Cupressaceae Research Articles (Page 1)

Dendroseismological investigation of redwood trees along the North Coast section of the San Andreas Fault

No Abstract.

Chung's equations-X, -XII, and -XII were applied to evaluate the fire risk index (FRI) and fire risk rating (FRR) of five wood species. The test specimens used were ginkgo tree, dawn redwood tree, toona tree, lime tree, and walnut tree. A cone calorimeter (ISO 5660-1) was selected and used to test the combustion characteristics of the specimens. The fire performance index-X (FPI-X) and fire growth index-X (FGI-X) calculated using Chung’s equations ranged from 560.59 to 2689.89 s<sup>2</sup>/kW and from 0.0005 to 0.0016 kW/s<sup>2</sup>, respectively. Furthermore, the FPI-XI and FGI-XI varied from 0.49 to 2.35 and from 1.67 to 5.33, respectively. FRI-XII, a FRR, showed that the fire risks of dawn redwood tree and ginkgo tree, at 10.88 (FRR: F) and 10.25 (FRR: F), respectively, were very high. In conclusion, a high FRI-XII value indicates that FPI-X and FPI-XI are low whereas FGI-X and FGI-XI are high.

Abstract. In the last two decades, Light detection and ranging (LiDAR) has been widely employed in forestry applications. Individual tree segmentation is essential to forest management because it is a prerequisite to tree reconstruction and biomass estimation. This paper introduces a general framework to extract individual trees from the LiDAR point cloud based on a graph link prediction problem. First, an undirected graph is generated from the point cloud based on K-nearest neighbors (KNN). Then, this graph is used to train a convolutional autoencoder that extracts the node embeddings to reconstruct the graph. Finally, the individual trees are defined by the separate sets of connected nodes of the reconstructed graph. A key advantage of the proposed method is that no further knowledge about tree or forest structure is required. Seven sample plots from a plantation forest with poplar and dawn redwood species have been employed in the experiments. Though the precision of the experimental results is up to 95 % for poplar species and 92 % for dawn redwood trees, the method still requires more investigations on natural forest types with mixed tree species.

IntroductionPlantation forest is an important component of global forest resources. The accurate estimation of tree aboveground biomass (AGB) in plantation forest is of great significance for evaluating the carbon sequestration capacity. In recent years, UAV-borne LiDAR has been increasingly applied to forest survey, but the traditional allometric model for AGB estimation cannot be directly used without the diameter at breast height (DBH) of individual trees. Therefore, it is practicable to construct a novel allometric model incorporating the crown structure parameters, which can be precisely extracted from UAV LiDAR data. Additionally, the reduction effect of adjacent trees on crown area (Ac) should be taken into account.MethodsIn this study, we proposed an allometric model depending on the predictor variables of Ac and trunk height (H). The UAV-borne LiDAR was utilized to scan the sample plot of dawn redwood (DR) trees in the test site. The raw point cloud was first normalized and segmented into individual trees, whose Acs and Hs were sequentially extracted. To mitigate the effects of adjacent trees, the initial Acs were corrected to refer to the potential maximum Acs under undisturbed growth conditions. Finally, the corrected Acs (Acc) and Hs were input into the constructed allometric model to achieve the AGBs of DR trees.Results and discussionAccording to accuracy assessment, coefficient of determination (R2) and root mean square error (RMSE) of extracted Hs were 0.9688 and 0.51 m; R2 and RMSE of calculated AGBs were 0.9432 and 10.91 kg. The unrestricted growth parts of the tree crowns at the edge of a plantation forest could be used to derive the potential maximum Ac. Compared with the allometric models for AGB estimation relying only on trunk H or on initial Ac and H, the novel allometric model demonstrated superior performance in estimating the AGBs of trees in a plantation forest.

Redwood trees (Sequoioideae), including Metasequoia glyptostroboides (dawn redwood), Sequoiadendron giganteum (giant sequoia), and Sequoia sempervirens (coast redwood), are threatened and widely recognized iconic tree species. Genomic resources for redwood trees could provide clues to their evolutionary relationships. Here, we report the 8-Gb reference genome of M. glyptostroboides and a comparative analysis with two related species. More than 62% of the M. glyptostroboides genome is composed of repetitive sequences. Clade-specific bursts of long terminal repeat retrotransposons may have contributed to genomic differentiation in the three species. The chromosomal synteny between M. glyptostroboides and S. giganteum is extremely high, whereas there has been significant chromosome reorganization in S. sempervirens. Phylogenetic analysis of marker genes indicates that S. sempervirens is an autopolyploid, and more than 48% of the gene trees are incongruent with the species tree. Results of multiple analyses suggest that incomplete lineage sorting (ILS) rather than hybridization explains the inconsistent phylogeny, indicating that genetic variation among redwoods may be due to random retention of polymorphisms in ancestral populations. Functional analysis of ortholog groups indicates that gene families of ion channels, tannin biosynthesis enzymes, and transcription factors for meristem maintenance have expanded in S. giganteum and S. sempervirens, which is consistent with their extreme height. As a wetland-tolerant species, M. glyptostroboides shows a transcriptional response to flooding stress that is conserved with that of analyzed angiosperm species. Our study offers insights into redwood evolution and adaptation and provides genomic resources to aid in their conservation and management.

Genome re-arrangements such as chromosomal inversions are often involved in adaptation. As such, they experience natural selection, which can erode genetic variation. Thus, whether and how inversions can remain polymorphic for extended periods of time remains debated. Here we combine genomics, experiments, and evolutionary modeling to elucidate the processes maintaining an inversion polymorphism associated with the use of a challenging host plant (Redwood trees) in Timema stick insects. We show that the inversion is maintained by a combination of processes, finding roles for life-history trade-offs, heterozygote advantage, local adaptation to different hosts, and gene flow. We use models to show how such multi-layered regimes of balancing selection and gene flow provide resilience to help buffer populations against the loss of genetic variation, maintaining the potential for future evolution. We further show that the inversion polymorphism has persisted for millions of years and is not a result of recent introgression. We thus find that rather than being a nuisance, the complex interplay of evolutionary processes provides a mechanism for the long-term maintenance of genetic variation.

Wandering salamanders (Aneides vagrans), known to occupy the crowns of old growth coast redwood trees, have recently been found to decelerate and engage in controlled, nonvertical descent while falling. Closely related, nonarboreal species with seemingly minor morphological differences exhibit far less behavioral control while falling; however, the influence of salamander morphology on aerodynamics remains to be tested. Here, we examine differences in morphology and aerodynamics of two salamander species, A. vagrans and the nonarboreal ensatina salamander (Ensatina eschscholtzii), using a combination of traditional and contemporary techniques. Specifically, we compare morphometrics statistically, then use computational fluid dynamics (CFD) to characterize predicted airflow and pressure over digitally reconstructed models of the salamanders. While similar in body and tail lengths, A. vagrans are more dorsoventrally flattened with longer limbs and greater surface area of the foot relative to body size than the nonarboreal E. eschscholtzii. CFD results show dorsoventral pressure gradients differ between the two digitally reconstructed salamanders resulting in lift coefficients of approximately 0.02 and 0.00, and lift:drag ratios of approximately 0.40 and 0.00 for A. vagrans and E. eschscholtzii, respectively. We conclude that the morphology of A. vagrans is better suited for controlled descent than that of the closely related E. eschscholtzii and highlight the importance of subtle morphological features, such as dorsoventral flatness, foot size, and limb length, for aerial control. That our simulation reports align with real-world performance data underscores the benefits of CFD for studying the link between morphology and aerodynamics in other taxa.

Forest restoration thinning has the potential to enhance the structural complexity and accelerate the development of large trees important to wildlife, aesthetics, and wildfire resistance. These are key objectives for the restoration of even-aged secondary forests within Redwood National Park in Humboldt County, CA, USA. We evaluated the tree growth and stand structure 10 years after two thinning methods were applied at two intensities in a 40-year-old mixed redwood ( Sequoia sempervirens (Lamb. ex D. Don) Endl.)/Douglas-fir ( Pseudotsuga menziesii (Mirb.) Franco var. menziesii) stand. Heavy thinning enhanced the diameter growth of redwood and Douglas-fir trees more than light thinning. Crown thinning generally enhanced the structural diversity more than low thinning, and structural diversity increased progressively over the 10 years following thinning. Understory plant richness fluctuated between measurement years. Heavy thinning enhanced the understory shrub cover. The fastest-growing trees in heavily thinned stands were much more likely to sustain bear damage, especially redwood trees. Overall, different thinning methods and intensities induced a different suite of outcomes, yet none restored redwood dominance, but all treatments enhanced some other ecosystem values important for old-growth restoration such as large overstory trees, understory plant and shrubs, and elements of structural complexity, including tree-size variability, snags, down logs, and trees exhibiting stem or top damage.

Conservation biology, and the descendent discipline conservation paleobiology, are philosophically aligned with the mission of the National Park Service (NPS), including near time and deep time frameworks. As defined in the Organic Act of August 25, 1916, the purpose and mission of the NPS is “…to conserve the scenery and the natural and historic objects and the wild life therein and to provide for the enjoyment of the same in such manner and by such means as will leave them unimpaired for the enjoyment of future generations”. This conservation mandate is broadly inclusive of grizzly bears, redwood trees, and dinosaur bones equally, throughout the 424 officially designated parks, monuments, and other areas managed by the NPS. Although conservation paleobiology is reported by some to be a new and integrated field of study, there are remarkable similarities to traditional and old school perspectives which embraced natural history more holistically during the nineteenth and early twentieth centuries. Notably, the written contributions by Charles Darwin, Aldo Leopold, and Edward Abbey synthesize observations at the global and landscape scales, promoting conservation advocacy of the natural world, past and present. U.S. National Park Service areas preserve some of Planet Earth’s most globally significant natural resources, ecological systems, and biosphere reserves. Discoveries of fossil condors and mummified bats within caves of Grand Canyon National Park, the co-occurrence of human and megafaunal footprints preserved in Late Pleistocene strata at White Sands National Park, and pygmy mammoth remains on Channel Islands National Park, collectively demonstrate how valuable temporal and historical biological perspectives contribute to science, stewardship, and resources management in parks and beyond. The paleobiology community is cordially invited to join in the holistic study and conservation of the near time and deep time resources in the national parks.

Predicting timber theft based on environmental features – Insights from Humboldt Redwoods State Park, US

The loss of roosting resources, either through disturbance or removal, negatively affects bats. Identifying sensitive species and determining roost requirements are critical components in conserving their habitat. Cavity-roosting bats on the North Coast of California are known to use hollows in large redwood trees. In this study, we examined the factors determining the use of basal tree hollows by different bat species at eight redwood forest sites in Del Norte, Humboldt, and Mendocino Counties, California. Bat guano was collected from 179 basal hollow roosts from 2017 to 2018, and guano mass was used as an index of roosting activity. Nine bat species and one species group were identified by analysis of DNA in guano. We made a total of 253 identifications from 83 hollows into the 10 species categories. The most prevalent species were Myotis californicus (California myotis; 28.5% of all identifications), the Myotis evotis-Myotis thysanodes group (17.4%), Corynorhinus townsendii (17.0%), and Myotis volans (15.0%). We evaluated the extent to which habitat variables at the scales of the hollow, vicinity, and site influenced the level of roost use. The correlations between guano mass and habitat variables were examined using generalized additive mixed models. At the hollow scale, guano mass increased with ceiling height above the opening. At the vicinity scale, guano mass increased with less cover of small trees. At the site scale, there was no association between guano mass and distance to foraging areas, elevation, or the number of nearby hollows. These tree hollow roost preferences can inform land managers when planning the management and conservation of redwood forests.

Tracheid buckling may protect leaves in the dynamic environments of forest canopies, where rapid intensifications of evaporative demand, such as those brought on by changes in light availability, can result in sudden increases in transpiration rate. While treetop leaves function in reliably direct light, leaves below the upper crown must tolerate rapid, thermally driven increases in evaporative demand. Using synchrotron-based X-ray microtomography, we visualized impacts of experimentally induced water stress and subsequent fogging on living cells in redwood leaves, adding ecological and functional context through crown-wide explorations of variation in leaf physiology and microclimate. Under drought, leaf transfusion tracheids buckle, releasing water that supplies sufficient temporal reserves for leaves to reduce stomatal conductance safely while stopping the further rise of tension. Tracheid buckling fraction decreases with height and is closely coordinated with transfusion tissue capacity and stomatal conductance to provide temporal reserves optimized for local variation in microclimate. Foliar water uptake fully restores collapsed and air-filled transfusion tracheids in leaves on excised shoots, suggesting that trees may use aerial water sources for recovery. In the intensely variable deep-crown environment, foliar water uptake can allow for repetitive cycles of tracheid buckling and unbuckling, protecting the tree from damaging levels of hydraulic tension and supporting leaf survival.

Voyage of Ben Cao, Part II: Development of Chinese Medicinal Specimens in the British Museum

Disjoining pressure driven transpiration of water in a simulated tree

Estimating aboveground biomass of urban forest trees with dual-source UAV acquired point clouds

The central revelation in Harris’s work is that language is a product of language makers. I deliberately refer to this as a revelation because this is not something that one can discover by analyzing sound or text, nor by counting speech events, etc. Writers on language have for centuries taken language to be an object that one finds ‘out there’ and that one may examine as one examines rocks, trees, etc. What Harris realized was that language is natural in exactly the same way as are marriages, laws, art, savings banks, trade unions, road kill and watches; language is NOT natural in the same way as sunshine, rain, tornadoes, volcanic eruptions, redwood trees and baby sharks. That is to say that language is a product of human activity and can only be understood from that perspective, while granting that human beings are but one among the many creatures that together make up what we call nature.

The Shoemaker and the Gibson Girl

In every introductory biology class, students learn the classification system used to catalogue plants, animals, fungi, and other organisms. In order of increasing specificity, the major levels of classification are: domain, kingdom, phylum, class, order, family, genus, and species. Global adoption of this system allows us to create an inventory of the world’s species diversity. For instance, we classify the Redwood tree of the US Pacific coast as the species sempervirens in the genus Sequoia, or Sequoia sempervirens. Until recently, however, there was no comparable standard available in the United States to classify the nation’s diverse types of vegetation – the various combinations of species, growth forms, and ecological factors that occur in certain regions. Instead, many land-management groups created their own classifications, hindering communication and collaboration. To address this issue, stakeholders established the United States National Vegetation Classification (USNVC).

Abstract Salamanders are often used as a model of early tetrapod locomotion, due to their generalized tetrapod body plan. We imaged five individuals of wandering salamander, Aneides vagrans, during horizontal and vertical locomotion and compared kinematic and gait adjustments made to compensate for each condition. We used ImageJ to calculate duty factor, stride length, stride frequency, contralateral foot spread, heading of climbing, and forward velocity. Like other terrestrial salamanders, A. vagrans use a diagonal couplet, lateral sequence walk on horizontal surfaces. When walking vertically, however, they use a single‐foot gait, taking smaller steps and extending the duty factor compared with level walking. Salamanders adjusted their limbs to have a wider contralateral foot spread between fore‐ and hindfeet when walking downward as compared to walking upward or horizontally. These gait adjustments may minimize the risk of slipping or falling by increasing the number of contact points during the stride cycle, and by bringing their center of mass closer to the surface. We found that salamanders moved at a significantly faster velocity when traveling horizontally compared to vertically. Furthermore, we found no significant difference between upward and downward velocity, despite greater stride lengths in upward locomotion; this was explained by a higher stride frequency in downward locomotion. We estimate travel time up or down an old‐growth redwood tree to be on the scale of hours, a significant time investment that may encourage alternatives when available. These results suggest that, in an ecological context, while salamanders are capable of traveling straight down a redwood tree, they may simply tend to jump.