Electrostatic Interaction Sites Research Articles

Effect of stacking pattern of multilayered polyetheretherketone/boron nitride composites on the mechanical and thermal properties: Experiments and molecular dynamics simulations

The effect of stacking patterns in multilayered polyetheretherketone (PEEK)/boron nitride (BN) composites was investigated to improve the thermal conductivity and mechanical properties. The thick PEEK and BN layers in the multilayered composite were the best multilayer structure, resulting in high mechanical properties and in-plane thermal conductivity due to the many strong electrostatic interaction sites between boron nitride nanosheets (BNNSs). Molecular dynamics simulations were used to clarify the enhanced mechanism of multilayered structure on thermal conductivity. The multilayered structure with combinations of PEEKs and thick BN layers composed of large BNNSs led to the optimization of heat transfer due to the effective phonon transfer path. The best multilayered composite had the highest in-plane thermal conductivity, which was 471% higher than that of a PEEK. This study provides information about the filler size and stacking patterns for more effective multilayer structures with polymer and filler layers to achieve high performance on mechanical and thermal properties.

How Fe-La-CS microspheres have selective adsorption capacity for As(V) over a wide pH range: Coupling molecular scale interpretation with experiments

In this study, an Fe-La-CS adsorbent with a reticulated structure was prepared by an in situ method, which was able to adsorb arsenate efficiently over a wide pH range of 3–11. The incorporation of iron and lanthanum ions broadened the tolerant pH range of the adsorbent compared with chitosan beads (CS). Arsenic was mainly present in the pH range of 3–9 as two forms, H2AsO4− and HAsO42−. Calculations using the density-functional theory (DFT) showed that in the Ligand interactions and electrostatic interactions dominate in the pH range, with surface precipitation, and hydrogen bonding interactions playing a facilitating role. The background ions mainly compete with arsenic adsorption for electrostatic interaction sites. However, due to the different valence states of the background ions, the competition intensity is different. Such as low valence state representative ions Na+, K+ competitiveness is weak, and arsenic competition adsorption first occupy different adsorption sites, therefore, from the quantum chemistry and molecular dynamics point of view of Na+, K+ on arsenic adsorption almost no effect. Cl−, SO42− will have some influence on arsenic adsorption because of the same charge with arsenic, but the charged amount is smaller than arsenic and the molecular structure is different from that of arsenic, so the influence is not very big. In summary, the material design of Fe-La-CS adsorbent has great potential and theoretical significance for selective purification of heavy metal wastewater at wide pH.

Molecular mechanism of efficient separation of isopropyl alcohol and isooctane by extractive distillation

In this paper, a method of extracting isopropyl alcohol and isooctane system from industrial wastewater of fuel oil by extractive distillation is proposed to realize resource utilization of waste and reduce environmental pollution. Isooctane and isopropyl alcohol are both products obtained from petroleum refining, which are widely used in many fields. In this study, the quantum chemical was used to determine that glycerol (Gl) and N, N-dimethylacetamide (DMAC) were the best extractants to separate Isopropanol and isopropyl alcohol. The intermolecular electrostatic interaction and reaction site between the extractant and the system were determined by electrostatic potential (ESP) analysis. Inter-complex compounds and weak interactions were analyzed by interaction region indicator (IRI). The independent gradient model based on Hirschfeld partition (IGMH) was used to visualize the electron density of the molecule. Meanwhile, the simulation process of azeotropic mixture separation of IPA and ISO by extractive distillation was established, and the process was optimized by a sequential iterative method. The economic and environmental were used to evaluate and analyze the process, and the azeotropic mixture separation was realized. Compared with Gl, the extractive distillation separation of isopropyl alcohol and isooctane by DMAC reduces the total annual cost by 5 %, energy consumption, and reduces the greenhouse gas emissions by 1 %, and has greater environmental protection and economic benefits. This work is guided by quantum chemical calculation and reveals the interaction mechanism of solvent separation azeotropic mixture from the microscopic level, which provides an important reference value for realizing high efficiency, energy saving, and green separation of azeotropic mixture in industry.

Multifunctional Eu3+-MOF for simultaneous quantification of malachite green and leuco-malachite green and efficient adsorption of malachite green

Multi-target detection combined with in-situ removal of contaminants is a challenging issue difficult to overcome. Herein, a dual-emissive Eu3+-metal organic framework (Eu3+-MOF) was constructed by pre-functionalization with a blue-emissive ligand and post-functionalization with red-emissive Eu3+ ions using a UiO-66 precursor. The fluorescence of the synthesized Eu3+-MOF is highly selective and sensitive toward malachite green (MG) and its metabolite leuco-malachite green (LMG), which are environmentally persistent and highly toxic to humans. The limit of detection of MG and LMG are 34.20 and 1.98 nM, respectively. Interestingly, the fluorescence of this Eu3+-MOF showed ratiometric but different responsive modes toward MG and LMG, which enabled the simultaneous quantification of MG and LMG. Furthermore, a paper-based sensor combined with the smartphone was fabricated, which facilitated not only the dual-channel detection of MG, but also its portable, visual, rapid, and intelligent determination. Furthermore, the high surface area of MOFs, together with the coordinate bonding interaction, π–π stacking, and electrostatic interaction sites, endows Eu3+-MOF with the efficient ability toward MG removal. This multifunctional Eu3+-MOF can be successfully used for trace detection, simultaneous determination of MG and LMG, as well as efficient removal of MG. Thus, it exhibits bright prospects for widespread applications in the field of food and environmental analysis.

A Monte Carlo simulation study of hydrogen adsorption in slit-shaped pores

Abstract Physisorption of hydrogen inside slit-shaped pores is a simple but promising technique to store hydrogen. Molecular simulations have played an important role in understanding and obtaining hydrogen adsorption isotherms. Here from GCMC simulations, we obtain adsorption isotherms and density profiles of hydrogen inside slit-shaped pores of width 0.7, 1.0 and 1.5 nm at 80 and 298 K. Hydrogen-hydrogen interactions are modeled using classical Silvera-Goldman potential. This potential has electrostatic interaction sites along with Lennard-Jones sites. Wall-fluid interactions are modeled using both Steele potential and an all atom Lennard-Jones potential mimicking Graphene. Adsorption isotherms are similar for both the models and in all pore-widths. At 298 K and 80 K maximum adsorption of hydrogen was obtained at 200 bar and 50 bar respectively. Although our results show that at room temperature and in 1.5 nm pores classically modeled hydrogen adsorption results are somewhat higher than results obtained from quantum corrected potentials but the overall adsorption trends are very well reproduced. At 80 K and 50 bar, gravimetric weight in the 1.5 nm pore was maximum and close to 9 wt%.

Modeling of the adsorption of a protein-fragment on kaolinite with potential antiviral activity

This work aimed at studying the potentiality of interactions between kaolinite surfaces and a protein-fragment (350–370 amino acid units) extracted from the glycoprotein E1 in the transmembrane domain (TMD) of hepatitis C virus capsid. A computational work was performed for locating the potential electrostatic interaction sites between kaolinite aluminol and siloxane surfaces and the residues of this protein-fragment ligand, monitoring the possible conformational changes. This hydrated neutralized kaolinite/protein-fragment system was simulated by means of molecular modeling based on atomistic force fields based on empirical interatomic potentials and molecular dynamic (MD) simulations. The MD calculations indicated that the studied protein-fragment interacted with the kaolinite surfaces with an exothermic process and structural distortions were observed, particularly with the hydrophilic aluminol surface by favorable adsorption energy. The viral units isolation or trapping by the adsorption on the kaolinite nanoparticles producing structural distortion of the peptide ligands could lead to the blockage of the entry on the receptor and hence a lack of viral activity would be produced. Therefore, these findings with the proposed insights could be an useful information for the next experimental and development studies in the area of discovering inhibitors of the global challenged hepatitis and other pathogenic viruses based on the phyllosilicate surface activity. These MD studies can be extended to other viruses like the COVID-19 interacting with silicate minerals surfaces.

Facile synthesis of dual-functionalized microporous organic network for efficient removal of cationic dyes from water

Abstract A facile one-step anhydride hydrolysis strategy was rationally designed to synthesize a novel dual-functionalized microporous organic network (MON-4COOH) with enriched naphthalene and carboxyl groups for efficient removal of cationic dyes. The pre-designed electrostatic, hydrogen bonding, π-π and hydrophobic interaction sites on MON-4COOH led to the complete removal of three typical cationic dyes methylene blue, malachite green and crystal violet (25 mg L−1 for each) within 20 s and gave their maximum adsorption capacities of 2564, 3126 and 1114 mg g−1, respectively. The adsorption of these cationic dyes fitted well with pseudo-second-order kinetic and Langmuir adsorption models. The adsorption kinetics and capacities of these cationic dyes on MON-4COOH were much faster and higher than many other reported adsorbents. The negatively charged MON-4COOH also gave much faster adsorption kinetic and larger adsorption capacity for cationic (methylene blue, malachite green and crystal violet) dyes than anionic dye. The excellent flow-through water treatment ability and reusability also made MON-4COOH highly potential for the remediation of cationic dyes polluted water. This work provided a feasible way to design and synthesize dual-functionalized MONs for efficient adsorption and elimination of environmental pollutants from water.

Multimolecular Complexes of CL-20 with Nitropyrazole Derivatives: Geometric, Electronic Structure, and Stability.

The multimolecular complexes formed between 2,4,6,8,10,12-hexanitro-2,4,6,6,8,10,12-hexaazaisowurtzitane (CL-20) and nitropyrazole compounds were investigated using B3LYP-D3/6-311G(d,p) and B97-3c methods. CL-20 in these complexes was surrounded by methyl, nitro, and amino derivatives of 4-nitropyrazole. The influence of substituents on the molecular electrostatic potential distribution of nitropyrazoles was investigated to figure out the potential electrostatic interaction sites. For the complex, the O···H hydrogen bond was popular in the intermolecular interactions, and dispersion interaction played an essential role, especially in Cx/CL-20 multimolecular complexes. Trigger bond analysis showed that their strength increased upon the formation of intermolecular weak interactions. Nitro group charge calculations stated that the negative charge on almost all nitro groups showed a significant increase. Therefore, the sensitivity of CL-20 seemed to be lower than the original. In addition, the transfer of electron density between CL-20 and nitropyrzoles in complexes was investigated, revealing the influence of weak interactions on the electron density of CL-20.

Modification of chitosan macromolecule and its mechanism for the removal of Pb(II) ions from aqueous environment

It is well-known that heavy metals are non-biodegradable and have been showing remarkable impacts on the environment, public health and economics. Because of high toxic tendency, lead (Pb), is one of the foremost considerable hazardous metal with high environmental impacts. Chitosan is a polysaccharide, and can be utilized in wastewater treatment because of its good sorption ability. Amino and hydroxyl groups (C-3 position) on chitosan can serve as electrostatic interaction and complexation sites for metal cations. Chemical crosslinking can effectively enhance the stability of chitosan in acidic media. Hence a novel, cost-effective and eco-friendly ZnO incorporated into aminated chitosan Schiff's base (ACSSB@ZnO) has been synthesized, characterized (BET, XRD, FTIR, SEM, TEM and 1H NMR), and utilized as an adsorbent for the removal of Pb(II) ions from the aqueous environment. The various operating parameters, such as pH (2–8), agitation speed (30–180), adsorbent dose (0.1–0.8 g), contact time (0–140 min), metal ion concentration and temperature (303−323 K) were investigated. The maximum sorption capacity of Pb(II) onto ACSSB@ZnO was found to be 55.55 mg/g. The equilibrium, and kinetic studies suggested that the adsorption process followed the Langmuir isotherm and Pseudo-Second-Order model. Thermodynamic data showed that the sorption process was feasible, spontaneous, and endothermic.

Particle Diffusion in Polymeric Hydrogels with Mixed Attractive and Repulsive Interactions.

All biogels are heterogeneous, consisting of functional groups with different biophysical properties arrayed on spatially disordered polymer networks. Nanoparticles diffusing in such biogels experience a mixture of attractive and repulsive interactions. Here, we present experimental and theoretical studies of charged particle diffusion in gels with a random distribution of attractive and repulsive electrostatic interaction sites inside the gel. In addition to interaction disorder, we theoretically investigate the effect of spatial disorder of the polymer network. Our coarse-grained simulations reveal that attractive interactions primarily determine the diffusive behavior of the particles in systems with mixed attractive and repulsive interactions. As a consequence, charged particles of either sign are immobilized in mixed cationic/anionic gels because they are trapped near oppositely charged interaction sites, whereas neutral particles diffuse rapidly. Even small fractions of oppositely charged interaction sites lead to strong trapping of a charged particle. Translational diffusion coefficients of charged probe molecules in gels consisting of mixed cationic and anionic dextran polymers are determined by fluorescence correlation spectroscopy and quantitatively confirm our theoretical predictions.

Incorporating Zwitterionic Graphene Oxides into Sodium Alginate Membrane for Efficient Water/Alcohol Separation.

For the selective water-permeation across dense membrane, constructing continuous pathways with high-density ionic groups are of critical significance for the preferential sorption and diffusion of water molecules. In this study, zwitterionic graphene oxides (PSBMA@GO) nanosheets were prepared and incorporated into sodium alginate (SA) membrane for efficient water permeation and water/alcohol separation. The two-dimensional GO provides continuous pathway, while the high-density zwitterionic groups on GO confer electrostatic interaction sites with water molecules, leading to high water affinity and ethanol repellency. The simultaneous optimization of the physical and chemical structures of water transport pathway on zwitterionic GO surface endows the membrane with high-efficiency water permeation. Using dehydration of water/alcohol mixture as the model system, the nanohybrid membranes incorporating PSBMA@GO exhibit much higher separation performance than the SA membrane and the nanohybrid membrane utilizing unmodified GO as filler (with the optimal permeation flux of 2140 g m(-2) h(-1), and separation factor of 1370). The study indicates the great application potential of zwitterionic graphene materials in dense water-permeation membranes and provides a facile approach to constructing efficient water transport pathway in membrane.

Investigation of protein selectivity in multimodal chromatography using in silico designed Fab fragment variants.

In this study, a unique set of antibody Fab fragments was designed in silico and produced to examine the relationship between protein surface properties and selectivity in multimodal chromatographic systems. We hypothesized that multimodal ligands containing both hydrophobic and charged moieties would interact strongly with protein surface regions where charged groups and hydrophobic patches were in close spatial proximity. Protein surface property characterization tools were employed to identify the potential multimodal ligand binding regions on the Fab fragment of a humanized antibody and to evaluate the impact of mutations on surface charge and hydrophobicity. Twenty Fab variants were generated by site-directed mutagenesis, recombinant expression, and affinity purification. Column gradient experiments were carried out with the Fab variants in multimodal, cation-exchange, and hydrophobic interaction chromatographic systems. The results clearly indicated that selectivity in the multimodal system was different from the other chromatographic modes examined. Column retention data for the reduced charge Fab variants identified a binding site comprising light chain CDR1 as the main electrostatic interaction site for the multimodal and cation-exchange ligands. Furthermore, the multimodal ligand binding was enhanced by additional hydrophobic contributions as evident from the results obtained with hydrophobic Fab variants. The use of in silico protein surface property analyses combined with molecular biology techniques, protein expression, and chromatographic evaluations represents a previously undescribed and powerful approach for investigating multimodal selectivity with complex biomolecules.

Histidine-modified organic-silica hybrid monolithic column for mixed-mode per aqueous and ion-exchange capillary electrochromatography.

A novel organic-silica hybrid monolith was prepared through the binding of histidine onto the surface of monolithic matrix for mixed-mode per aqueous and ion-exchange capillary electrochromatography. The imidazolium and amino groups on the surface of the monolithic stationary phase were used to generate an anodic electro-osmotic flow as well as to provide electrostatic interaction sites for the charged compounds at low pH. Typical per aqueous chromatographic behavior was observed in water-rich mobile phases. Various polar and hydrophilic analytes were selected to evaluate the characteristics and chromatographic performance of the obtained monolith. Under per aqueous conditions, the mixed-mode mechanism of hydrophobic and ion-exchange interactions was observed and the resultant monolithic column proved to be very versatile for the efficient separations of these polar and hydrophilic compounds (including amides, nucleosides and nucleotide bases, benzoic acid derivatives, and amino acids) in highly aqueous mobile phases. The successful applications suggested that the histidine-modified organic-silica hybrid monolithic column could offer a wide range of retention behaviors and flexible selectivities toward polar and hydrophilic compounds.

Chirality-assisted ring-like aggregation of aβ(1-40) at liquid-solid interfaces: a stereoselective two-step assembly process.

Molecular chirality is introduced at liquid-solid interfaces. A ring-like aggregation of amyloid Aβ(1-40) on N-isobutyryl-L-cysteine (L-NIBC)-modified gold substrate occurs at low Aβ(1-40) concentration, while D-NIBC modification only results in rod-like aggregation. Utilizing atomic force microscope controlled tip-enhanced Raman scattering, we directly observe the secondary structure information for Aβ(1-40) assembly in situ at the nanoscale. D- or L-NIBC on the surface can guide parallel or nonparallel alignment of β-hairpins through a two-step process based on electrostatic-interaction-enhanced adsorption and subsequent stereoselective recognition. Possible electrostatic interaction sites (R5 and K16) and a chiral recognition site (H14) of Aβ(1-40) are proposed, which may provide insight into the understanding of this effect.

Chirality‐Assisted Ring‐Like Aggregation of Aβ(1–40) at Liquid–Solid Interfaces: A Stereoselective Two‐Step Assembly Process

AbstractMolecular chirality is introduced at liquid–solid interfaces. A ring‐like aggregation of amyloid Aβ(1–40) on N‐isobutyryl‐L‐cysteine (L‐NIBC)‐modified gold substrate occurs at low Aβ(1–40) concentration, while D‐NIBC modification only results in rod‐like aggregation. Utilizing atomic force microscope controlled tip‐enhanced Raman scattering, we directly observe the secondary structure information for Aβ(1–40) assembly in situ at the nanoscale. D‐ or L‐NIBC on the surface can guide parallel or nonparallel alignment of β‐hairpins through a two‐step process based on electrostatic‐interaction‐enhanced adsorption and subsequent stereoselective recognition. Possible electrostatic interaction sites (R5 and K16) and a chiral recognition site (H14) of Aβ(1–40) are proposed, which may provide insight into the understanding of this effect.

Significant water absorption goes paracellular in kidney proximal tubules

it had been a fundamental dispute for several decades, whether water passes epithelia such as kidney proximal tubule or small intestine along the transcellular, paracellular, or both pathways. By discovery of the transmembranal aquaporin water channels (AQP), the molecular basis of the

Design of a Novel Mesoporous Organosilica Hybrid Microcarrier: a pH Stimuli‐Responsive Dual‐Drug‐Delivery Vehicle for Intracellular Delivery of Anticancer Agents

The integration of unique functionality into mesoporous organosilica hybrid carriers is an important issue in solving the challenges of dual/multi delivery for combined therapy with drugs with a distinct therapeutic effects. Newly designed mesoporous organosilica hybrid microcarriers (HMCs) are synthesized on the basis of the triblock‐copolymer‐templated sol–gel method. The synthesized HMCs, which integrate both heteroaromatic pyridine and diurea functionalities, are combined in a mesoporous organosilica hybrid network to design functional hybrid microcarriers with a range of mechanisms for the pH‐triggered release of two drugs. The drugs include the hydrophilic anticancer therapeutic agent 5‐fluorouracil (5‐FU) and the non‐steroidal hydrophobic anti‐inflammatory drug ibuprofen (IBU). 5‐FU and IBU are encapsulated in the HMCs using multiple hydrogen bonding and electrostatic interaction sites and are delivered under a range of pH conditions. The release of 5‐FU and IBU is tested at pH 5.5 and 7.4. The results show that the release is sensitive to pH. The antitumor activity of the released 5‐FU is evaluated using the MCF‐7 cell line. The released 5‐FU has the capacity to kill cancer cells under acidic pH conditions.

Solid-phase extraction of galloyl- and caffeoylquinic acids from natural sources (Galphimia glauca and Arnicae flos) using pure zirconium silicate and bismuth citrate powders as sorbents inside micro spin columns

Galloyl- and caffeoylquinic acids are among the most important pharmacological active groups of natural compounds. This study describes a pre-step in isolation of some selected representatives of these groups from biological samples. A selective solid-phase extraction (SPE) method for these compounds may help assign classes and isomer designations within complex mixtures. Pure zirconium silicate and bismuth citrate powders (325 mesh) were employed as two new sorbents for optimized SPE of phenolic acids. These sorbents possess electrostatic interaction sites which accounts for additional interactions for carbon acid moieties as compared to hydrophilic and hydrophobic sorbents alone. Based on this principle, a selective SPE method for 1,3,4,5-tetragalloylquinic acid (an anti-HIV and anti-asthamatic agent) as a starting compound was developed and then deployed upon other phenolic acids with success. The recoveries and selectivities of both sorbents were compared to most commonly applied and commercially available sorbents by using high performance liquid chromatography. The nature of interaction between the carrier sorbent and the acidic target molecules was investigated by studying hydrophilic (silica), hydrophobic (C18), mixed-mode (ionic and hydrophobic: Oasis® MAX) and predominantly electrostatic (zirconium silicate) materials. The newly developed zirconium silicate and bismuth citrate stationary phases revealed promising results for the selective extraction of galloyl- and caffeoylquinic acids from natural sources. It was observed that zirconium silicate exhibited maximum recovery and selectivity for tetragalloylquinic acid (84%), chlorogenic acid (82%) and dicaffeoylquinic acid (94%) among all the tested sorbents.

Effects of protein conformational motions in the native form and non-uniform distribution of electrostatic interaction sites on interfacial water

Protein–water interactions and their influence on surrounding water is a long-standing problem. Despite its importance, the origin of differential water behavior at the protein surface is still elusive. We have performed molecular simulations of the protein barstar in aqueous medium. Efforts have been made to explore how the conformational motions of the protein segments in the native form and the heterogeneous electrostatic interactions with the polar and charged groups of the protein affect the interfacial water properties. The calculations reveal that reduced dimension of the hydration layer on freezing the protein’s degrees of freedom does not modify the heterogeneous water distributions around the protein. However, turning off the protein–water electrostatic contribution leads to non-preferential near-uniform water arrangements at the surface. It is further shown that with protein–water electrostatic interactions turned on, the local structuring of water molecules around the segments are correlated with their degree of exposure to the solvent.

The systematic structure–activity relationship to predict how flavones bind to human androgen receptor for their antagonistic activity

Although flavones act as potent androgen receptor (AR) antagonists, it remains unclear how flavones interact with AR. The aim of this in silico study was to investigate the molecular recognition processes of newly synthesized 5,4′-difluoroflavone with the highest activity (IC50 value=0.19μM) in the AR-ligand binding domain (AR-LBD). The results demonstrated that at its 4′-position of 5,4′-difluoroflavone the substituents may face Arg752 and that in AR-LBD, the submolecular bulk of substituents is unfavorable for AR antagonists and the negative electrostatic interaction site prefers the stronger hydrogen bond capability of substituents of AR antagonists. The prediction model is a valuable tool for designing a novel AR antagonist.