Evidence For Long-distance Dispersal Research Articles

First descriptions of the seasonal habitat use and residency of scalloped hammerhead (Sphyrna lewini) and Galapagos sharks (Carcharhinus galapagensis) at a coastal seamount off Japan

BackgroundThe Northwestern Pacific is a data-poor region for studies into the movements and habitat use of open ocean and pelagic sharks. However, this region experiences considerable pressure from commercial fishing. Therefore, shark movement data from this region carry significant implications for conservation and management, particularly for threatened species. Here, we provide the first data on seasonal residency and movements of scalloped hammerhead (Sphyrna lewini) and Galapagos sharks (Carcharhinus galapagensis), using acoustic and satellite telemetry, and dive logbooks, off Japan.ResultsEight female sharks, four of each species, were tagged around a coastal seamount off southeastern Japan (Mikomoto Island) in August 2015, and monitored for a period of up to 363 days using an array of six receivers around the island. Analyses of the more abundant scalloped hammerhead acoustic data suggest high seasonal residency predominantly from August to November associated with lower chlorophyll-a concentrations, before sharks then leave the island and return the following summer. Residency for scalloped hammerhead sharks were highest among those receivers closest to the Kuroshio Current, which produces strong coastal upwelling, however SST was not found to be predictive of occurrence at Mikomoto. Shark presence was corroborated by analysis of dive-log data from a local ecotourism operator. We also produced two unique satellite tracks, whereby a scalloped hammerhead exhibited a 200-km dispersal into a coastal embayment west of the tagging location and a Galapagos shark migrated over 800 km offshore into the high seas.ConclusionThis study provided some of the first behavioral and movement data for scalloped hammerhead and Galapagos sharks in Japan. Our findings suggest varying spatial and temporal visitation of two shark species to a coastal seamount, underscored by some degree of seasonal residency and site fidelity and linked, for scalloped hammerhead sharks at least, to varying productivity. Furthermore, we provided preliminary evidence for long-distance dispersal of these species, and some site fidelity to seamounts in the region. This study highlights the importance of describing shark movements to aid in filling critical data gaps for poorly understood, endemic populations of threatened species.

Whence Came These Plants Most Foul? Phylogenomics and Biogeography of Lowiaceae (Zingiberales)

Lowiaceae (order Zingiberales) is a small family of forest herbs in Southeast Asia. All species belong to the genus Orchidantha. They are known for possessing orchid-like flowers that are smelly, apparently mimicking dead animals, feces, or mushrooms. Little is known of the biogeographic patterns or character evolution of the family. We sampled the family extensively, including many recently discovered species, and reconstructed the phylogeny of the family using HybSeq with Lowiaceae-specific RNA baits. Our phylogenetic reconstructions confirm that the family is most closely related to Strelitziaceae, and that species with dark, foul-smelling flowers form a grade in which a clade of species with paler flowers are embedded. The pale-flowered species produce a distinct odor, resembling edible mushrooms. Apart from a single species, the species from Borneo form a clade, and the same is true for Indochinese species. The remaining species form a more widespread clade. A biogeographic analysis shows that the distribution of Lowiaceae can explained by vicariance and gradual dispersal from a shared ancestral range of Borneo and Indochina. There is no evidence of long-distance dispersal, only a later extension in distribution to Peninsular Malaysia which coincides with the presence of a land bridge. Different directions of spread are possible, but none require long-distance dispersal. The results are consistent with the geological history of Southeast Asia. In particular, the relatively early isolation between Indochina and Borneo could be explained by the presence of a sea barrier that developed 10–15 MYA, and the continuous movement of plant species between Borneo and Peninsular Malaysia could be explained by a land bridge that existed until c. 5 MYA. The lack of an extensive land bridge with a suitable habitat may explain the absence of this genus from Sumatra and other Indonesian islands aside from Borneo. The strict reliance on a continuous habitat for the range expansion of Lowiaceae can be explained by their fruits and seeds, which lack obvious adaptations for long-distance dispersal. The inability to disperse to new areas may also explain why the extant species have very restricted distributions.

Globally rare oceanic-montane liverworts with disjunct distributions: evidence for long-distance dispersal

Disjunct distributions in bryophytes are well known, but when it comes to the mechanisms that have shaped these distributions, especially for apparently sterile species, the historical processes leading to inter-continental disjunctions remain enigmatic. In this study, we developed microsatellite markers to investigate the spatial distribution and extent of genotypic diversity of 147 Anastrophyllum alpinum samples collected from three populations each in Nepal and Scotland (UK). For a more general insight into genetic differences, sequence divergence in A. alpinum and eight other globally rare and disjunct oceanic-montane liverworts was also assessed. A nested allele distribution of Scottish populations of A. alpinum within the allele range of the Nepalese populations, and lower levels of genetic diversity within Scottish samples indicate that the Scottish populations likely have their origins in the Sino-Himalaya. The evidence for long-distance dispersal was supported by a lack of sequence divergence in chloroplast DNA between Scottish and Nepalese populations, with only a single substitution detected from 5160 bp of plastid sequence. Low levels of sequence divergence were also detected in species with similar distributions. While Scottish populations of A. alpinum do not appear to produce spores, they do still harbour a considerable genetic diversity. This indicates that sexual reproduction has been important at some point in their history. However, the current absence of evidence for sexual reproduction needs to be taken into account when designing conservation actions for these montane species, to ensure population maintenance and ability to track suitable climate and habitat space.

Genomes reveal genetic diversity of Piscine orthoreovirus in farmed and free-ranging salmonids from Canada and USA

Piscine orthoreovirus (PRV-1) is a segmented RNA virus, which is commonly found in salmonids in the Atlantic and Pacific Oceans. PRV-1 causes the heart and skeletal muscle inflammation disease in Atlantic salmon and is associated with several other disease conditions. Previous phylogenetic studies of genome segment 1 (S1) identified four main genogroups of PRV-1 (S1 genogroups I–IV). The goal of the present study was to use Bayesian phylogenetic inference to expand our understanding of the spatial, temporal, and host patterns of PRV-1 from the waters of the northeast Pacific. To that end, we determined the coding genome sequences of fourteen PRV-1 samples that were selected to improve our knowledge of genetic diversity across a broader temporal, geographic, and host range, including the first reported genome sequences from the northwest Atlantic (Eastern Canada). Nucleotide and amino acid sequences of the concatenated genomes and their individual segments revealed that established sequences from the northeast Pacific were monophyletic in all analyses. Bayesian inference phylogenetic trees of S1 sequences using BEAST and MrBayes also found that sequences from the northeast Pacific grouped separately from sequences from other areas. One PRV-1 sample (WCAN_BC17_AS_2017) from an escaped Atlantic salmon, collected in British Columbia but derived from Icelandic broodstock, grouped with other S1 sequences from Iceland. Our concatenated genome and S1 analysis demonstrated that PRV-1 from the northeast Pacific is genetically distinct but descended from PRV-1 from the North Atlantic. However, the analyses were inconclusive as to the timing and exact source of introduction into the northeast Pacific, either from eastern North America or from European waters of the North Atlantic. There was no evidence that PRV-1 was evolving differently between free-ranging Pacific Salmon and farmed Atlantic Salmon. The northeast Pacific PRV-1 sequences fall within genogroup II based on the classification of Garseth, Ekrem, and Biering (Garseth, A. H., Ekrem, T., and Biering, E. (2013) ‘Phylogenetic Evidence of Long Distance Dispersal and Transmission of Piscine Reovirus (PRV) between Farmed and Wild Atlantic Salmon’, PLoS One, 8: e82202.), which also includes North Atlantic sequences from Eastern Canada, Iceland, and Norway. The additional full-genome sequences herein strengthen our understanding of phylogeographical patterns related to the northeast Pacific, but a more balanced representation of full PRV-1 genomes from across its range, as well additional sequencing of archived samples, is still needed to better understand global relationships including potential transmission links among regions.

A New Zealand Storm Petrel Fregetta maoriana off Gau Island, Fiji, in May 2017

Summary. We document a sighting of the Critically Endangered New Zealand Storm Petrel Fregetta maoriana made during a pelagic expedition in May 2017 off Gau Island, Fiji. This is the first confirmed record of this recently rediscovered species away from New Zealand, and provides evidence of long-distance dispersal by failed or non-breeders to tropical waters. It expands the known range by c.2,000 km north. Identification necessitated a thorough review of the ‘streaked storm petrels’ of the Pacific Ocean and this is summarised.

Gene flow and differentiation in a native calcareous sponge (Porifera) with unknown dispersal phase

Clathrina aurea is a calcareous sponge with a wide distribution along the Eastern South American coast. Despite this wide distribution, larvae have never been observed in this species. In the present work, we investigated the population differentiation and dispersal capacity of this native species along the Southwestern Atlantic (South-Southeastern Brazil) using genetic data (microsatellites) and morphological comparison. Clathrina aurea presented high genetic diversity with a high number of alleles and high heterozygosity compared to other sponge species. On the other hand, our results showed inbreeding and significant population structure, although with some evidence of long-distance dispersal. The structuring pattern observed could be a result of the influence of the local marine landscape/environment and ocean currents in a stepping-stone model. The external morphology was conservative; however, spicule measurements were significantly different within and among localities, evidencing its high variability in the class Calcarea. This is the first population genetics study of a native calcareous sponge using microsatellites.

Molecular Ecology of New World Quails: Messages for Managers

Recent genetic studies of New World quails (Odontophoridae) have yielded important, and sometimes, counter-intuitive insights regarding their evolutionary relationships, genetic diversity, population structure, and biogeographic history. Many of these new insights have important implications for managers. New World quails are a distinct family within galliforms, most closely related to guineafowl (Numididae) and pheasants (Phasianidae) rather than guans and chachalacas (Cracidae). The African stone partridges (Ptilopachus spp.) are the closest living relatives of the New World quails. The combination of phylogeographic studies with ecological niche modeling has revealed the biogeographic history of several species of New World quails, including Pleistocene refugia and post-Pleistocene range expansions, contractions, or stasis. Divergence times within and among genera often date to climactic or geologic events 1–5 million years ago. The many subspecies of quail described over the past 100 years were based on minor differences in plumage and probably represent artificial sectioning of latitudinal clines rather than historically isolated and evolutionary distinct units. Subspecies are often used as proxies for management units, but conservation efforts directed at the northern bobwhite (Colinus virginianus) and scaled (Callipepla squamata), California (C. californica), and Gambel’s (C. gambelii) quails may not benefit from such an approach. Ecological regions, rather than subspecies, are probably more appropriate as a ‘‘management unit.’’ The overall lack of population structure, evidence of long-distance dispersal and historical gene flow among populations, and the cyclical population dynamics of these species suggest that there is a biological basis for conserving large blocks of interconnected habitat. Focal areas of restoration projects should be spatially extensive and interconnected to facilitate dispersal and recolonization. With a better understanding of how quail populations responded to past climactic conditions, we are better able to predict how quail may respond to future conditions and ensure the conservation of these iconic New World birds.

Genetic diversity and population history of the Killarney fern,Vandenboschia speciosa(Hymenophyllaceae), at its southern distribution limit in continental Europe

The improvement of the conservation and management strategies of endangered species requires an understanding of the history and current state of their populations and thus population genetic studies become essential. This situation is especially critical for the relict populations at the low-latitude limit of the species range, which have persisted at suitable sites across Tertiary and Quaternary climatic changes and are expected to have retained a high proportion of the genetic diversity of the species. Here we investigate the genetic diversity and structure of Vandenboschia speciosa, a vulnerable endemic European-Macaronesian species with a disjunct distribution, at its southernmost distribution limit in continental Europe (S Iberian Peninsula: Andalusia, Spain). We analysed six sporophyte populations from the eight known populations using ten microsatellite loci. The results indicated moderate genetic diversity at the regional scale but low diversity at the population level and a significant genetic differentiation between populations. Coalescent analyses revealed a population history in Andalusia characterized by a migration-drift equilibrium with historical dispersals as the main factors influencing population structure, but now predominately influenced by genetic drift, according to the genetic differentiation detected. Spatial autocorrelation and genetic-structure analyses (multivariate and STRUCTURE analyses) suggest that historic gene flow was mainly over short distances, since significant genetic relationships were detected between pairs of nearby populations (< 7 km). Only one population, the most diverse, shows evidence of long-distance dispersal. This study provides a baseline for designing appropriate conservation strategies for V. speciosa in Andalusia, where the regional government has recently approved a recovery and conservation plan.

Species discovery and diversity in Lobocriconema (Criconematidae: Nematoda) and related plant-parasitic nematodes from North American ecoregions

There are many nematode species that, following formal description, are seldom mentioned again in the scientific literature. Lobocriconema thornei and L. incrassatum are two such species, described from North American forests, respectively 37 and 49 years ago. In the course of a 3-year nematode biodiversity survey of North American ecoregions, specimens resembling Lobocriconema species appeared in soil samples from both grassland and forested sites. Using a combination of molecular and morphological analyses, together with a set of species delimitation approaches, we have expanded the known range of these species, added to the species descriptions, and discovered a related group of species that form a monophyletic group with the two described species. In this study, 148 specimens potentially belonging to the genus Lobocriconema were isolated from soil, individually measured, digitally imaged, and DNA barcoded using a 721 bp region of cytochrome oxidase subunit 1 (COI). One-third of the specimens were also analyzed using amplified DNA from the 3' region of the small subunit ribosomal RNA gene (18SrDNA) and the adjacent first internal transcribed spacer (ITS1). Eighteen mitochondrial haplotype groups, falling into four major clades, were identified by well-supported nodes in Bayesian and maximum likelihood trees and recognized as distinct lineages by species delimitation metrics. Discriminant function analysis of a set of morphological characters indicated that the major clades in the dataset possessed a strong morphological signal that decreased in comparisons of haplotype groups within clades. Evidence of biogeographic and phylogeographic patterns was apparent in the dataset. COI haplotype diversity was high in the southern Appalachian Mountains and Gulf Coast states and lessened in northern temperate forests. Lobocriconema distribution suggests the existence of phylogeographic patterns associated with recolonization of formerly glaciated regions by eastern deciduous forest, but definitive glacial refugia for this group of plant parasitic nematodes have yet to be identified. Unlike agricultural pest species of plant-parasitic nematodes, there is little evidence of long-distance dispersal in Lobocriconema as revealed by haplotype distribution. Most haplotype groups were characterized by low levels of intragroup genetic variation and large genetic distances between haplotype groups. The localization of nematode haplotypes together with their characteristic plant communities could provide insight into the historical formation of these belowground biotic communities.

Phylogeography of the Rock Shell Thais clavigera (Mollusca): Evidence for Long-Distance Dispersal in the Northwestern Pacific.

The present-day genetic structure of a species reflects both historical demography and patterns of contemporary gene flow among populations. To precisely understand how these factors shape current population structure of the northwestern (NW) Pacific marine gastropod, Thais clavigera, we determined the partial nucleotide sequences of the mitochondrial COI gene for 602 individuals sampled from 29 localities spanning almost the whole distribution of T. clavigera in the NW Pacific Ocean (~3,700 km). Results from population genetic and demographic analyses (AMOVA, ΦST-statistics, haplotype networks, Tajima’s D, Fu’s FS, mismatch distribution, and Bayesian skyline plots) revealed a lack of genealogical branches or geographical clusters, and a high level of genetic (haplotype) diversity within each of studied population. Nevertheless, low but significant genetic structuring was detected among some geographical populations separated by the Changjiang River, suggesting the presence of geographical barriers to larval dispersal around this region. Several lines of evidence including significant negative Tajima’s D and Fu’s FS statistics values, the unimodally shaped mismatch distribution, and Bayesian skyline plots suggest a population expansion at marine isotope stage 11 (MIS 11; 400 ka), the longest and warmest interglacial interval during the Pleistocene epoch. The lack of genetic structure among the great majority of the NW Pacific T. clavigera populations may be attributable to high gene flow by current-driven long-distance dispersal of prolonged planktonic larval phase of this species.

Lack of genetic structure and evidence for long-distance dispersal in ash (Fraxinus excelsior) populations under threat from an emergent fungal pathogen: implications for restorative planting

Genetic analysis on populations of European ash (Fraxinus excelsior) throughout Ireland was carried out to determine the levels and patterns of genetic diversity in naturally seeded trees in ash woodlands and hedgerows, with the aim of informing conservation and replanting strategies in the face of potential loss of trees as a result of ash dieback. Samples from 33 sites across Northern Ireland and three sites in the Republic of Ireland were genotyped for eight nuclear and ten chloroplast microsatellites. Levels of diversity were high (mean A R = 10.53; mean H O = 0.709; mean H E = 0.765) and were similar to those in Great Britain and continental Europe, whilst levels of population genetic differentiation based on nuclear microsatellites were extremely low (Φ ST = 0.0131). Levels of inbreeding (mean F IS = 0.067) were significantly lower than those reported for populations from Great Britain. Fine-scale analysis of seed dispersal indicated potential for dispersal over hundreds of metres. Our results suggest that ash woodlands across Ireland could be treated as a single management unit, and thus native material from anywhere in Ireland could be used as a source for replanting. In addition, high potential for dispersal has implications for recolonization processes post-ash dieback (Chalara fraxinea) infection, and could aid in our assessment of the capacity of ash to shift its range in response to global climate change.

Management of Chrysanthemoides monilifera subsp. rotundata in Western Australia

AbstractOne of Australia's most serious weeds, Chrysanthemoides monilifera subsp. rotundata (bitou bush) was recently found for the first time in Western Australia as a well established population in Kwinana, a major port and industrial area south of Perth, the State's capital. This population is remote from other bitou bush infestations in Australia and had escaped detection despite extensive surveys in the same State for the other subspecies that is present in Australia, Chrysanthemoides monilifera subsp. monilifera (boneseed). The main reasons it went undetected are thought to be the tightly controlled access to this area because of mineral processing and port activities, the unusual invasion route via a heavy industrial area and the morphological similarity to a native species when it is not flowering. Two surveys defined the core population of 1038 plants that are spread along the coast over a 25-ha semi-circle with about a 500-m (1640 ft) diameter. Subsequent surveys of first a 500 m buffer zone and later a 1-km (0.621 mi) buffer found four additional plants, indicating that there is considerable potential for dispersal. We concluded that the survey has not delimited the distribution because of the potential and evidence for long distance dispersal. Cooperation by the various land managers has led to all plants being killed, as an initial step to management of this species. Other steps to be undertaken include an awareness campaign in the area that would need to be surveyed for delimitation of the spatial distribution and seed bank assessment to measure potential dispersal both in space and through time. It remains to be determined what is the best strategic response: eradication or containment.

Phylogenetic Evidence of Long Distance Dispersal and Transmission of Piscine Reovirus (PRV) between Farmed and Wild Atlantic Salmon

The extent and effect of disease interaction and pathogen exchange between wild and farmed fish populations is an ongoing debate and an area of research that is difficult to explore. The objective of this study was to investigate pathogen transmission between farmed and wild Atlantic salmon (Salmo salar L.) populations in Norway by means of molecular epidemiology. Piscine reovirus (PRV) was selected as the model organism as it is widely distributed in both farmed and wild Atlantic salmon in Norway, and because infection not necessarily will lead to mortality through development of disease. A matrix comprised of PRV protein coding sequences S1, S2 and S4 from wild, hatchery-reared and farmed Atlantic salmon in addition to one sea-trout (Salmo trutta L.) was examined. Phylogenetic analyses based on maximum likelihood and Bayesian inference indicate long distance transport of PRV and exchange of virus between populations. The results are discussed in the context of Atlantic salmon ecology and the structure of the Norwegian salmon industry. We conclude that the lack of a geographical pattern in the phylogenetic trees is caused by extensive exchange of PRV. In addition, the detailed topography of the trees indicates long distance transportation of PRV. Through its size, structure and infection status, the Atlantic salmon farming industry has the capacity to play a central role in both long distance transportation and transmission of pathogens. Despite extensive migration, wild salmon probably play a minor role as they are fewer in numbers, appear at lower densities and are less likely to be infected. An open question is the relationship between the PRV sequences found in marine fish and those originating from salmon.

Phylogeography of Aedes aegypti (Yellow Fever Mosquito) in South Florida: mtDNA Evidence for Human-Aided Dispersal

The invasive dengue vector Aedes aegypti has persisted for > 200 years in South Florida in the United States. We tested the hypotheses that Florida's landscape creates dispersal barriers and corridors and that long-distance human-aided dispersal structures populations of Ae. aegypti. We evaluated the phylogeography of 362 individuals from Florida's East and West Coasts with a 760-bp (418- and 342-bp fragments of ND5 and ND4, respectively) mitochondrial sequence. Populations from these two coasts were not significantly differentiated, suggesting that limited urbanization in central Florida is not a strong barrier to gene flow. Evidence for long-distance dispersal between Ft. Lauderdale and the West and Ft. Myers and the East indicates the importance of human-aided dispersal. West Coast populations showed no genetic differentiation, indicating that West Coast rivers and bays did not significantly impede gene flow. Phylogeographic analysis of haplotypes showed two distinct matrilines with no geographic patterns, suggesting multiple introductions or balancing selection.

Evidence for Long-distance Dispersal and Successful Interpopulation Breeding of the Endangered Piping Plover

There are two recognized subspecies of the Piping Plover (Charadrius melodus): the Atlantic coast United States and Canada (‘Atlantic’) subspecies and the Great Lakes and Northern Great Plains (‘Interior’) subspecies. More than 7,000 Piping Plovers have been banded and monitored since 1982, yet no individual marked as a hatchling or breeding adult in the range of one subspecies has been reported breeding in the range of the other. Recent molecular genetic analyses further support subspecific taxonomic classification of Atlantic and Interior breeding populations. On 22 May 2011, a banded Piping Plover and unbanded mate were observed nesting on North Core Banks, Cape Lookout National Seashore, North Carolina, USA. The uniquely-banded adult was a female captured as a chick at Wasaga Beach, Georgian Bay, Ontario, Canada; the female nested unsuccessfully in its first breeding year at Tawas Point State Park, Michigan, USA and then successfully fledged two chicks in its second breeding year at North Core Banks, North Carolina, USA. The observation is the first confirmed record of a Piping Plover dispersing from its subspecies' range and successfully breeding in the range of the other subspecies.

Evidence for long-distance dispersal of Sophora microphylla to sub-Antarctic Macquarie Island

A seed probably of kowhai (Sophora microphylla), was found on a lake shore at Macquarie Island. The species does not occur on the island, and the seed may have been carried there by a bird that found it at sea. It shows how two consecutively acting long-distance dispersal agents may have facilitated colonization of oceanic islands by the Edwardsia group of Sophora species.

Fungal microbiota from rain water and pathogenicity of Fusarium species isolated from atmospheric dust and rainfall dust

In order to determine the presence of Fusarium spp. in atmospheric dust and rainfall dust, samples were collected during September 2007, and July, August, and October 2008. The results reveal the prevalence of airborne Fusarium species coming from the atmosphere of the South East coast of Spain. Five different Fusarium species were isolated from the settling dust: Fusarium oxysporum, F. solani, F. equiseti, F. dimerum, and F. proliferatum. Moreover, rainwater samples were obtained during significant rainfall events in January and February 2009. Using the dilution-plate method, 12 fungal genera were identified from these rainwater samples. Specific analyses of the rainwater revealed the presence of three species of Fusarium: F. oxysporum, F. proliferatum and F. equiseti. A total of 57 isolates of Fusarium spp. obtained from both rainwater and atmospheric rainfall dust sampling were inoculated onto melon (Cucumis melo L.) cv. Piñonet and tomato (Lycopersicon esculentum Mill.) cv. San Pedro. These species were chosen because they are the main herbaceous crops in Almeria province. The results presented in this work indicate strongly that spores or propagules of Fusarium are able to cross the continental barrier carried by winds from the Sahara (Africa) to crop or coastal lands in Europe. Results show differences in the pathogenicity of the isolates tested. Both hosts showed root rot when inoculated with different species of Fusarium, although fresh weight measurements did not bring any information about the pathogenicity. The findings presented above are strong indications that long-distance transmission of Fusarium propagules may occur. Diseases caused by species of Fusarium are common in these areas. They were in the past, and are still today, a problem for greenhouses crops in Almería, and many species have been listed as pathogens on agricultural crops in this region. Saharan air masses dominate the Mediterranean regions. The evidence of long distance dispersal of Fusarium spp. by atmospheric dust and rainwater together with their proved pathogenicity must be taken into account in epidemiological studies.

Population structure and historical demography of the thorny skate (Amblyraja radiata, Rajidae) in the North Atlantic

Population genetic structure of the thorny skate (Amblyraja radiata) was surveyed in >300 individuals sampled from Newfoundland, Iceland, Norway, the Kattegat and the central North Sea. A 290-bp fragment of the mt cytochrome-b gene was first screened by SSCP. Sequences of SSCP haplotypes revealed 34 haplotypes, 14 of which were unique to Iceland, 3 to Newfoundland, 1 to Norway and 3 to the Kattegat. The global FST was weak but significant. Removal of the two Kattegat locations, which were the most differentiated, resulted in no significant genetic differentiation. Haplotype diversity was high and evenly distributed across the entire Atlantic (h = 0.8) with the exception of the North Sea (h = 0.48). Statistical parsimony revealed a star-like genealogy with a central widespread haplotype. A subsequent nested clade analysis led to the inference of contiguous expansion with evidence for long distance dispersal between Newfoundland and Iceland. Historical demographic analysis showed that thorny skates have undergone exponential population expansion that started between 1.1 million and 690,000 years ago; and that the Last Glacial Maximum apparently had little effect. These results strongly differ from those of a parallel study of the thornback ray (Raja clavata) in which clear structure and former refugial areas could be identified. Although both species have similar life history traits and overlapping ranges, the continental shelf edge apparently does not present a barrier to migration in A. radiata, as it does for R. clavata.

Phylogeography of the endangered Cathaya argyrophylla (Pinaceae) inferred from sequence variation of mitochondrial and nuclear DNA

Cathaya argyrophylla is an endangered conifer restricted to subtropical mountains of China. To study phylogeographical pattern and demographic history of C. argyrophylla, species-wide genetic variation was investigated using sequences of maternally inherited mtDNA and biparentally inherited nuclear DNA. Of 15 populations sampled from all four distinct regions, only three mitotypes were detected at two loci, without single region having a mixed composition (G(ST) = 1). Average nucleotide diversity (theta(ws) = 0.0024; pi(s) = 0.0029) across eight nuclear loci is significantly lower than those found for other conifers (theta(ws) = 0.003 approximately 0.015; pi(s) = 0.002 approximately 0.012) based on estimates of multiple loci. Because of its highest diversity among the eight nuclear loci and evolving neutrally, one locus (2009) was further used for phylogeographical studies and eight haplotypes resulting from 12 polymorphic sites were obtained from 98 individuals. All the four distinct regions had at least four haplotypes, with the Dalou region (DL) having the highest diversity and the Bamian region (BM) the lowest, paralleling the result of the eight nuclear loci. An AMOVA revealed significant proportion of diversity attributable to differences among regions (13.4%) and among populations within regions (8.9%). F(ST) analysis also indicated significantly high differentiation among populations (F(ST) = 0.22) and between regions (F(ST) = 0.12-0.38). Non-overlapping distribution of mitotypes and high genetic differentiation among the distinct geographical groups suggest the existence of at least four separate glacial refugia. Based on network and mismatch distribution analyses, we do not find evidence of long distance dispersal and population expansion in C. argyrophylla. Ex situ conservation and artificial crossing are recommended for the management of this endangered species.

Phylogeographical disjunction in abundant high‐dispersal littoral gastropods

Abstract Phylogeographical disjunctions in high-dispersal marine taxa are variously ascribed to palaeogeographical conditions or contemporary ecological factors. Associated biogeographical studies, however, seldom incorporate the sampling design required to confidently discriminate among such competing hypotheses. In the current study, over 7800 gastropod specimens were examined for operculum colour, and 129 specimens genetically, to test ecological and historical biogeographical hypotheses relating to biogeographical disjunction in the Southern Hemisphere, and to southern Australia in particular. Mitochondrial DNA sequence analysis of the high-dispersal intertidal gastropod Nerita atramentosa in southern Australia (88 specimens; 18 localities) revealed an east-west phylogeographical split involving two highly divergent clades (26.0 +/- 1.9%) exhibiting minimal geographical overlap in the southeast. The eastern clade of Nerita atramentosa is also widespread in northern New Zealand (43 specimens, 10 localities), but no significant genetic differentiation is explained by the Tasman Sea, a 2000-km-wide oceanic barrier. Spatial genetic structure was not detected within either clade, consistent with the species' dispersive planktotrophic phase lasting for 5-6 months. Digital analysis of operculum colouration revealed substantial differences between eastern (tan) and western (black) specimens. Genetic analysis and visual inspection of 88 Australian specimens revealed a completely nonrandom association between mtDNA data and operculum colouration. Independent examination of a further 7822 specimens from 14 sites in southern Australia revealed both colour morphs at all localities, but reinforced the phylogeographical data by indicating a marked turnover in colour morph abundance associated with a palaeogeographical barrier: Wilsons Promontory. This sharp biogeographical disjunction is in marked contrast to the species' high dispersal abilities. The genetic similarity of Nerita morio (Easter Island) and the eastern Australian + New Zealand lineage (1.1 +/- 0.3%) provides further evidence of long-distance dispersal in southern Nerita. Phylogenetic relationships of nine species (four genera) of Neritidae, an almost exclusively tropical gastropod family, are consistent with the hypothesis that southern temperate black nerites comprise a monophyletic radiation.