Differences In Fungal Community Composition Research Articles

Pollen products collected from honey bee hives experiencing minor stress have altered fungal communities and reduced antimicrobial properties.

Fungi are increasingly recognised to play diverse roles within honey bee hives, acting as pathogens, mutualists, and commensals. Pollen products, essential for hive nutrition, host significant fungal communities with potential protective and nutritional benefits. In this study, we profile the fungal communities and antifungal properties of three pollen products from healthy and stressed hives: fresh pollen collected by forager bees from local plants; stored pollen packed into the comb inside the hive; and bee bread, which is stored pollen following anaerobic fermentation used for bee and larval nutrition. Using amplicon sequencing, we found significant differences in fungal community composition, with hive health and sample type accounting for 8.8% and 19.3% of variation in beta diversity, respectively. Pollen and bee bread extracts had species-specific antimicrobial activity and inhibited the fungal hive pathogens Ascosphaera apis, Aspergillus flavus, and Aspergillus fumigatus, and the bacterial hive pathogen Paenibacillus larvae. Activity was positively correlated with phenolic and antioxidant content and was diminished in stressed hives. The plant source of pollen determined by amplicon sequencing differed in stressed hives, suggesting altered foraging behaviour. These findings illustrate the complex interplay between honey bees, fungal communities, and hive products, which should be considered in hive management and conservation.

Metabarcode insights into the airborne fungal diversity in the indoor and outdoor environments in archives from Yunnan, Southwestern China.

Monitoring dynamics of airborne fungal species and controlling of harmful ones are of vital importance to conservation of cultural relics. However, the evaluation of air quality and the community structure characteristics of microorganisms, especially fungi, in the atmosphere of archives is in a stage of continuous exploration though more than 4,000 archives were constructed in China. Seventy-two air samples were collected in this study under different spatial and weather conditions from the archives of Kunming Medical University, located in the Kunming metropolitan area, Yunnan province, southwestern China. A total of 22 airborne fungal classes, 160 genera and 699 ASVs were identified, the species diversity is on the rise with the strengthening of air circulation with the outside space, and thus the intensive energy metabolism and activity were found in the spaces with window and sunny weather, except for the higher lipid synthesis of indoor samples than that of outdoor ones. Furthermore, there were significant differences in fungal community composition and abundance between sunny and rainy weathers. A considerable number of species have been identified as indicator in various environmental and weather conditions of the archives, and temperature and humidity were thought to have significant correlations with the abundance of these species. Meanwhile, Cladosporium and Alternaria were the dominant genera here, which may pose a threat to the health of archive professionals. Therefore, monitoring and controlling the growth of these fungal species is crucial for both conservation of paper records and health of archive professionals.

Combined Application Effects of Arbuscular Mycorrhizal Fungi and Biochar on the Rhizosphere Fungal Community of Allium fistulosum L.

Arbuscular mycorrhizal fungi (AMF) are widespread soil endophytic fungi, forming mutualistic relationships with the vast majority of land plants. Biochar (BC) has been reported to improve soil fertility and promote plant growth. However, limited studies are available concerning the combined effects of AMF and BC on soil community structure and plant growth. In this work, a pot experiment was designed to investigate the effects of AMF and BC on the rhizosphere microbial community of Allium fistulosum L. Using Illumina high-throughput sequencing, we showed that inoculation of AMF and BC had a significant impact on soil microbial community composition, diversity, and versatility. Increases were observed in both plant growth (the plant height by 8.6%, shoot fresh weight by 12.1%) and root morphological traits (average diameter by 20.5%). The phylogenetic tree also showed differences in the fungal community composition in A. fistulosum. In addition, Linear discriminant analysis (LDA) effect size (LEfSe) analysis revealed that 16 biomarkers were detected in the control (CK) and AMF treatment, while only 3 were detected in the AMF + BC treatment. Molecular ecological network analysis showed that the AMF + BC treatment group had a more complex network of fungal communities, as evidenced by higher average connectivity. The functional composition spectrum showed significant differences in the functional distribution of soil microbial communities among different fungal genera. The structural equation model (SEM) confirmed that AMF could improve the microbial multifunctionality by regulating the rhizosphere fungal diversity and soil properties. Our findings provide new information on the effects of AMF and biochar on plants and soil microbial communities.

Gut mycobiome dysbiosis and its impact on intestinal permeability in attention-deficit/hyperactivity disorder.

Dysbiosis in the gut microbial community might be involved in the pathophysiology of attention-deficit/hyperactivity disorder (ADHD). The fungal component of the gut microbiome, namely the mycobiota, is a hyperdiverse group of multicellular eukaryotes that can influence host intestinal permeability. This study therefore aimed to investigate the impact of fungal mycobiome dysbiosis and intestinal permeability on ADHD. Faecal samples were collected from 35 children with ADHD and from 35 healthy controls. Total DNA was extracted from the faecal samples and the internal transcribed spacer regions were sequenced using high-throughput next-generation sequencing (NGS). The fungal taxonomic classification was analysed using bioinformatics tools and the differentially expressed fungal species between the ADHD and healthy control groups were identified. An in vitro permeability assay (Caco-2 cell layer) was used to evaluate the biological effects of fungal dysbiosis on intestinal epithelial barrier function. The β-diversity (the species diversity between two communities), but not α-diversity (the species diversity within a community), reflected the differences in fungal community composition between ADHD and control groups. At the phylum level, the ADHD group displayed a significantly higher abundance of Ascomycota and a significantly lower abundance of Basidiomycota than the healthy control group. At the genus level, the abundance of Candida (especially Candida albicans) was significantly increased in ADHD patients compared to the healthy controls. In addition, the in vitro cell assay revealed that C. albicans secretions significantly enhanced the permeability of Caco-2 cells. The current study is the first to explore altered gut mycobiome dysbiosis using the NGS platform in ADHD. The findings from this study indicated that dysbiosis of the fungal mycobiome and intestinal permeability might be associated with susceptibility to ADHD.

Temporal dynamics of ectomycorrhizal fungal communities in Shorea siamensis forest fragments

Investigating the dynamics of ectomycorrhizal fungal (EMF) communities in seasonally dry tropical forests is essential for sustainable management and for understanding the resilience of this forest type in future climate change scenarios. EMF communities in secondary forest fragments with Shorea siamensis as a single host tree species in central Thailand were sampled seasonally for 2.5 y. Ten EMF taxa were identified from ectomycorrhizal morphotypes, with/tomentella-thelephora and/russula-lactarius as the dominant taxa. Seasonal differences in EMF diversity were not detected; the dominant morphotypes were present in both seasons and their abundance varied. Most EMF taxa exhibited wide environmental ranges and only a few taxa were correlated with soil moisture. Seasonal dynamics of ectomycorrhizal colonization was likely influenced by climatic factors and the phenology of host species. Together, these results suggested that climatic variation may have a long-term and subtle influence on the composition of ectomycorrhizal communities. • Ectomycorrhizal fungi in secondary Shorea siamensis forest fragments in Thailand. • Fungal taxa were common species found in deciduous dipterocarp forests. • Lack of seasonal differences in fungal community composition. • Root number and ectomycorrhizal colonization were influenced by precipitation. • Broad environmental ranges of ectomycorrhizal fungi imply resilience.

The response of sugar beet rhizosphere micro-ecological environment to continuous cropping.

Continuous cropping can lead to increased soil-borne diseases of sugar beet (Beta vulgaris L.), resulting in a reduction in its yield quality. However, our understanding of the influence of continuous cropping on sugar beet-associated microbial community is limited and their interactions remain unclear. Here, we described and analyzed microbial diversity (N = 30) from three sugar beet belowground compartments (bulk soil, rhizosphere soil, and beetroot) using 16S rRNA and ITS sequencing. The continuous cropping showed lower bacterial alpha diversity in three belowground compartments and higher fungal alpha diversity in roots compared to the non-continuous cropping. There were significant differences in fungal community composition between the two groups. Compared with non-continuous cropping, continuous cropping increased the relative abundance of potentially pathogenic fungi such as Tausonia, Gilbellulopsis, and Fusarium, but decreased the relative abundance of Olpidium. The fungal flora in the three compartments displayed different keystone taxa. Fungi were more closely related to environmental factors than bacteria. Overall, changes in microbial diversity and composition under continuous cropping were more pronounced in the fungal communities, and the results of the study could guide development strategies to mitigate continuous crop adversity.

Seasonal variations of soil fungal diversity and communities in subalpine coniferous and broadleaved forests

Soil fungi have essential roles in ecosystems, but the seasonal dynamics of soil fungal communities in forests remain unclear. To explore the pattern and variation of soil fungal community diversity and structural composition across forest types and seasons, and identify the main contributors to soil fungal communities, we collected soil samples from subalpine coniferous (Picea asperata and Larix gmelinii) and broadleaved plantations (Betula albosinensis and Quercus aquifolioides) in southwest China in different seasons. Soil fungal community structural composition was determined using the Illumina MiSeq sequencing platform. The results showed that soil fungal diversity and richness in broadleaved forests were higher than in conifer forests. From heatmap cluster analysis, distinct differences in fungal community composition among forest types (coniferous and broadleaved forests) and seasons (May and July, September) were observed. Fungal communities were dominated by Basidiomycota and Ascomycota regardless of forest type and season. Helotiales and Atheliales were abundant in coniferous forests, while Agaricales, Russulales and Thelephorales predominated in broadleaved forests. Fungal community diversity and composition were significantly driven by soil pH, moisture, organic carbon, ammonium (NH4+-N), fine root biomass and root tissue density, when controlling for the effects of forest type and season. Thus, forest type and season significantly affected soil fungal community diversity and composition by altering soil properties and root variables.

Laboratory conditions can change the complexity and composition of the natural aquatic mycobiome on Alnus glutinosa leaf litter

Community structure is of major interest when aquatic fungi are studied, particularly in leaf decomposition experiments. Although such studies are often conducted as laboratory experiments with microbial communities taken from the field, it remains unclear to what extent natural fungal communities can be sustained under experimental conditions. Here, we used DNA metabarcoding to investigate the development of fungal communities on alder leaves both under laboratory and field conditions. Five leaf conditioning treatments were compared by colonizing leaves in a stream, exposing stream colonized leaves to a defined medium or filtered stream water and using stream colonized leaves to inoculate sterile leaves in the defined medium or stream water. Fewer species were found on leaves that were inoculated under laboratory conditions, whereas differences in fungal community composition were comparably low in the other treatments, irrespective of the chosen medium. Possible shifts in fungal communities should therefore be considered in laboratory experiments. • A high taxonomic resolution was achieved during in depth analysis of the mycobiome. • Fewer species were found on leaves inoculated under laboratory conditions. • Low community changes appeared in treatments with stream conditioned leaves. • Only low differences in community composition were found between chosen media.

Effect of Bacterial Wilt on Fungal Community Composition in Rhizosphere Soil of Tobaccos in Tropical Yunnan.

Bacterial wilt, which is a major soil-borne disease with widespread occurrence, poses a severe danger in the field of tobacco production. However, there is very limited knowledge on bacterial wilt-induced microecological changes in the tobacco root system and on the interaction between Ralstonia solanacearum and fungal communities in the rhizosphere soil. Thus, in this study, changes in fungal communities in the rhizosphere soil of tobaccos with bacterial wilt were studied by 18S rRNA gene sequencing. The community composition of fungi in bacterial wilt-infected soil and healthy soil in two tobacco areas (Gengma and Boshang, Lincang City, Yunnan Province, China) was studied through the paired comparison method in July 2019. The results showed that there were significant differences in fungal community composition between the rhizosphere soil of diseased plants and healthy plants. The changes in the composition and diversity of fungal communities in the rhizosphere soil of tobaccos are vital characteristics of tobaccos with bacterial wilt, and the imbalance in the rhizosphere microecosystem of tobacco plants may further aggravate the disease.

The Fibrolytic Enzyme Profiles and the Composition of Fungal Communities in Donkey Cecum-Colon Ecosystem.

Simple SummaryThe donkey hindgut is a microbial-rich ecosystem in which caecum and colon fungi play an important role in dietary fiber degradation. In addition, the fibrolytic enzymes produced by hindgut microorganisms are key to the ability of equines to hydrolysis plant fiber. In the present study, the fibrolytic enzyme activities within donkey caecum and colon were firstly measured by spectrophotometry. The dorsal colon presented a higher fibrolytic enzyme activity in comparison with caecum. The fungal community composition along donkey caecum and colon was determined by sequencing an internal transcribed spacer region (ITS) using Illumina MiSeq. The predominant fungi at phylum level were Ascomycota, Basidiomycota, and Neocallimastigomycota. The Aspergillus, Wallemia, Phanerochaete, Fusarium, and Penicillium were detected as the dominant genera, but their metabolic and functional significance in donkey cecum-colon ecosystem need further investigation. In terms of the anaerobic fungi Neocallimastigomycota, its abundance was greater in donkey colon than in caecum. The relative abundance of enzymes related to plant cell wall breakdown were also predicted by PICRUSt, and they were also greater in donkey colon than in caecum. The present study provided new information about fibrolytic enzyme profiles and fungal communities in donkey hindgut. The findings could therefore contribute to the further understanding of the fungal taxa and their dietary fiber degradation mechanisms in donkey hindgut ecosystem.The fibrolytic enzymes and the hindgut fungi in donkey cecum-colon ecosystem play an important role in dietary fiber digestion. A better understanding of the fibrolytic enzyme profiles and the fungal community along donkey caecum and colon is key for optimizing hindgut function. In the present study, the fibrolytic enzyme activities within donkey caecum and colon were firstly measured by spectrophotometry. Activities of carboxymethyl cellulase, avicelase, xylanase, and acetyl esterase were greater in donkey dorsal colon than in caecum, indicating that the colon microorganisms may be more efficient in producing fibrolytic enzymes compared to caecum microbes. The fungal community composition along donkey hindgut was determined by sequencing ITS region using Illumina MiSeq. Three fungal phyla were identified by sequence comparison: Ascomycota (66.8%–74.4%), Basidiomycota (21.6%–30.9%), and Neocallimastigomycota (0.9%–3.3%). The Aspergillus, Wallemia, Phanerochaete, Fusarium, and Penicillium were detected as the dominant genera, but their metabolic and functional significance in donkey cecum-colon ecosystem need further investigation. In terms of the anaerobic fungi Neocallimastigomycota, its abundance was greater in donkey colon than in caecum (p < 0.05), indicating that the donkey hindgut region was associated with differences in fungal community composition. Moreover, the relative abundance of enzymes related to plant cell wall degradation were predicted by PICRUSt, and they were also lower in caecum than in colon. The present study provided new information about fibrolytic enzyme profiles and fungal composition in donkey hindgut ecosystem.

Nitrogen Fertiliser Immobilisation and Uptake in the Rhizospheres of Wheat and Canola

Immobilisation of fertiliser nitrogen (N) by soil microorganisms can reduce N availability to crops, decreasing growth and yield. To date, few studies have focussed on the effect of different plant species on immobilisation of fertiliser N. Canola (Brassica napus) is known to influence the soil microbiome and increase mineral N in soil for future crops compared with cereals. We tested the hypothesis that canola can reduce immobilisation of fertiliser N by influencing the composition of the rhizosphere microbiome. To investigate this, we conducted a glasshouse soil column experiment comparing N fertiliser uptake between canola and wheat (Triticum aestivium) and partitioning of fertiliser N between plants and microorganisms. Plants were grown in soil to which high C:N ratio wheat residues and 15N-labelled urea fertiliser were applied. There was no difference between wheat and canola in fertiliser N uptake despite differences in fungal community composition and the carbon metabolising enzyme alpha-glucosidase in the rhizosphere. Canola obtained more soil-derived N than wheat. There was no significant difference in the rhizosphere bacterial communities present between wheat and canola and unplanted controls. Our results highlight the capacity of canola to increase mineralisation of soil N compared with wheat although the study could not describe the microbial community which facilitated this increase.

Land‐use history alters the diversity, community composition and interaction networks of ectomycorrhizal fungi in beech forests

Abstract Forests have expanded across Europe over the last centuries as a consequence of farmland (agricultural and pasture) abandonment. Agricultural practices usually increase soil fertility and reduce the diversity and abundance of ectomycorrhizal (ECM) fungi, essential mutualists of many woody species in temperate and Mediterranean forests. The recovery of this biotic interaction after the cessation of human activities is, thus, crucial for the re‐establishment of functional forest ecosystems. Here we addressed the legacies of past land use and the recovery of the mutualism between ECM fungi and Fagus sylvatica trees in recent beech forests (&lt;50 years) in Northeast Spain. Soil and root samples were collected in six long‐established and eight recent beech forests to analyse soil abiotic properties and the ECM fungi associated with beech roots (Illumina DNA metabarcoding of ECM tips). Up to 609 amplicon sequence variants (ASVs) of ECM fungi were identified, with 220 ASVs found in both forest types. Recent forests had a significantly lower soil organic matter and phosphorus content, which had a significant effect on the community structure of ECM fungi in beech roots. Moreover, beech trees in recent forests interacted with less fungal taxa but had a higher relative abundance of Ascomycota. Tarzetta spp. (Ascomycota, Pezizales) and Lactarius blennius (Basidiomycota, Russulales) emerge as the particular taxa associated with recent and long‐established forests respectively. More specialized mutualistic networks with a lower species normalized degree were found in recent forests, which might result in a lower quality and resilience of the ECM mutualism. Synthesis. Land‐use history modulated the mycorrhizal symbiosis in regenerating beech forests through changes in soil organic matter and nitrogen, which were the main drivers of the differences in fungal community composition and functional types associated with beech trees in recent forests.

The Effects of Earthworms on Fungal Diversity and Community Structure in Farmland Soil With Returned Straw.

BackgroundTo promote the decomposition of returned straw, reduce the incidence of soil-borne diseases caused by returned straw, and accelerate the conversion of straw carbon into soil carbon, we inoculated earthworms into fields with returned straw. The earthworms accelerated straw degradation and promoted carbon conversion. However, the impact of externally inoculated earthworms on the farmland soil ecosystem, especially the structure and the function of its microbial community, remains unclear.MethodsWe analyzed the effects of straw return and earthworms on the diversity of fungal populations and the community structure of dominant fungal taxa in soil by quantifying fungal population size and community composition via PCR amplification of internal transcribed spacer genes and 18S rRNA gene sequencing.ResultsThe results showed that earthworm inoculation significantly accelerated the degradation of rice straw and promoted the conversion of straw carbon to soil carbon. Both fungal abundance and α-diversity (Sobs and Shannon indices) were higher in the plots with surface straw but without earthworms than in those inoculated with earthworms and in the CK. Principal component analysis indicated that straw return increased the diversity and the abundance of the fungal community, whereas earthworms inhibited this expansion of the fungal community caused by straw return. Interestingly, the overall differences in fungal community composition were smallest in plots with straw return, while the dominant fungal community features in plots inoculated with earthworms were closer to those of the CK.ConclusionGenerally, straw return stimulated unclassified_K_fungi, Pseudeurotium, and Fusarium with strong cellulolytic ability. In contrast, the abundances of Stachybotrys, unclassified_c_Sordariomycetes, unclassified_f_Lasiosphaeriaceae, and Schizothecium were higher in the plots inoculated with earthworms and in the CK. Furthermore, evolutionary analysis showed that the evolution of soil fungal communities tended to diverge after straw return, and the evolutionary directions of fungal species in the plots inoculated with earthworms were similar to those in the CK.

Dynamics of Skin Mycobiome in Infants.

Understanding the microbial community structure of the human skin is important for treating cutaneous diseases; however, little is known regarding skin fungal communities (mycobiomes). The aim of the present study was to investigate the features of and variations in skin fungal communities during infancy in 110 subjects less than 6 months of age. Skin samples were obtained from the back, antecubital fossa, and volar forearm, while physiological parameters including transepidermal water loss, pH, surface moisture, and deep layer hydration were evaluated. Skin fungal diversity decreased after the first three months of life. Differences in fungal community composition were greater among individual infants than among the three skin sites in the same individual. Inter- and intra-individual variation were similar and lower, respectively, than the variability between two samples obtained 12 weeks apart, from the same site in the same subject, suggesting low stability of fungal communities on infant skin. Skin physiological parameters showed little correlation with skin fungal community structure. Additionally, Malassezia was the most represented genus (36.43%) and M. globosa was the most abundant species in Malassezia with its abundance decreasing from 54.06% at 0–2 months to 34.54% at 5–6 months. These findings provide a basis for investigating the causative fungi-skin interactions associated with skin diseases.

Individual Plant-Soil Feedback Effects Influence Tree Growth and Rhizosphere Fungal Communities in a Temperate Forest Restoration Experiment

Plant-soil feedbacks and the soil legacy effects that create them have important implications for community composition and restoration. However, relatively few field trials test the influence of soil legacy effectsplant-soil feedbacks, especially on longer-lived species, such as trees. Here we present a field restoration experiment with 10 ectomycorrhizal fungal tree species native to eastern North America. Trees were inoculated with soils collected from conspecifics in the field or from a heterospecific: Quercus rubra. Fagus grandifolia stem elongationFollowing 16 months of growth in the field, Carya ovata diameter increase was significantly increased greater in trees receiving the by heterospecific inoculant.tion following 16 months of growth in the field, and Tthis negative plant-soil feedback is consistent with its C. ovata’s natural co-occurrence with Q. rubra. Conversely, Quercus macrocarpa diameter increase and Carya cordiformis height increase were was significantly greater when inoculated with conspecific soils, and this positive plant-soil feedback is consistent with its their numerical dominance in natural communities. We found no evidence for phylogenetic Janzen-Connell effects or conservation of soil mutualists across tree species. We also quantified differences in soil fungal community structure with next generation sequencing methods (Illumina MiSeq) following 16 months in the field. Shannon’s diversity of fungal taxa was greater in heterospecific soils of seven of our nine experimental species, consistent with a diversifying influence of heterospecific Quercus rubra soil inocula. However, only one genus, Ulmus, exhibited differences in fungal community composition derived from conspecific and heterospecific sources, suggesting a stronger effect of focal tree species than of soil inocula source. The relatedness among focal tree species also influenced fungal community composition, with tree families and genera displaying different fungal communities. We suggest that future experiments should determine whether more diverse tree and fungal communities might have enhanced ecosystem functioning in tree restoration sites.

The Missing Metric: An Evaluation of Fungal Importance in Wetland Assessments

To preserve wetland ecosystem function, federal and state agencies have developed assessment procedures to better manage remaining wetland areas. Currently, wetland assessments do not consider microorganisms when determining wetland quality. This is notable, because fungi are often the primary decomposers of organic material and thus important players in nutrient cycling. The objective of this study is to quantify how wetland quality, as measured using the Ohio Rapid Assessment Method (ORAM), relates to fungal community composition. We sampled soils from six depressional emergent marshes in Ohio belonging to each of the three ORAM quality categories, assessed soil physicochemical properties, and recovered fungal DNA. We then determined if wetland quality as expressed by the ORAM reflects soil health. Our results indicate that ORAM scoring methodology significantly explains differences in fungal community composition between wetlands. We also found that soil physicochemical properties not currently included in the ORAM are strong drivers of fungal community composition, particularly bulk density, pH, soil organic matter, and soil moisture. Overall, our results suggest fungal community composition reflects wetland quality as assessed by the ORAM, and that the ORAM and potentially other wetland assessments could better capture the soil environment by including easily measured soil physicochemical properties.

Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands

Green islands (the re-greening of senescent leaf tissues) are particularly evident on leaves infected with fungal pathogens. To date, there is only a limited number of studies investigating foliar endophytic microorganisms in phytopathogen-infected leaves. Here, we analysed bacterial and fungal endophyte communities in leaves without green islands (control leaves; CL), within green island areas (GLA) and the surrounding yellow leaf areas (YLA) of leaves with green islands of Acer campestre and A. platanoides. GLA samples of A. campestre and A. platanoides were dominated by Sawadaea polyfida and S. bicornis, respectively, suggesting that these fungi might be responsible for the green islands. We detected a higher fungal richness and diversity in CL compared to GLA samples of A. campestre. Leaf status (CL, GLA, YLA) significantly altered the composition of fungal communities of A. campestre. This was related to differences in fungal community composition between YLA and GLA samples. Site was the main driver of bacterial communities, suggesting that bacterial and fungal endophytes are shaped by different factors. Overall, we observed Acer species-specific responses of endophyte communities towards the presence of green islands and/or leaf type, which might be attributed to several fungi and bacteria specifically associated with one Acer species.

EXAMINATION OF FUNGAL DIVERSITY PRESENT ON MEXICAN FREE-TAILED BATS, TADARIDA BRASILIENSIS MEXICANA, IN COLORADO

We surveyed a summer population of Tadarida brasiliensis mexicana in south-central Colorado to gain an initial characterization of the resident mycobiome (i.e., fungal biota) present on their body surfaces. We cultured fungal spores from bats captured in early and late summer and then conducted DNA barcoding analysis for taxonomic identification. Phylum Ascomycota dominated the ectomycotal (i.e., fungi present on body surfaces) community, with the most common genera including Aspergillus, Penicillium, Cladosporium, and Eurotium. Phylum Basidiomycota constituted a smaller proportion of fungal isolates and was composed primarily of Cryptococcus, Peniophora, Cystofilobasidium, and Sistotrema. We found seasonal differences in fungal community composition, with diversity and evenness increasing from June to August. There were notable differences in fungal communities present on adult vs. juvenile bats, with juveniles having a greater number of unique genera, greater fungal diversity, and lower species evenness compared with adults. We isolated a number of fungal species that are capable of growing at low temperatures, indicating that T. b. mexicana harbors viable psychrophilic fungi.

Characterization of fungal biodiversity and communities associated with the reef macroalga Sargassum ilicifolium reveals fungal community differentiation according to geographic locality and algal structure

Marine environments abound with opportunities to discover new species of fungi even in relatively well-studied ecosystems such as coral reefs. Here, we investigated the fungal communities associated with the canopy forming macroalga Sargassum ilicifolium(Turner) C. Argardh (1820) in Singapore. We collected eight S. ilicifolium thalli from each of eight island locations and separated them into three structures—leaves, holdfast and vesicles. Amplicon sequencing of the fungal internal transcribed spacer 1 (ITS1) and subsequent analyses revealed weak but significant differences in fungal community composition from different structures. Fungal communities were also significantly different among sampling localities, even over relatively small spatial scales (≤ 12 km). Unsurprisingly, all structures from all localities were dominated by unclassified fungi. Our findings demonstrate the potential of marine environments to act as reservoirs of undocumented biodiversity that harbour many novel fungal taxa. These unclassified fungi highlight the need to look beyond terrestrial ecosystems in well-studied regions of the world, and to fully characterize fungal biodiversity in hotspots such as Southeast Asia for better understanding the roles they play in promoting and maintaining life on our planet.

Plant geographic origin and phylogeny as potential drivers of community structure in root‐inhabiting fungi

Abstract Root‐inhabiting fungal communities, including mutualists and antagonists, influence host plant performance, and can potentially shape plant community composition. However, there is uncertainty about how root‐inhabiting fungal communities are structured, and if fungal community characteristics are significant predictors of host plant abundance. In this study, we first assessed how root‐inhabiting fungal communities were structured in relation to the phylogeny and geographic origins (native vs. exotic) of their host plants in an old‐field community. In addition, we took into consideration the spatial arrangements (i.e. physical locations) of the individual host plants. We then tested if the relative abundances of pathogenic and beneficial arbuscular mycorrhizal (AM) fungi could predict host plant abundances. We found that host plant phylogeny was an important factor in structuring the whole fungal community, irrespective of host plant origin. Furthermore, the spatial arrangements of individual host plants were a strong predictor of AM fungal community structure. Host plant phylogeny and spatial arrangements appeared to similarly affect the structure of pathogenic fungal communities. No distinct differences were observed between native and exotic plant species in fungal community characteristics. The relative abundances of AM and pathogenic fungi were not significant predictors for observed abundances of their host plants. Synthesis. Host plant phylogeny and spatial arrangements can structure naturally occurring root‐inhabiting fungal communities. The absence of distinct differences in fungal community composition, including pathogens, in exotic and native plants suggests long residence times and the consequent naturalization of exotic species in the region, allowing for the establishment of similar plant–microbial interactions between native and exotic species.