The dynamics of atomic force microscope (AFM) acting in contact mode is crucial for correct interpretation of AFM images and especially for the identification of artefacts and the determination of their sources. This paper presents a methodology for the interpretation and improvement of the AFM image quality. The developed AFM dynamic model has been applied for the control of scanning parameters to achieve superior image quality. The model provides possibility to tune AFM parameters, such as tip-surface interaction force and scanning speed in respect of the sample’s material and cantilever’s tip geometry. This methodology allows us to ensure the ideal imaging conditions, to evaluate AFM images and to produce a superior picture quality. Using this model, we can also analyze experimental data and simulate the experimental results.