Ecological Data Research Articles

Preliminary survey of medicinal plants in Soga-Perdana Forest Eco-Park Johor, Malaysia

Malaysian forests are home to rich biological diversity, many of which have potential medicinal values. However, like in many other ecosystems worldwide, these forests are in the brink of biodiversity loss caused by natural and anthropogenic pressures. This study presents the preliminary survey of medicinal plants in Soga-Perdana Forest Eco-Park Johor, Peninsular Malaysia. A rapid biodiversity assessment (RBA) method along the 2000 m by 20 m transect was used to collect taxonomic and ecological data. From the survey, 55 species of plants with known traditional medicinal uses were recorded, with Coscinium fenestratum categorised by IUCN as a critically endangered species. Aside from species that are traditionally used by indigenous people, some were commercially important species in medicine and timber production, namely Eurycoma longifolia, Dryobalanops aromatica and Shorea leprosula. This study provides evidence that even a small patch of forest surrounded by urbanised area and other land uses contains high diversity of plants with potential medicinal values. This calls for long-term conservation and effective management of this ecosystem, not only for the perpetuity of these species, but also to harness its potential scientific value in the field of pharmaceuticals and other areas related to biological diversity.

Implementing a citizen science bird monitoring project in the Grampians/Gariwerd National Park, Victoria, Australia

ABSTRACT Global bird populations are threatened by ongoing habitat loss and climate change. Inconsistent and short-term funding of faunal surveys in Australia makes population and distribution changes difficult to detect. To meet this challenge, alternative methods of supplementing regular surveys by professional ornithologists have been proffered, including surveys by trained citizen scientists. Here we outline the development, implementation and assessment of the Great Gariwerd Bird Survey (GGBS), a citizen science (CS) monitoring project designed to address long-term management questions in vulnerable Stringybark Heathy Woodland in Grampians/Gariwerd National Park. Forty volunteers that met appropriate criteria were selected and trained in practical 10-week/40-h courses. We assessed data from 288 2-ha/20-min surveys undertaken in autumn and spring 2021 at 36 sites, ran workshops to improve surveyor skills and data quality and assessed trainee experiences and program content through online anonymous surveys. Concurrent professional field ornithologist surveys enabled cross validation of CS surveys. Overlapping species accumulation curves for professional and citizen scientist surveys reflected very high correlations for site species diversity (r = 0.836) and abundances (r = 0.768). In autumn, the professional surveyor recorded significantly more species and birds than CS surveyors. Additional training in the identification of cryptic birds and challenging calls partially addressed the numerical differences in the following spring survey. This project demonstrates the potential for valuable long-term ecological data collection by well-trained citizen scientists with benefits to community environmental knowledge and participation despite some manageable obstacles. Participant surveys showed highly positive program perceptions, reflected by ongoing involvement in the GGBS.

Genomic insights into local adaptation and vulnerability of Quercus longinux to climate change

BackgroundClimate change is expected to alter the factors that drive changes in adaptive variation. This is especially true for species with long life spans and limited dispersal capabilities. Rapid climate changes may disrupt the migration of beneficial genetic variations, making it challenging for them to keep up with changing environments. Understanding adaptive genetic variations in tree species is crucial for conservation and effective forest management. Our study used landscape genomic analyses and phenotypic traits from a thorough sampling across the entire range of Quercus longinux, an oak species native to Taiwan, to investigate the signals of adaptation within this species.ResultsUsing ecological data, phenotypic traits, and 1,933 single-nucleotide polymorphisms (SNPs) from 205 individuals, we classified three genetic groups, which were also phenotypically and ecologically divergent. Thirty-five genes related to drought and freeze resistance displayed signatures of natural selection. The adaptive variation was driven by diverse environmental pressures such as low spring precipitation, low annual temperature, and soil grid sizes. Using linear-regression-based methods, we identified isolation by environment (IBE) as the optimal model for adaptive SNPs. Redundancy analysis (RDA) further revealed a substantial joint influence of demography, geology, and environments, suggesting a covariation between environmental gradients and colonization history. Lastly, we utilized adaptive signals to estimate the genetic offset for each individual under diverse climate change scenarios. The required genetic changes and migration distance are larger in severe climates. Our prediction also reveals potential threats to edge populations in northern and southeastern Taiwan due to escalating temperatures and precipitation reallocation.ConclusionsWe demonstrate the intricate influence of ecological heterogeneity on genetic and phenotypic adaptation of an oak species. The adaptation is also driven by some rarely studied environmental factors, including wind speed and soil features. Furthermore, the genetic offset analysis predicted that the edge populations of Q. longinux in lower elevations might face higher risks of local extinctions under climate change.

Life history of an evolutionary distinct aquatic caecilian amphibian (genus Potomotyphlus) in eastern Amazonia, Brazil

Abstract Basic ecological data for caecilians are relatively lacking. This study presents the first comprehensive ecological investigation of the Amazonian aquatic caecilian Potomotyphlus kaupii, utilizing a large sample size. We collected population data over a 14-month period, and also used data of museum specimens, both from Belém, State of Pará, Brazil. Our analysis focused on sex ratio, sexual size dimorphism (SSD), female fecundity, and ecological observations. No significant differences in adult sex ratio were found. SSD was found in some characters such as circumference at midbody and body mass with females being larger than males, while males had a wider and longer cloacal disc. We provide the first determination of the approximate size at which males diverge from females in the terminal portion of the body, demonstrating an allometric growth pattern of the cloacal region. Female size showed a positive correlation with the number of ovarian eggs, indicating an important reproductive strategy. Furthermore, a novel behaviour in P. kaupii was documented. We expand the understanding of Gymnophiona biology, in particular of a fully aquatic species, and provide support for future ecological and conservation research on caecilians.

A taxonomic revision of the sponge-associated genus Thoracactis Gravier, 1918 (Anthozoa: Zoantharia) based on an integrated approach

Abstract The integrated approach of molecular phylogenetic and morphological analyses has revolutionized the systematics and our understanding of the evolutionary relationships of marine taxa. One such group is the hexacorallian order Zoantharia Rafinesque, 1815. The monotypic genus Thoracactis Gravier, 1918 has been little investigated since its placement within the order Zoantharia more than 100 years ago. Here, we examined museum specimens collected from the Cape Verde Islands (eastern Atlantic) and newly collected specimens from Brazil (southwestern Atlantic), using a combined molecular and morphological approach. Our results conclusively show Thoracactis to be referable to the family Parazoanthidae. Morphological data show that Thoracactis topsenti Gravier, 1918, the type species of this monotypic genus, has a cyclically transitional arrangement of its sphincter muscle, and this arrangement has previously been reported from the Parazoanthidae. Thoracactis can be distinguished from other hexasterophoran glass-sponge-associated genera (Churabana Kise, Montenegro & Reimer, 2022, Parachurabana Kise, 2023, and Vitrumanthus Kise, Montenegro & Reimer, 2022) by a combination of morphological, ecological and molecular phylogenetic data. In addition, molecular phylogenetic analyses clearly indicate that Thoracactis topsenti is placed within Parazoanthidae. These results are yet another demonstration of the utility of comprehensive combined approaches. From now, research attention should focus on the revision of remaining taxonomic questions within the family Epizoanthidae, with the goal of a comprehensively revised suborder Macrocnemina within reach.

Datascape: exploring heterogeneous dataspace

Data science is a powerful field for gaining insights, comparing, and predicting behaviors from datasets. However, the diversity of methods and hypotheses needed to abstract a dataset exhibits a lack of genericity. Moreover, the shape of a dataset, which structures its contained information and uncertainties, is rarely considered. Inspired by state-of-the-art manifold learning and hull estimations algorithms, we propose a novel framework, the datascape, that leverages topology and graph theory to abstract heterogeneous datasets. Built upon the combination of a nearest neighbor graph, a set of convex hulls, and a metric distance that respects the shape of the data, the datascape allows exploration of the dataset’s underlying space. We show that the datascape can uncover underlying functions from simulated datasets, build predictive algorithms with performance close to state-of-the-art algorithms, and reveal insightful geodesic paths between points. It demonstrates versatility through ecological, medical, and simulated data use cases.

Evolutionary trends and analysis of the driving factors of Ulva prolifera green tides: A study based on the random forest algorithm and multisource remote sensing images

Understanding the prolonged spatiotemporal evolution and identifying the underlying causes of Ulva prolifera green tides play pivotal roles in managing such occurrences, restoring water ecology, and fostering sustainable development in marine ecosystems. Satellite remote sensing represents the primary choice for monitoring Ulva prolifera green tides due to its capability for extensive, long-term ocean monitoring. With the use of multisource ecological and environmental big data, such as GOCI Ⅰ/Ⅱ images, meteorological data, runoff data, and data on various water quality parameters (SST, ocean current speed, wind speed, precipitation, DO, PAR, Si, NO3-, PO4-, and N/P), pertaining to the highly impacted South Yellow Sea of China, an innovative remote sensing extraction model was established. This model involved a hybrid approach, merging the robustness of the random forest (RF) model and the optical algae cloud index (ACI) to map Ulva prolifera distribution patterns. Moreover, we analysed the evolutionary trends and the driving factors determining these distribution patterns. The ACI-RF method exhibited exceptional performance, with an F1 score surpassing 0.95, outperforming alternative methods such as the support vector machine (SVM) and K-nearest neighbour (KNN) methods. Over the period from 2011 to 2022, excluding 2021, there was a notable decline in the area of Ulva prolifera green tides, varying between 397 and 2689.9 km2, with an average annual reduction rate of 3%. The maximum annual biomass varied between 0.12 and 15.9 kt. Notably, more than 75% of the area of Ulva prolifera green tides exhibited northward drift, which was significantly influenced by northern currents and wind fields. The regions most susceptible to Ulva prolifera green tides were observed in areas of water eutrophication. The analysis of driving factors shows that factors such as average sea surface temperature, eastward wind speed, northward wind speed, precipitation, PO4-, and N/P/Si significantly influence the biological growth rate of Ulva prolifera. Furthermore, coastal land use change and surface runoff in Jiangsu Province, particularly surface runoff in June, significantly impacted the growth rate of Ulva prolifera, with Pearson correlation coefficients of 0.74 and 0.67, respectively. Against the background of global warming and severe deterioration in the marine environment, Ulva prolifera blooms persist. Consequently, two distinct management strategies were proposed based on the distribution patterns and cause analysis results for addressing Ulva prolifera green tides: establishing a continuous protection framework for rivers, lakes, and nearshore areas to mitigate pollutant inputs and implementing precise environmental monitoring measures in urban expansion areas and farmlands to combat overgrowth-induced green tides. Leveraging the inherent advantages of remote sensing big data for rapid mapping, this methodology could be applied in other regions affected by marine ecological disasters. Additionally, the criteria for selecting influencing factors offer a valuable reference for designing tailored measures aimed at controlling Ulva prolifera green tides.

A phylogenomic reconstruction of the Endangered Malagasy tree genus Capurodendron (Sapotaceae) with nine new species and an identification key

Abstract Capurodendron is the second largest endemic genus of vascular plants in Madagascar. It comprises mainly trees that are frequently logged for their valued wood. This, together with deforestation, led to 76% of the known species being Endangered or Critically Endangered. However, a confident species identification is often not possible with the current available literature and many morphotypes do not fit any described taxa, which has impeded the implementation of conservation measures. We performed a phylogenomic revision studying c. 900 collections morphologically, and sequencing 638 nuclear genetic markers of 180 representative specimens up to 90 years old, including all the described species and some undescribed morphotypes. Our results show that Capurodendron may contain up to 21 undescribed species in addition to the 35 already known. Nine of these are confirmed as valid species supported by genetic, morphological, and ecological data, and we describe them here (Capurodendron ainae, C. ambanizanense, C. antilahimenae, C. christeae, C. nataliae, C. ratovosonii, C. razakamalalae, C. sommerae, and C. vulcanicola). For the remaining 12 candidate new species, three are genetically analysed but require more sampling, and nine are only supported by morphological and ecological data so far, and therefore require genetic analyses to confirm their validity. For practical purposes and to assist with conservation assessments we provide an identification key, based mainly on vegetative characters, that also include the undescribed species.

120-years of ecological monitoring data shows that the risk of overhunting is increased by environmental degradation for an isolated marine mammal population: The Baltic grey seal.

The Baltic Sea is home to a genetically isolated and morphologically distinct grey seal population. This population has been the subject of 120-years of careful documentation, from detailed records of bounty statistics to annual monitoring of health and abundance. It has also been exposed to a range of well-documented stressors, including hunting, pollution and climate change. To investigate the vulnerability of marine mammal populations to multiple stressors, data series relating to the Baltic grey seal population size, hunt and health were compiled, vital demographic rates were estimated, and a detailed population model was constructed. The Baltic grey seal population fell from approximately 90,000 to as few as 3000 individuals during the 1900s as the result of hunting and pollution. Subsequently, the population has recovered to approximately 55,000 individuals. Fertility levels for mature females have increased from 9% in the 1970s to 86% at present. The recovery of the population has led to demands for increased hunting, resulting in a sudden increase in annual quotas from a few hundred to 3550 in 2020. Simultaneously, environmental changes, such as warmer winters and reduced prey availability due to overfishing, are likely impacting fecundity and health. Future population development is projected for a range of hunting and environmental stress scenarios, illustrating how hunting, in combination with environmental degradation, can lead to population collapse. The current combined hunting quotas of all Baltic Nations caused a 10% population decline within three generations in 100% of simulations. To enable continued recovery of the population, combined annual quotas of less than 1900 are needed, although this quota should be re-evaluated annually as monitoring of population size and seal health continues. Sustainable management of long-lived slowly growing species requires an understanding of the drivers of population growth and the repercussions of management decisions over many decades. The case of the Baltic grey seal illustrates how long-term ecological time series are pivotal in establishing historical baselines in population abundance and demography to inform sustainable management.

Critical areas for sea turtles in Northeast Brazil: a participatory approach for a data-poor context.

Fishing is one of the main threats to sea turtles due to the risk of entanglement in lost nets, vessel collision and mortality due to incidental catches. In Brazil, most of the studies regarding fishing interactions with sea turtles are focused on pelagic longline fisheries in the South and Southeast regions. However, their main reproductive areas in Southwest Atlantic RMU occur in Northeast Brazil, which overlaps small-scale coastal gillnet fisheries. Here, we aimed to use ethnobiology and participatory approaches as simple and cost-effective methods to identify areas for sea turtle conservation where impacts from small-scale fisheries are most likely. Expert captains were trained to recording sea turtle sightings during navigations from the landing port to the fishing grounds, informing their folk nomenclatures. By interpolation of environmental data (chlorophyll and bathymetry) and ecological data, we predicted habitats of 3,459.96 km² for Caretta caretta, Chelonia mydas, and Eretmochelys imbricata and fishing zones of 1,087 km² for management in 20 m and 50 m depths. Our results contributes to ongoing discussions of bycatch mitigation for sea turtle species and identification of habitats. We highlights the importance of considering particularities of overlapped areas in marine spatial planning and co-management arrangements.

Recent genetic, phenetic and ecological divergence across the Mesoamerican highlands: a study case with Diglossa baritula (Aves: Thraupidae).

The topographical, geological, climatic and biodiversity complexity of Mesoamerica has made it a primary research focus. The Mesoamerican highlands is a region with particularly high species richness and within-species variation. The Cinnamon-bellied Flowerpiercer, Diglossa baritula (Wagler, 1832), is a species endemic to the Mesoamerican highlands, with three allopatric subspecies currently recognized. To characterize divergence within this species, we integrated genomics, morphology, coloration and ecological niche modeling approaches, obtained from sampling individuals across the entire geographic distribution of the species. Our results revealed a clear genomic divergence between the populations to the east versus the west of the Isthmus of Tehuantepec. In contrast to the genomic results, morphology and coloration analyses showed intermediate levels of differentiation, indicating that population groups within D. baritula have probably been under similar selective pressures. Our morphology results indicated that the only sexually dimorphic morphological variable is the wing chord, with males having a longer wing chord than females. Finally, ecological data indicated that there are differences in ecological niche within D. baritula. Our data suggest that D. baritula could contain two or more incipient species at the intermediate phase of the speciation continuum. These results highlight the importance of the geographical barrier of the Isthmus of Tehuantepec and Pleistocene climatic events in driving isolation and population divergence in D. baritula. The present investigation illustrates the speciation potential of the D. baritula complex and the capacity of Mesoamerican highlands to create cryptic biodiversity and endemism.

Population genetics and demography of the endemic mouse species of Cyprus, Mus cypriacus

AbstractMus cypriacus is one of three small palaeoendemic mammals that have survived the Mediterranean islands’ anthropization. This species, endemic to Cyprus, was described in 2006 and stands out as one of the last mammal species to have been discovered in Europe. Despite scarce data on its genetics, ecology, and life-history traits, Mus cypriacus is assessed as Least Concern LC in the IUCN Red List, partly due to its morphological similarity with the sympatric house mouse that prevented earlier identification. Our study uses mitochondrial and microsatellite markers to investigate this small rodent's population genetic structure and diversity. Our analysis did not identify any population genetic structure and suggested a high genetic diversity across Cyprus. When inferring habitat preference using sample locations, it appeared that M. cypriacus utilizes a diverse variety of habitats, covering more than 80% of the island. Although these results are encouraging for the conservation status of the species, they still need to be cautiously applied as potential threats may arise due to increasing habitat destruction and changes in land use. Consequently, our encouraging results should be applied judiciously. Additional ecological data are urgently needed to gain a more comprehensive understanding of this inconspicuous endemic species.

Entomovirological investigation of mosquitoes (Diptera: culicidae) in areas with yellow fever epizootics in Goiânia, Goias, Brazil

The objective of this investigation was to analyze the occurrence and natural infection of mosquitoes in areas with epizootics of non-human primates (NHP) confirmed for yellow fever in the municipality of Goiânia, Goiás, Brazil from November 2020 to April 2021. This is an ecological, descriptive, retrospective study, with quantitative and qualitative data on the mosquito fauna collected in 10 areas. A total of 2,787 Culicidae were collected and allocated in 8 genera and 23 species. Of the total specimens captured, 2,341 (84%) were females and 446 males (16%). Haemagogus janthinomys occurred in 2.7% (74) of the cases and Haemagogus leucocelaenus in 4.5% (125); Sabethes chlropterus occurred in 0.1% (3) of the cases, Sabethes albiprivus in 1% (28), and Sabethes glaucodaemon in 0.3% (8); Aedes aegypti occurred in 19.7% (548) and Aedes albopictus in 3.9% (108) of the cases. The Sa. glaucodaemon species was recorded for the first time in Goiânia. Yellow fever infection was not detected in the collected specimens. We conclude that the presence of wild vectors, in addition to potential urban vectors, enabled the classification of receptive and vulnerable areas to the circulation of the yellow fever virus.
 KEYWORDS: Entomological surveillance; vector mosquitoes; epizootics; yellow fever.

Socioenvironmental sugar promotion and geographical inequalities in dental health of 5-year-old children in England.

To investigate the relationship between socioenvironmental sugar promotion and geographical inequalities in the prevalence of dental caries amongst 5-year-olds living across small areas within England. Ecological data from the National Dental Epidemiology Programme (NDEP) 2018-2019, comprising information on the percentage of 5-year-olds with tooth decay (≥1 teeth that are decayed into dentine, missing due to decay, or filled), and untreated tooth decay (≥1 decayed but untreated teeth), in lower-tier local authorities (LAs) of England. These were analysed for association with a newly developed Index of Sugar-Promoting Environments Affecting Child Dental Health (ISPE-ACDH). The index quantifies sugar-promoting determinants within a child's environment and provides standardized scores for the index, and its component domains that is, neighbourhood-, school- and family-environment, with the highest scores representing the highest levels of sugar promotion in lower-tier LAs (N = 317) of England. Linear regressions, including unadjusted models separately using index and each domain, and models adjusted for domains were built for each dental outcome. Participants lived across 272 of 317 lower-tier LAs measured within the index. The average percentage of children with tooth decay and untreated tooth decay was 22.5 (SD: 8.5) and 19.6 (SD: 8.3), respectively. The mean index score was (0.1 [SD: 1.01]). Mean domain scores were: neighbourhood (0.02 [SD: 1.03]), school (0.1 [SD: 1.0]), and family (0.1 [SD: 0.9]). Unadjusted linear regressions indicated that the LA-level percentage of children with tooth decay increased by 5.04, 3.71, 4.78 and 5.24 with increased scores of the index, and neighbourhood, school and family domains, respectively. An additional model, adjusted for domains, showed that this increased percentage predicted by neighbourhood domain attenuated to 1.37, and by family domain it increased to 6.33. Furthermore, unadjusted models indicated that the LA-level percentage of children with untreated tooth decay increased by 4.72, 3.42, 4.45 and 4.97 with increased scores of the index, and neighbourhood, school, and family domains, respectively. The model, adjusted for domains, showed that this increased percentage predicted by neighbourhood domain attenuated to 1.24 and by family domain rose to 6.47. School-domain was not significantly associated with either outcome in adjusted models. This study reveals that socioenvironmental sugar promotion, particularly within neighbourhood- and family-environments, may contribute to geographical inequalities in dental caries in children. Further research involving data on individual-level dental outcomes and confounders is required.

Reconsidering the Price equation: Benchmarking the analytical power of additive partitioning in ecology

The Price approach allows the partitioning of composite variables into a set of additive components and has become an important tool in evolutionary and ecological research. However, because such components are not mutually independent and might be constrained by the inherent data structure, comparing and interpreting Price partitions among different datasets is not straightforward and has contributed to controversy in ecology.Here we discuss and develop null model approaches that might be used as statistical standards to normalise partition values and reduce collinearity between partitions. We use a simulation approach to estimate Price partitions of artificial data and their randomisations. Using structural equation modelling we then reveal the degree of collinearity between raw and standardised partitions.We first demonstrate that the degree of collinearity between partitions strongly depends on the data structure and then provide a general framework for null model selection. Null models that require limited additional information on the possible distribution of species richness and abundance perform best. These null models consistently reduce, but do not fully eliminate, collinearity between partitions. They assign separate type I and II error levels to each partition that differed among partitions.We argue in favour of null models that strike a balance between information need (simplicity) and complexity of additional information, but we discourage the use of simple permutation approaches that have been successful for analysing other biodiversity measures such as species richness. We highlight that the interpretation of additive partitions of complex ecological data will benefit from analyses of the dependence among partitions.

Evaluating the success of vegetation restoration in rewilded salt marshes

Floodbank realignment is a common practice aimed at restoring salt marsh vegetation on previously embanked land. However, experiences indicate that it may take several years before salt marsh vegetation becomes fully established. Various challenges arising from ecogeomorphic feedback mechanisms could pose significant setbacks to vegetation recolonization. The widespread adoption of transplantation techniques for the restoration and rehabilitation of rewilded landscapes has indeed proven to be a valuable tool for accelerating plant development. In the Ria Formosa coastal lagoon (South of Portugal), a pilot plan was implemented, and two salt marsh pioneer species, Spartina maritima (syn. Sporobolus maritimus) and Sarcocornia perennis (syn. Salicornia perennis), were transplanted from a natural salt marsh to a rewilded marsh. Biodegradable 3D porous structures were installed to mimic transplant clumping, aid sedimentation, and enhance the plant's initial adjustment. Ecological, sediment, and hydrodynamic data were collected during the 12-month pilot restoration plan. The environmental profiles of the donor and restoration sites were compared to substantiate the success of the transplants in the rewilded salt marsh.Results show that although plant shoot density decreased after the transplanting, Spartina maritima acclimated well to the new environmental conditions of the restoration site, showing signs of growth and cover increase, whilst Sarcocornia perennis was not able to acclimatize and survive in the restoration site. The failure behind the Sarcocornia perennis acclimation might be related to the bed properties and topographic properties of the restoration site in the rewilded marsh. Major findings contribute to a more comprehensive understanding of how salt marsh pioneering vegetation successfully colonizes disturbed habitats, facilitated using 3D-biodegradable structures.

Advances in environmental DNA monitoring: standardization, automation, and emerging technologies in aquatic ecosystems.

Environmental DNA (eDNA) monitoring, a rapidly advancing technique for assessing biodiversity and ecosystem health, offers a noninvasive approach for detecting and quantifying species from various environmental samples. In this review, a comprehensive overview of current eDNA collection and detection technologies is provided, emphasizing the necessity for standardization and automation in aquatic ecological monitoring. Furthermore, the intricacies of water bodies, from streams to the deep sea, and the associated challenges they pose for eDNA capture and analysis are explored. The paper delineates three primary eDNA survey methods, namely, bringing back water, bringing back filters, and bringing back data, each with specific advantages and constraints in terms of labor, transport, and data acquisition. Additionally, innovations in eDNA sampling equipment, including autonomous drones, subsurface samplers, and in-situ filtration devices, and their applications in monitoring diverse taxa are discussed. Moreover, recent advancements in species-specific detection and eDNA metabarcoding are addressed, highlighting the integration of novel techniques such as CRISPR-Cas and nanopore sequencing that enable precise and rapid detection of biodiversity. The implications of environmental RNA and epigenetic modifications are considered for future applications in providing nuanced ecological data. Lastly, the review stresses the critical role of standardization and automation in enhancing data consistency and comparability for robust long-term biomonitoring. We propose that the amalgamation of these technologies represents a paradigm shift in ecological monitoring, aligning with the urgent call for biodiversity conservation and sustainable management of aquatic ecosystems.

Diversity of marine benthic species of Nostocales (Cyanobacteria) in Veracruz, Mexico

Background: Nostocales is a widely distributed, monophyletic order of cyanobacteria, whose species are mainly characterized by the presence of specialized structures such as heterocytes and akinetes. Despite being the most diverse group in marine environments, little is known about coastal species in Mexico. Particularly in Veracruz, only 17 species have been recorded, without photographic, morphological references, or ecological data; these records are only mentioned in floristic lists.
 Questions and / or Hypotheses: The present study aimed to contribute to the knowledge of the diversity of benthic marine Nostocales species in Veracruz, Mexico, as well as to provide detailed descriptions and illustrations of the species found, which can serve as a reference in subsequent studies.
 Study site and dates: Collect of cyanobacterial growths were made in three locations throughout Veracruz in 2020.
 Methods: The organisms were isolated from the field material. With the use of specialized taxonomic keys, they were morphologically identified, described and photographed.
 Results: A total of 20 Nostocales species were obtained, of which 17 were additions to the phycoflora of Veracruz, constituting an increase of 55 %. Taxonomic notes are added highlighting their differences with the literature. One of the species was identified as cf. and seven as sp., because their characteristics fully coincided with the generic morphology, but did not completely concur with the literature.
 Conclusions: These suggest that several records could correspond to new taxon not yet described that must be confirmed with different molecular markers.

Ecological predictors of organelle genome evolution: Phylogenetic correlations with taxonomically broad, sparse, unsystematized data.

Comparative analysis of variables across phylogenetically linked observations can reveal mechanisms and insights in evolutionary biology. As the taxonomic breadth of the sample of interest increases, challenges of data sparsity, poor phylogenetic resolution, and complicated evolutionary dynamics emerge. Here, we investigate a cross-eukaryotic question where all these problems exist: which organismal ecology features are correlated with gene retention in mitochondrial and chloroplast DNA (organelle DNA or oDNA). Through a wide palette of synthetic control studies, we first characterize the specificity and sensitivity of a collection of parametric and non-parametric phylogenetic comparative approaches to identify relationships in the face of such sparse and awkward datasets. This analysis is not directly focused on oDNA, and so provides generalizable insights into comparative approaches with challenging data. We then combine and curate ecological data coupled to oDNA genome information across eukaryotes, including a new semi-automated approach for gathering data on organismal traits from less systematized open-access resources including encyclopedia articles on species and taxa. The curation process also involved resolving several issues with existing datasets, including enforcing clade-specificity of several ecological features and fixing incorrect annotations. Combining this unique dataset with our benchmarked comparative approaches, we confirm support for several known links between organismal ecology and organelle gene retention, identify several previously unidentified relationships constituting possible ecological contributors to oDNA genome evolution, and provide support for a recently hypothesized link between environmental demand and oDNA retention. We, with caution, discuss the implications of these findings for organelle evolution and of this pipeline for broad comparative analyses in other fields.

Shallow Hard-Bottom Benthic Assemblages of South Bay (Antarctic Peninsula): An Update 40 Years Later

This work completes and updates the information about the diversity and distribution of benthic assemblages in an Antarctic fjord (South Bay, Antarctic Peninsula) 40 years after the first and only community-level study was conducted there. To determine the community changes, a photographic survey was conducted at four sites with different substrate inclinations along a bathymetric gradient of 5–20 m depth. In total, 160 photoquadrats were analyzed, resulting in a total area of 40 m2. Sixty taxa represented by 12 phyla were identified, of which eight phyla corresponded to animals. The remaining species corresponded to macroalgae and benthic diatoms, both taxa presenting the highest coverages of the entire study area. The highest richness and diversity values were obtained at greater depths and at the sites with the steepest slopes. Here, we discuss the role of substrate inclination and depth in the structure of the benthic assemblages concerning possible variations in the presence and frequency of physical disturbances (e.g., ice disturbance and sedimentation). The abundances, densities, and distributions of all species found are detailed, updating the ecological data of the benthic ecosystem of this Antarctic fjord from the previously published assessment four decades ago. In a continent where rapid environmental changes are being experienced due to climate-induced processes, we discuss the first massive record of benthic diatoms in this fjord and the striking absence of the sea urchin Sterechinus neumayeri, an abundant species from previous records from the early 1980s.