Based on the principal component analysis and k-means cluster analysis, the paper classified and analyzed the 310 stations of the Beijing subway. According to data such as the number of people entering and leaving each station of the Beijing Metro, the line to which the station belongs, and whether it is a transfer station by period. We selected a total of 52-time variables to participate in the PCA analysis and finally got two principal components and named them principal component 1 and principal component 2. Subsequently, we clustered the Principal Component 1 and Principal Component 2 scores of 310 sites and the latitude and longitude of the sites in k-means clustering. According to the elbow method and the contour coefficient, the final clustering results into five clusters are classified. The five clusters of stations have strong regional characteristics, and the stations of each type are more concentrated. The results of principal component analysis and cluster analysis have passed the test and have good convincing power. Finally, we conduct an in-depth analysis of the two categories with the most stations. Cluster 4 contains the largest number of stations, located in the core area of Beijing's urban area, and the passenger flow is significantly higher than other areas. Cluster 1 contains the second largest number of stations, mainly including Fengtai District. The region's economy is underdeveloped, the passenger flow is small, and there are peak and trough periods. This paper performs cluster analysis on high-dimensional data. The principal component analysis is used to reduce the dimension of high-dimensional data and retain the time and space dimensions required for clustering. The final result was in line with expectations. It is improved the shortcomings of k-means clustering for high-dimensional data. This article analyzes the daily passenger flow in Beijing, and the analysis results may be random. In the subsequent analysis, more data can be added to make the analysis more accurate.