Evolutionary Changes In Response Research Articles

Experimental evolution of environmental tolerance, acclimation, and physiological plasticity in a randomly fluctuating environment.

Environmental tolerance curves, representing absolute fitness against the environment, are an empirical assessment of the fundamental niche, and emerge from the phenotypic plasticity of underlying phenotypic traits. Dynamic plastic responses of these traits can lead to acclimation effects, whereby recent past environments impact current fitness. Theory predicts that higher levels of phenotypic plasticity should evolve in environments that fluctuate more predictably, but there have been few experimental tests of these predictions. Specifically, we still lackexperimental evidence for the evolution of acclimation effects in response to environmental predictability. Here, we exposed 25 genetically diverse populations of the halotolerant microalgae Dunaliella salina to different constant salinities, or to randomly fluctuating salinities, for over 200 generations. The fluctuating treatments differed in their autocorrelation, which determines the similarity of subsequent values, and thus environmental predictability. We then measured acclimated tolerance surfaces, mapping population growth rate against past (acclimation) and current (assay) environments. We found that experimental mean and variance in salinity caused the evolution of niche position (optimal salinity) and breadth, with respect to not only current but also past (acclimation) salinity. We also detected weak but significant evidence for evolutionary changes in response to environmental predictability, with higher predictability leading notably to lower optimal salinities and stronger acclimation effect of past environment on current fitness. We further showed that these responses are related to the evolution of plasticity for intracellular glycerol, the major osmoregulatory mechanism in this species. However, the direction of plasticity evolution did not match simple theoretical predictions. Our results underline the need for a more explicit consideration of the dynamics of environmental tolerance and its underlying plastic traits to reach a better understanding of ecology and evolution in fluctuating environments.

Genome-wide analysis reveals allelic variation and chromosome copy number variation in paromomycin-resistant Leishmania donovani.

In the absence of adequate diagnosis and treatment, leishmaniasis remains a major public health concern on a global scale. Drug resistance remains a key obstacle in controlling and eliminating visceral leishmaniasis. The therapeutic gap due to lack of target-specific medicine and vaccine can be minimized by obtaining parasite's genomic information. This study compared whole-genome sequence of paromomycin-resistant parasite (K133PMM) developed through in vitro adaptation and selection with sensitive Leishmania clinical isolate (K133WT). We found a large number of upstream and intergenic gene variations in K133PMM. There were 259 single nucleotide polymorphisms (SNPs), 187 insertion-deletion (InDels), and 546 copy number variations (CNVs) identified. Most of the genomic variations were found in the gene's upstream and non-coding regions. Ploidy estimation revealed chromosome 5 in tetrasomy and 6, 9, and 12 in trisomy, uniquely in K133PMM. These contain the genes for protein degradation, parasite motility, autophagy, cell cycle maintenance, and drug efflux membrane transporters. Furthermore, we also observed reduction in ploidy of chromosomes 15, 20, and 23, in the resistant parasite containing mostly the genes for hypothetical proteins and membrane transporters. We chronicled correlated genomic conversion and aneuploidy in parasites and hypothesize that this led to rapid evolutionary changes in response to drug induced pressure, which causes them to become resistant.

Geographical differences in competitive hierarchy in a native–invasive system

AbstractBiological invasions can create novel competitive interactions and force ecological shifts in both native and invasive species. Anuran tadpoles are able to modify their behaviour, morphology, growth and development to cope with competitive pressure. This plasticity is a good target for natural selection and can drive rapid evolutionary changes in response to novel interactions. Here, we explore changes in plastic responses and fitness of competing invasive and native tadpoles by exposing tadpoles from different locations with contrasting evolutionary histories to the same set of varied competitive conditions. Eggs were collected from one site near the first introduction of the invasive frog (~110 years of coexistence) and from a second site that was invaded recently. We hypothesized less favourable outcomes for the invasive species in long-coexisting populations, where the native competitor might have developed adaptive responses. Most results support the hypothesis. Where the invasion was older, invasive tadpoles exposed to native competitors grew less, developed more slowly and displayed morphologies linked to competitive stress, whereas the developmental stability and canalization of native tadpoles increased. On the whole, the asymmetric competitive relationship thus appeared to approach symmetry after ~35 generations, highlighting a noteworthy example of rapid adaptation after an invasion.

Intersexual differences in density-dependent dispersal and their evolutionary drivers.

Dispersal is well recognized as a major driver of evolutionary processes in local populations. Nevertheless, dispersal abilities should also be perceived as a life-history trait, being subject to evolutionary changes in response to various drivers. Empirical studies investigating these drivers rarely consider that they may influence male and female dispersal differently. The purpose of our study was to document intersexual differences in density-dependent emigration from local habitat patches. As a model system, we used a metapopulation of Maculinea (Phengaris) teleius butterfly, in which densities of both sexes vary greatly throughout the flying season. Following intensive mark-release-recapture surveys, the parameters and predictors of dispersal were analysed with the Virtual Migration model and the multi-state recapture model. The emigration rate in males was substantially higher in the early season, especially at smaller habitat patches. With the proportion of females increasing with the season progression, males became reluctant to emigrate from their natal patches. In turn, higher female emigration in the later part of the season was most strongly associated with female tendency to reduce intraspecific competition experienced by their offspring. Our findings provide evidence for the impact of reproductive strategies on dispersal in both sexes. The difference in reproductive strategies of males and females explains sex-biased dispersal in different parts of the season, which carries important implications for metapopulation functioning.

Mechanistic, ecological, and evolutionary consequences of artificial light at night for insects: review and prospective

AbstractThe alternation of light and dark periods on a daily or seasonal time scale is of utmost importance for the synchronization of physiological and behavioral processes in the environment. For the last 2 decades, artificial light at night (ALAN) has strongly increased worldwide, disrupting the photoperiod and its related physiological processes, and impacting the survival and reproduction of wild animals. ALAN is now considered as a major concern for biodiversity and human health. Here, we present why insects are relevant biological models to investigate the impact of ALAN. First the phenotypic responses to ALAN and their underpinning mechanisms are reviewed. The consequences for population dynamics, and the community composition and functioning are described in the second part. Because ALAN provides new and widespread selective pressure, we inventory evolutionary changes in response to this anthropogenic change. Finally, we identify promising future avenues, focusing on the necessity of understanding evolutionary processes that could help stakeholders consider darkness as a resource to preserve biodiversity as well as numerous ecosystem services in which insects are involved.

Human-mediated evolution in a threatened species? Juvenile life-history changes in Snake River salmon.

Evaluations of human impacts on Earth's ecosystems often ignore evolutionary changes in response to altered selective regimes. Freshwater habitats for Snake River fall Chinook salmon (SRFCS), a threatened species in the US, have been dramatically changed by hydropower development and other watershed modifications. Associated biological changes include a shift in juvenile life history: Historically essentially 100% of juveniles migrated to sea as subyearlings, but a substantial fraction have migrated as yearlings in recent years. In contemplating future management actions for this species should major Snake River dams ever be removed (as many have proposed), it will be important to understand whether evolution is at least partially responsible for this life‐history change. We hypothesized that if this trait is genetically based, parents who migrated to sea as subyearlings should produce faster‐growing offspring that would be more likely to reach a size threshold to migrate to sea in their first year. We tested this with phenotypic data for over 2,600 juvenile SRFCS that were genetically matched to parents of hatchery and natural origin. Three lines of evidence supported our hypothesis: (i) the animal model estimated substantial heritability for juvenile growth rate for three consecutive cohorts; (ii) linear modeling showed an association between juvenile life history of parents and offspring growth rate; and (iii) faster‐growing juveniles migrated at greater speeds, as expected if they were more likely to be heading to sea. Surprisingly, we also found that parents reared a full year in a hatchery produced the fastest growing offspring of all—apparently an example of cross‐generational plasticity associated with artificial propagation. We suggest that SRFCS is an example of a potentially large class of species that can be considered to be “anthro‐evolutionary”—signifying those whose evolutionary trajectories have been profoundly shaped by altered selective regimes in human‐dominated landscapes.

Identification of two lineages of host-associated eriophyoid mites predisposed to different levels of host diversification

Herbivorous arthropods can diversify as a consequence of evolutionary changes in response to their plant hosts. Current patterns of host association of herbivores are likely to reflect a long evolutionary history of herbivore-plant co-evolution. Here, we used molecular phylogenetics to track the evolutionary history of host shifts and diversification of 66 eriophyoid mites (Acari, Eriophyoidea), and linked past patterns of evolutionary diversification to more recent patterns of divergence by tracking population genetic variation in 13 of the eriophyoid mite species feeding on different gymnosperm hosts. This allowed us to explore the relationship between a past history of diversification and the current potential of mites to undergo host range shifts. We found that population-level diversity across gymnosperm hosts as measured by 28S rRNA markers was greater in species from the mite clade that had radiated across evolutionary time to utilize a variety of hosts including angiosperms, compared to species from the clade that has remained restricted to ancestral gymnosperm hosts. Species from the radiated clade exhibited higher variation in host use. Lineages of mites that have in the past been able to radiate and adapt to diverse plants may therefore be predisposed to continue their expansion on new hosts, although additional clades need to be tested.

A genetic perspective on rapid evolution in cane toads (Rhinella marina).

The process of biological invasion exposes a species to novel pressures, in terms of both the environments it encounters and the evolutionary consequences of range expansion. Several invaders have been shown to exhibit rapid evolutionary changes in response to those pressures, thus providing robust opportunities to clarify the processes at work during rapid phenotypic transitions. The accelerating pace of invasion of cane toads (Rhinella marina) in tropical Australia during its 80-year history has been well characterized at the phenotypic level, including common-garden experiments that demonstrate heritability of several dispersal-relevant traits. Individuals from the invasion front (and their progeny) show distinctive changes in morphology, physiology and behaviour that, in combination, result in far more rapid dispersal than is true of conspecifics from long-colonized areas. The extensive body of work on cane toad ecology enables us to place into context studies of the genetic basis of these traits. Our analyses of differential gene expression from toads from both ends of this invasion-history transect reveal substantial upregulation of many genes, notably those involved in metabolism and cellular repair. Clearly, then, the dramatically rapid phenotypic evolution of cane toads in Australia has been accompanied by substantial shifts in gene expression, suggesting that this system is well suited to investigating the genetic underpinnings of invasiveness.

Rapid evolution and the potential for evolutionary rescue in land snails

The role of evolutionary rescue, i.e. adaptive evolution prolonging the persistence of populations declining under environmental stress, has become the focus of intensive research. Sufficiently rapid adaptation is the basis of evolutionary rescue. Recent studies have shown that land snails are capable of adaptive changes within a few decades or an even shorter time. These changes have concerned shell colour, shape and size, and occurred under selective pressures including climatic shifts and impacts of introduced species. Selection coefficients reached up to 0.5 and evolutionary rates up to 0.3 kilodarwin. Land snails are among the most threatened groups of organisms worldwide. Evolutionary changes in response to habitat deterioration might assist efforts to protect their populations. However, threatened species often live in small, isolated populations and the main threats to their persistence, habitat destruction and introductions of alien predators and competitors, are usually drastic and abrupt. Unaided, such species are not likely to be rescued by adaptation. On the other hand, evolutionary change may prevent common species from becoming uncommon; declines in species that until recently were widespread and common are a growing conservation concern. Compared with theoretical models and laboratory studies, little is known about evolutionary rescue in the wild. Practical problems besetting such studies in natural populations might be easier to overcome in land snails than in many other organisms and thus studies on land snails could be relevant to biodiversity as a whole.

Climate change and timing of avian breeding and migration: evolutionary versus plastic changes.

There are multiple observations around the globe showing that in many avian species, both the timing of migration and breeding have advanced, due to warmer springs. Here, we review the literature to disentangle the actions of evolutionary changes in response to selection induced by climate change versus changes due to individual plasticity, that is, the capacity of an individual to adjust its phenology to environmental variables. Within the abundant literature on climate change effects on bird phenology, only a small fraction of studies are based on individual data, yet individual data are required to quantify the relative importance of plastic versus evolutionary responses. While plasticity seems common and often adaptive, no study so far has provided direct evidence for an evolutionary response of bird phenology to current climate change. This assessment leads us to notice the alarming lack of tests for microevolutionary changes in bird phenology in response to climate change, in contrast with the abundant claims on this issue. In short, at present we cannot draw reliable conclusions on the processes underlying the observed patterns of advanced phenology in birds. Rapid improvements in techniques for gathering and analysing individual data offer exciting possibilities that should encourage research activity to fill this knowledge gap.

Evolutionary indirect effects of biological invasions

Just as ecological indirect effects can have a wide range of consequences for community structure and ecosystem function, theory suggests that evolutionary indirect effects can also influence community dynamics and the outcome of species interactions. There is little empirical evidence documenting such effects, however. Here, I use a multi-generation selection experiment in the field to investigate: (1) how the exotic plant Medicago polymorpha and the exotic insect herbivore Hypera brunneipennis affect the evolution of anti-herbivore resistance traits in the native plant Lotus wrangelianus and (2) how observed Lotus evolutionary responses to Hypera alter interactions between Lotus and other members of the herbivore community. In one of two study populations, I document rapid evolutionary changes in Lotus resistance to Hypera in response to insecticide treatments that experimentally reduced Hypera abundance, and in response to Medicago-removal treatments that also reduced Hypera abundance. These evolutionary changes in response to Hypera result in reduced attack by aphids. Thus, an evolutionary change caused by one herbivore species alters interactions with other herbivore taxa, an example of an eco-evolutionary feedback. Given that many traits mediate interactions with multiple species, the effects of evolutionary changes in response to one key biotic selective agent may often cascade through interaction webs to influence additional community members.

The evolution of farnesoid X, vitamin D, and pregnane X receptors: insights from the green-spotted pufferfish (Tetraodon nigriviridis) and other non-mammalian species

BackgroundThe farnesoid X receptor (FXR), pregnane X receptor (PXR), and vitamin D receptor (VDR) are three closely related nuclear hormone receptors in the NR1H and 1I subfamilies that share the property of being activated by bile salts. Bile salts vary significantly in structure across vertebrate species, suggesting that receptors binding these molecules may show adaptive evolutionary changes in response. We have previously shown that FXRs from the sea lamprey (Petromyzon marinus) and zebrafish (Danio rerio) are activated by planar bile alcohols found in these two species. In this report, we characterize FXR, PXR, and VDR from the green-spotted pufferfish (Tetraodon nigriviridis), an actinopterygian fish that unlike the zebrafish has a bile salt profile similar to humans. We utilize homology modelling, docking, and pharmacophore studies to understand the structural features of the Tetraodon receptors.ResultsTetraodon FXR has a ligand selectivity profile very similar to human FXR, with strong activation by the synthetic ligand GW4064 and by the primary bile acid chenodeoxycholic acid. Homology modelling and docking studies suggest a ligand-binding pocket architecture more similar to human and rat FXRs than to lamprey or zebrafish FXRs. Tetraodon PXR was activated by a variety of bile acids and steroids, although not by the larger synthetic ligands that activate human PXR such as rifampicin. Homology modelling predicts a larger ligand-binding cavity than zebrafish PXR. We also demonstrate that VDRs from the pufferfish and Japanese medaka were activated by small secondary bile acids such as lithocholic acid, whereas the African clawed frog VDR was not.ConclusionsOur studies provide further evidence of the relationship between both FXR, PXR, and VDR ligand selectivity and cross-species variation in bile salt profiles. Zebrafish and green-spotted pufferfish provide a clear contrast in having markedly different primary bile salt profiles (planar bile alcohols for zebrafish and sterically bent bile acids for the pufferfish) and receptor selectivity that matches these differences in endogenous ligands. Our observations to date present an integrated picture of the co-evolution of bile salt structure and changes in the binding pockets of three nuclear hormone receptors across the species studied.

DIRECT AND INDIRECT EFFECTS OF CO2, NITROGEN, AND COMMUNITY DIVERSITY ON PLANT–ENEMY INTERACTIONS

Resource abundance and plant diversity are two predominant factors hypothesized to influence the amount of damage plants receive from natural enemies. Many impacts of these environmental variables on plant damage are likely indirect and result because both resource availability and diversity can influence plant traits associated with attractiveness to herbivores or susceptibility to pathogens. We used a long-term, manipulative field experiment to investigate how carbon dioxide (CO2) enrichment, nitrogen (N) fertilization, and plant community diversity affect plant traits and the amount of herbivore and pathogen damage experienced by the common prairie legume Lespedeza capitata. We detected little evidence that CO2 or N affected plant traits; however, plants growing in high-diversity treatments (polycultures) were taller, were less pubescent, and produced thinner leaves (higher specific leaf area). Interestingly, we also detected little evidence that CO2 or N affect damage. Plants growing in polycultures compared to monocultures, however, experienced a fivefold increase in damage from generalist herbivores, 64% less damage from specialist herbivores, and 91% less damage from pathogens. Moreover, within diversity treatments, damage by generalist herbivores was negatively correlated with pubescence and often was positively correlated with plant height, while damage by specialist herbivores typically was positively correlated with pubescence and negatively associated with height. These patterns are consistent with changes in plant traits driving differences in herbivory between diversity treatments. In contrast, changes in measured plant traits did not explain the difference in disease incidence between monocultures and polycultures. In summary, our data provide little evidence that CO2 or N supply alter damage from natural enemies. By contrast, plants grown in monocultures experienced greater specialist herbivore and pathogen damage but less generalist herbivore damage than plants grown in diverse communities. Part of this diversity effect was mediated by changes in plant traits, many of which likely are plastic responses to diversity treatments, but some of which may be the result of evolutionary changes in response to these long-term experimental manipulations.

Perennial challenges and opportunities

Perennial challenges and opportunities

A Review of the Biology of Gambusia affinis and G. holbrooki

Eastern and Western Gambusia (i.e., Gambusia holbrooki and G. affinis, respectively) are considered together here because these two fish species are very closely related, similar in appearance, similar in biology and often confused. Widely divergent attitudes have developed with regard to these fish with some viewing them as being highly beneficial to humans through controlling mosquitoes and the diseases they harbor, and others expressing concern about the negative impacts that these fish may have on other species with which they interact. Because of the widespread distribution, high levels of abundance, ease of capture and captive maintenance, and divergent attitudes, a very large and diffuse literature has developed with regard to these species. In fact, few fish species have been studied as much as or more than these two species combined. There has, however, been no comprehensive review of their biology published to date. As it is not possible to provide a comprehensive review of Gambusia biology in one reasonably sized document, I provide here a review of aspects of their biology at the level of species and individual. In another review I focused instead on the levels of population and species communities and consider the impacts that these fish have on mosquitoes and other organisms (Pyke, unpublished). As would be expected of such widespread and abundant species, Gambusia affinis and G. holbrooki are clearly very tolerant, adaptable and variable in their biology, at both an individual and population level. Both individuals and populations can tolerate, and often thrive within, a wide range of conditions and the abilities of individuals to do this are enhanced if they have time to acclimate to any changes. Populations can adapt through genetic or evolutionary changes in response to conditions that vary in space or time, and there is significant genetic variation within and between populations.

Genetic variation in the life-history traits of Epiphyas postvittana: population structure and local adaptation

The light brown apple moth, Epiphyas postvittana (Walker) shows high intraspecific variability in morphological, physiological, demographic and behavioural characters. To gain insight into the extent of adaptation and evolutionary changes in response to environmental heterogeneity in this species, quantitative genetic analyses of life-history variation were conducted for two natural populations under two thermal conditions (23°C and 28°C). Paternal half-sib heritability and genetic correlation in six life-history traits (i.e. development time, adult body weight, adult lifespan, age at first reproduction, the number of eggs laid during the first 5 days after emergence, and total fecundity) were compared. Significant heritabilities were shown consistently in development time; this is also true for adult body weight, except for the Canberra population at 23°C. However, neither population differences nor the effect of temperature were statistically detectable for any of these heritabilities, confirming the genetically determined flexibility. Positive genetic correlations between development time and adult body weight, and negative genetic correlations between the number of eggs laid during the first 5 days and adult lifespan were present for these populations at both temperatures, indicating the presence of genetic constraints. Pairwise comparisons of genetic correlations revealed the heterogeneity of the two populations and across temperatures. These results suggest that the structure of genetic covariance might have changed significantly during the divergence of natural populations and in response to the alteration of environmental conditions in E. postvittana.

Evolutionary consequences of habitat fragmentation in a localized butterfly

1. Theoretical studies of the costs and benefits of migration predict that evolutionary changes in dispersal traits may take place in response to habitat fragmentation. 2. For the butterfly Plebejus argus, we investigated five morphological characters potentially associated with flight ability, in locations that varied in level of habitat fragmentation. The traits were: total mass, relative thorax mass (containing flight muscle), relative abdomen mass (containing reproductive organs), relative wing area and wing aspect ratio. All characters were measured on individuals reared in a common environment. 3. Morphology was related to the level of habitat fragmentation in both limestone and heathland habitats. Total mass increased with decreasing heathland habitat area (over the range 13 000–10 ha). Relative allocation to the thorax increased, while allocation to the abdomen decreased, with declining limestone habitat area (over the range 3·5–0·2 ha). Morphological characters were not significantly correlated with habitat isolation. 4. Significant family effects for total mass, relative thorax mass, relative abdomen mass and (for females only) relative wing area indicate that these traits may have a heritable component, and therefore have the potential to respond to selection acting on flight ability. 5. We suggest that evolutionary changes in life history traits are taking place in response to changes in landscape structure: in P. argus, these traits may be influenced by the effects of mate‐location strategy on emigration rates. Specific changes in traits can be complex, and may vary among species and populations. 6. P. argus had a 50% chance of occurring in heathland fragments of 33 ha, and was present on all heathlands above 50 ha, but population systems may not yet have achieved equilibrium. P. argus is unlikely to undertake major evolutionary changes in response to reduced habitat area in heathlands > 50 ha. Extinctions from smaller heathlands can be explained most plausibly by population/vegetation dynamics. Therefore, evolutionary changes in morphology may be more likely to be symptomatic of populations with altered costs and benefits of migration, rather than to be a direct cause of extinction.

Online access to weather satellite imagery through the World Wide Web

Both global area coverage (GAC) and high-resolution picture transmission (HRPT) data from the Advanced Very High Resolution Radiometer (AVHRR) are made available to Internet users through an online data access system. Older GOES-7 data are also available. Created as a data system for NASA's future Earth Observing System Data and Information System (EOSDIS), this testbed provides an opportunity to test both the technical requirements of an online data system and the different ways in which the general user community would employ such a system. Initiated in December 1991, the basic data system experienced five major evolutionary changes in response to user requests and requirements. Features added with these changes were the addition of online browse, user subsetting, dynamic image processing/navigation, a stand-alone data storage system, and movement from an X-windows graphical user interface (GUI) to a World Wide Web (WWW) interface. Over its lifetime, the system has had as many as 2500 registered users. The system on the WWW has had over 2500 hits since October 1995. Many of these hits are by casual users that only take the GIF images directly from the interface screens and do not specifically order digital data. Still, there is a consistent stream of users ordering the navigated image data and related products (maps and so forth). The authors have recently added a real-time, seven-day, northwestern United States normalized difference vegetation index (NDVI) composite that has generated considerable interest.

On-line Access to Weather Satellite Imagery and Image Manipulation Software

Advanced Very High Resolution Radiometer and Geostationary Operational Environmental Satellite Imagery, received by antennas located at the University of Colorado, are made available to the Internet users through an on-line data access system. Created as a 'test bed' data system for the National Aeronautics and Space Administration's future Earth Observing System Data and Information System, this test bed provides an opportunity to test both the technical requirements of an on-line data system and the different ways in which the general user community would employ such a system. Initiated in December 1991, the basic data system experienced four major evolutionary changes in response to user requests and requirements. Features added with these changes were the addition of on-line browse, user subsetting, and dynamic image processing/navigation. Over its lifetime the system has grown to a maximum of over 2500 registered users, and after losing many of these users due to hardware changes, the system is once again growing with its own independent mass storage system.