to control further infection. In the context, impact of confinement has affected different sectors including economy, social life, environment, health, and education, By virtue of the interrelated mechanism of functioning, these sectors have been ineffective, which, in turn, has affected the normal human lifestyle. This review emphasizes on such social sectors of India, where public life has been facing detrimental effects. It also highlights the facts that are responsible for the enhanced transmission of the virus. The review was initiated with a literature search using PubMed, Google Scholar, EMBASE, and Web of Science, where related keywords were used to collect 259 studies, and 82 of them were finalized based on relevance and information within. It was completed with equal contributions from all the authors in terms of preparing the manuscript.

Multi-Omic Analysis Identifies Epigenetic Evolution in Relapsed Acute Myeloid Leukemia

Introduction: Acute myeloid leukemia (AML) is associated with a poor prognosis even with aggressive treatments including high dose chemotherapy. While most patients enter clinical remission, these remissions are often short-lived leading to chemotherapy-resistant relapsed disease that accounts for the majority of deaths. We undertook a meta-analysis of published datasets consisting of 142 genotyped paired diagnosis-relapse AML samples to understand the genetic evolution of AML between the two disease states. This analysis determined that a plurality of cases exhibited the same mutations at diagnosis and relapse, and that genetically stable clones were associated with an increased probability of relapse. The finding that many cases exhibited no clonal genetic evolution upon relapse, yet exhibited chemotherapy resistance, lead us to hypothesize that epigenetic evolution plays a significant role in AML relapse. Here, our objective was to investigate the epigenetic evolution and cis and trans regulatory elements that correlate with AML relapse. Methods: We identified 27 paired diagnosis and relapse specimens from patients treated at Stanford with high dose chemotherapy regimens. Leukemic blasts, and in some cases leukemia stem cell (LSC)-enriched fractions, were purified by FACS. Cells were then analyzed through a multi-omic platform including genotyping with a myeloid malignancy targeted panel, RNA-seq, and ATAC-seq to obtain a molecular and chromatin accessibility profile of each sample. The resulting data set was analyzed to investigate epigenetic evolution in relapsed AML. Results: Genotyping analysis of banked AML specimens identified a similar pattern of genetic evolution as our meta-analysis, with several samples exhibiting the same mutations at diagnosis and relapse. We used an epigenetic matrix of chromatin accessibility data obtained from purified cell populations within the hematopoietic hierarchy and implemented this with the CIBERSORT algorithm to map the regulatory programs active in diagnosis and relapsed AML blasts. This analysis revealed a general trend of epigenetic states associated with more primitive cells (such as hematopoietic stem and progenitor cells) active at relapse, as opposed to more differentiated myeloid cell programs active at diagnosis. Focusing further on samples with no genetic changes between the two disease states, we observed several samples with substantial epigenetic evolution at relapse, with AML blasts shifting from a more differentiated myeloid cell profile to that of stem and progenitor cells. These changes were associated with a loss of accessibility in PU.1 and CEBPα transcription factor motifs, with a corresponding increase in GATA and RUNX motifs, suggesting epigenetic remodeling contributes to relapse even in the absence of genetic changes. We have additionally identified various categories of relapse samples in our cohort that share similar epigenetic profiles relating to genotype; NPM1 and FLT3 double mutant samples, for example, shared active chromatin accessibility features. Given the key importance of LSCs in AML pathogenesis and their potential role in chemotherapy resistance, we further undertook an analysis of cellular subpopulations enriched for these cells in a subset of our sample cohort. ATAC-seq analysis of CD34+CD38- cell fractions revealed these cells share many epigenetic features between samples, yet also have distinct regulatory programs from those active in leukemia non-stem cells and exhibit similar epigenetic reprogramming between diagnosis and relapse. This analysis further indicates that epigenetic evolution at relapse occurs at the single cell level, rather than reflecting selection of cellular subpopulations at relapse. Ongoing work involves identifying the specific regulatory programs upregulated in relapse samples, and LSCs specifically, to understand how these programs contribute to relapse at the gene regulatory level. Conclusion: Our results indicate a substantial role for epigenetic evolution in AML, with the activation of more primitive stem and progenitor programs upon relapse. We have also identified epigenetic classifications for several relapse samples that correspond to genotype and characterized the regulatory programs associated with relapse. We hope this work will permit a deeper understanding of the evolutionary factors that guide AML relapse. Disclosures Majeti: Zenshine Pharmaceuticals: Membership on an entity's Board of Directors or advisory committees; Coherus BioSciences: Membership on an entity's Board of Directors or advisory committees; CircBio Inc.: Research Funding; BeyondSpring Pharmaceuticals: Membership on an entity's Board of Directors or advisory committees; Stanford University: Patents & Royalties: pending patent application on CD93 CAR ; Forty-Seven Inc.: Divested equity in a private or publicly-traded company in the past 24 months; Kodikaz Therapeutic Solutions Inc.: Membership on an entity's Board of Directors or advisory committees; Gilead Sciences, Inc.: Patents & Royalties: inventor on patents related to CD47 cancer immunotherapy.

Necrotizing pneumonia due to Streptococcus pneumoniae in children during the period of non-systematic use of PCV13 in Catalonia, Spain

BackgroundSome studies have observed an increased incidence of necrotizing pneumonia (NP) in recent years. This might be related to the emergence of non-vaccine S. pneumoniae serotypes after PCV7 introduction although it is suggested that evolutionary factors may have modified the virulence and the interactions of pneumococci. The aim of this study was to clinically and microbiologically define NP in the population served by the three major paediatric hospitals in Barcelona (Catalonia, Spain). MethodsA prospective observational study was conducted in patients <18 years hospitalized due to invasive pneumococcal disease (January 2012–June 2016). Data of confirmed cases of pneumococcal NP (diagnosed by culture or DNA detection and serotyped) were collected. PCV13 was not systematically administered in Catalonia during the study period, but was available in the private market so the vaccination coverage in children increased from 48.2% to 74.5%. Results35 cases of NP were identified. 77.1% of cases were associated with empyema. In the first 4 years, a trend to a decrease in NP incidence was observed (p=0.021), especially in children <5 years (p=0.006). Serotype 3 was responsible for 48.6% of NP cases. Five patients with NP due to serotype 3 were fully vaccinated for their age with PCV13. ConclusionsSerotype 3 has a preeminent role in pneumococcal NP and was associated with all PCV13 vaccination failures. Although in our series the incidence does not seem to be increasing, evolution of pneumococcal NP rates should be monitored after inclusion of PCV13 in the systematic calendar.

Large-scale disease patterns explained by climatic seasonality and host traits.

Understanding factors affecting the distribution of vector-borne diseases in space and across species is of prime importance to conservation ecologists. Identifying the underlying patterns of disease requires a perspective encompassing large spatial scales. However, few studies have investigated disease ecology from a macroecological perspective. Hence, we use a global disease database to uncover worldwide infection patterns using avian malaria (Plasmodium) as a model for vector-borne disease transmission. Using data on 678 bird species from 442 locations, we show that environmental variables likely to synchronize bird and vector abundance are the key factors dictating infection risk for birds. Moreover, direct effects of host traits on exposure risk as well as potential trade-offs in resource allocation were also shown to affect disease susceptibility, with larger bird species being more prone to infection. Our results suggest that considering evolutionary strategies and factors influencing spatial overlap between hosts and vectors is crucial for understanding worldwide patterns of disease transmission success.

Spatial distribution of Poa scaberula (poaceae) along the andes

Mountains support a great diversity of species and habitat types. Grasslands are the dominant landscape in the Andes and play an important ecological role. However, they are threatened by many factors, including climate change and human activities. The spatial distribution of species that compose, and the ecological and evolutionary factors that provide for the spatial biodiversity patterns, are little known. The largest Poa L. (Poaceae) genera are widely diversified and distributed in the Andes. In particular, P. scaberula Hook. f. shows great environmentally mediated phenotypic plasticity, and is distributed from North America to the tip of South America. However, the impact of environmental variables has on the spatial distribution of this species, remain largely unknown. Using high-resolution climatic data, herein we modeled the current suitable habitat for P. scaberula and identified the main climatic variables that best predict its potential distribution. In addition, we assess the species status in the predicted habitats through herbarium data and relate it with species distribution models. The models showed that P. scaberula has a suitable habitat of ca. 162.747 km2 along the Andes and high elevation regions. The most influential variables with a 68.5% contribution to the distribution of the species, particularly high elevation areas, included mean cold hardiness, water vapor pressure and temperature seasonality. The areas of greatest suitability with the highest occurrence of the species were identified geographically by the models. The present study provides useful information that can assist in the identification of areas where the species is most sensitive to different variables, including climate change and human activities and contributes in assessing the conservation status of Andean grassland at a regional scale.

An evolutionary autoencoder for dynamic community detection

Dynamic community detection is significant for controlling and capturing the temporal features of networks. The evolutionary clustering framework provides a temporal smoothness constraint for simultaneously maximizing the clustering quality at the current time step and minimizing the clustering deviation between two successive time steps. Based on this framework, some existing methods, such as the evolutionary spectral clustering and evolutionary nonnegative matrix factorization, aim to look for the low-dimensional representation by mapping reconstruction. However, such reconstruction does not address the nonlinear characteristics of networks. In this paper, we propose a semi-supervised algorithm (sE-Autoencoder) to overcome the effects of nonlinear property on the low-dimensional representation. Our proposed method extends the typical nonlinear reconstruction model to the dynamic network by constructing a temporal matrix. More specifically, the potential community characteristics and the previous clustering, as the prior information, are incorporated into the loss function as a regularization term. Experimental results on synthetic and real-world datasets demonstrate that the proposed method is effective and superior to other methods for dynamic community detection.

Computational Identification of Media Frames: Strengths, Weaknesses, and Opportunities

ABSTRACT With the availability of large volumes of electronic communications data and the increasing sophistication of computational techniques, the development of automated approaches for different kinds of framing analysis is an important goal of researchers. There is as yet no standard method for the “unsupervised” inductive identification of frames based upon the content of articles. Three groups of core approaches underlie a wide range of work in this area, and we compare three techniques based on these approaches against each other and against manual human analysts. The three techniques are a k-means clustering algorithm together with a sophisticated natural language processing (NLP)-based feature selection process; evolutionary factor analysis (EFA), a factor analysis approach; and the structural topic model (STM). We use two datasets – one very focused and one extremely broad – as examples of the kind of frame analysis problems readers may wish to attempt. Even in a highly targeted dataset, we find some distance between the frames generated by computational analysis and those manually produced by our human analysts. The details of each method have a substantial impact on frame quality and interpretation. We find that the STM approach is the most effective for our narrow-scope dataset, but that it returns definite topics, and not frames, when working on our very broad dataset. We also show that we can get results emphasizing different parts of the framing problem by combining parts of different methods as a multi-stage process, rather than viewing available methods as simple plug-and-play models.

Responses to Alteration of Atmospheric Oxygen and Social Environment Suggest Trade-Offs among Growth Rate, Life Span, and Stress Susceptibility in Giant Mealworms (Zophobas morio).

Growth rate, development time, and response to environmental stressors vary tremendously across organisms, suggesting trade-offs that are affected by evolutionary or ecological factors, but such trade-offs are poorly understood. Prior studies using artificially selected lines of Manduca sexta suggest that insects with high growth rates, long development time, and large body size are more sensitive to hypoxic or hyperoxic stresses, such as reactive oxygen species (ROS) production, but the mechanisms and specific life-history associations remain unclear. Here, we manipulated the social environment to differentiate the effects of size, growth rate, and development time on oxygen sensitivity of the giant mealworm, Zophobas morio. Crowding reduced growth rates but yielded larger adults as a result of supernumerary molts and longer development times. The juvenile performance (growth rate, development time, adult mass) of crowd-reared mealworms was less sensitive to variation in atmospheric oxygen than it was for individually reared animals, consistent with the hypothesis that high growth rates are associated with increased sensitivity to ROS. Life span in normoxia was extended by crowd rearing, perhaps due to the larger size and/or increased resources of the larger adults. Life spans of crowd-reared animals were more negatively affected by hypoxia or hyperoxia than life spans of individually reared animals, possibly due to the longer total stress exposure of crowd-reared animals. These data suggest that animals with high growth rates experience a negative trade-off of performance with greater sensitivity to stress during the juvenile phase, while animals with long development times or life spans experience a negative trade-off of greater susceptibility of life span to environmental stress.