Habitat diversity plays a crucial role in shaping the structure and distribution of benthic macroinvertebrate communities. However, few studies have investigated the concurrent effects of such drivers operating at different spatial scales in mountain streams. Here, we assessed which environmental factors at different spatial scales, related to stream/river type and substrate, influence the diversity of benthic macroinvertebrate assemblages in mountain streams and rivers. Within the framework of the aquatic investigations of the Biodiversity Monitoring South Tyrol (BMS) – a newly-established, regional-based, long-term biodiversity monitoring program – benthic macroinvertebrates and a set of environmental factors describing water quality, stream/river hydromorphology and in-stream habitat characteristics were collected and analysed. The variation in total density, taxonomic richness, Shannon evenness and % Ephemeroptera–Plecoptera–Trichoptera taxa of stream benthic macroinvertebrates was assessed at multi-scale habitat levels, in 48 sampling sites across the mountainous region of the Autonomous Province of Bolzano/Bozen (Italy). The effects of stream/river type, substrates and different environmental factors on community composition of benthic macroinvertebrates were quantified, using a stepfoward Redundancy Analysis (RDA) and generalized additive models (GAMs). In addition, we performed an Indicator Value analysis to detect taxa that were significantly associated with a specific substrate and/or stream/river type. Overall, we observed significant differences in benthic biological metrics among both stream/river and substrate types. We also found at least one indicator taxa for each stream/river type, with environmental factors acting at reach and large-spatial scale – temperature, stream channel stability, elevation – being the key drivers in shaping macroinvertebrate distribution patterns in the analysed mountain rivers. While significant differences in macroinvertebrate community structures were found among substrates, the influence of stream/river type conditions was particularly evident. Apart from ranking environmental variables worth including in a long-term aquatic biodiversity monitoring program in mountain areas, our study provides a baseline for practical applications. For instance, depending on the desired outcome of habitat heterogeneity restoration, it can suggest the optimal scale (landscape vs. reach vs. patch) for prioritizing in-field interventions.
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