Original Cultivar Research Articles

Establishment of an Efficient In Vitro Propagation Protocol for Cannabis sativa L. subsp. ruderalis Janish

Cannabis sativa L., subsp. ruderalis Janish., ‘Finola’ is a dioecious cultivar of Finnish origin. This cultivar is very interesting because its cultivation cycle lasts less than 3 months. The aim of this study was to define an efficient micropropagation protocol to ensure in vitro multiplication and rooting and in vivo acclimatization. Two different explant sources were tested: seed-derived in vitro explants and nodal segments containing axillary buds from selected mother plants. Shoot proliferation was tested on different growth media enriched with cytokinin alone or cytokinin in combination with auxins. Among all combinations, the best results were obtained by combining the Basal Medium (BM—a Murashige and Skoog modified medium) with sucrose (20 g L−1), thidiazuron (TDZ 0.4 mg L−1), and 1-naphthalenacetic acid (NAA 0.2 mg L−1). Regarding rooting induction, the plants developed an extensive root system under red/blue lights on BM enriched with sucrose (30 g L−1) and indol-3 butyric acid (0.1 mg L−1), which allowed the survival of more than 90 percent of the plantlets once transplanted into the climate-controlled greenhouse.

Origin of purple asparagus cultivar 'Pacific Purple' based on the sequence of sex determination gene.

Garden asparagus is one of the most important crops worldwide. Since this crop is dioecious and male plants generally have higher yields compared to female plants, several DNA markers for sex identification have been developed for acceleration of asparagus breeding. Among these markers, Asp1-T7sp and MSSTS710 were found to be effective in sex determination for many asparagus cultivars. However, we previously found that these markers were not completely suitable for sex identification in the purple asparagus cultivar 'Pacific Purple'. There are two types of male individuals in this cultivar: One type is PP-m, which is identified the sex type by Asp1-T7sp and MSSTS710 markers, while the other type is PP-m* whose sex type is not identified by these markers. Since the sex identification markers are located on the non-recombining Y region, it was expected that the sequence around this region might be different between PP-m and PP-m*. In this study, the sequence of one of the sex-determining genes, MSE1/AoMYB35/AspTDF1, was analyzed, and a comparative analysis was conducted among PP-m and PP-m* of 'Pacific Purple', A. officinalis and related species A. maritimus. The results revealed that PP-m and PP-m* has the similar sequence of MSE1/AoMYB35/AspTDF1 gene from A. officinalis and A. maritimus, respectively. 'Pacific Purple' is a cultivar developed through polycross hybrid from Italian landrace 'Violetto d'Albenga' (VA), suggesting that VA originated from an interspecific crossing between A. officinalis and A. maritimus and that the pollen parent used in 'Pacific Purple' breeding contained two types of male individuals with different MSE1/AoMYB35/AspTDF1 sequence. As a result, PP-m and PP-m* of 'Pacific Purple' harbors the similar sequences of the MSE1/AoMYB35/AspTDF1 gene from A. officinalis and A. maritimus, respectively.

Italian Ryegrass as a Forage Crop for the Baltics: Opportunities and Challenges in Light of Climate Change.

Grasslands are important for sustainable milk and meat production as well as for providing other ecosystem services. One of the most productive components of short-term grasslands is Italian ryegrass (Lolium multiflorum subsp. italicum Lam.), offering high yield, excellent feed value, and high palatability to animals but low tolerance to abiotic stress. Global climate warming opens new opportunities and could be beneficial in increasing the potential of biomass production. In this study, we aimed to assess an Italian ryegrass cultivar of Lithuanian origin, 'Ugnė', for productivity and yield stability, with special emphasis on their relationship with climatic factors over a period of 14 years. The average winter temperatures and total spring precipitation explained 51% of the first-cut dry matter yield (DMY) variance. Second- and third-cut DMYs were associated with average temperature only. Italian ryegrass cv. 'Ugnė' demonstrated the potential to produce high dry matter yields after warm winters and withstand summer drought spells under Lithuanian conditions. However, mid-to-late-summer heat waves might reduce productivity and should be taken into consideration when breeding new Italian ryegrass cultivars.

Genetic Variation and Association Analysis of Phenolic Compounds in Rapeseed (Brassica napus L.) Mutant Lines Using Genotyping-by-Sequencing (GBS)

The concentration of phenolic compounds in rapeseed is important because they are either anti-nutritional compounds or directly related to antioxidant activity. In this study, single nucleotide polymorphisms (SNPs) were identified using genotyping-by-sequencing (GBS), and an association study was conducted to investigate phenolic content in 95 rapeseed mutant lines derived from gamma rays and their original cultivar. A total of 3,196,318 SNPs were detected, resulting in the identification of a set of 70,208 union SNPs used to perform association studies. Seven compounds were identified, sinapine being the major phenolic compound (91.2–99.2%) in all genotypes. An association study was conducted for seven compounds and total phenolic content (TPC). It identified 241 SNPs that were significantly associated with these compounds, total sinapine content (TSC), and TPC. Based on the SNP markers detected, BnaC02g20420D was associated with dihexose, BnaC08g30570D with progoitrin, BnaA01g06890D with methyl sinapate, BnaA09g16810D with sinapine(4-O-8′)guaiacyl, BnaCnng39930D with trans-sinapine 1, BnaA07g31720D with trans-sinapine 2, BnaC03g31950D with sinapoyl malate, and BnaAnng27700D with TPC. These were selected as candidate genes that may play a key role in rapeseed. The SNP markers associated with these key phenolic compounds can be used as targets in breeding programs to reduce anti-nutritional components.

Biomorphological characteristics of natural forms of Malus sieversii in cenopopulations of the Dzungarian Alatau (Republic of Kazakhstan)

Biomorphological characteristics of natural forms of Malus sieversii in cenopopulations of the Dzungarian Alatau (Republic of Kazakhstan)

Genetic diversity of bread wheat (Triticum aestivum L.) in the allelic composition of HMW-GS (a review)

Background. The qualitative composition of wheat grain varies depending on the cultivar, soil and climate conditions, and agricultural practices. The allelic composition of glutenins in bread wheat cultivars is an important parameter for the analysis and management of their genetic structure. In this respect, there is an interest in studying the genetic diversity of alleles of high-molecular-weight glutenin subunits (HMW-GS) in bread wheat cultivars from Europe, Asia, Africa, and America.Materials and methods. The total diversity of alleles in Glu-1 glutenin loci was evaluated according to the calculation of the Nei index (H). Using this indicator and the cluster analysis, wheat cultivars of various ecogeographic origin were distributed into relatively homogeneous groups.Results. Wheat cultivars from Poland, Germany, France, Spain, Portugal, Turkey, Iran, Pakistan, India, China, and Algeria (Group I) had the average Nei index of 0.59, and those from the U.S., Mexico, Argentina, Russia, Kazakhstan, Ethiopia, Czech Republic, Hungary, Bulgaria, Afghanistan, and North Korea (Group II) had 0.42. These groups of wheat cultivars differed in the frequency of occurrence of glutenin subunits at each Glu-1 locus: N, 7+9, 2+12 in Group I, and 2*, 7+9, 5+10 in Group II.Conclusion. Wheat cultivars from Group II had on average a low level of variability of allelic genes in the respective loci, manifesting high grain quality of these cultivars and the highest probability of their genetic depletion compared to the cultivars from Group I, where most of the cultivars are described by a combination of low-quality glutenin subunits.

Exploring the Root Morphological Traits of Diverse-Origin Cultivated Soybean

Root morphological traits (RMTs) profoundly influence plant growth, resilience to abiotic stresses, and yield in soybean (Glycine max). In a comprehensive study spanning two consecutive years (2021–2022), the RMTs were assessed in 216 soybean accessions from 34 diverse origins. The investigation involved randomized batches with plants cultivated in PVC pipes filled with horticultural soil and harvested at the V2 growth stage. All the germplasms exhibited significant differences (p < 0.001) in all measured traits, i.e., total root length (TRL), root volume (RV), average diameter (AD), number of tips (NT), number of forks (NF), and tertiary total length (TTL). Among the top 5% performers in TRL, which, interestingly, were exclusively of Korean origin, germplasm IT115491 displayed an impressive average TRL value of 1426.24 cm. Notably, germplasms from Serbia and Korea predominantly occupied the upper AD quantile, with IT156262 exhibiting the highest AD value of 0.57 mm. A correlation analysis showed strong positive associations of TRL with RV (r = 0.85), NT (r = 0.84), NF (r = 0.96), and TTL (r = 0.88), whereas it had a negative association with AD (r = −0.25). A principal component analysis (PCA) showed a cumulative 95% of the total variance in the data in the first three principal components (PCs). PC1 (eigenvalue = 4.64) accounted for a 77.00% variance, with TRL, RV, NF, NT, and TTL exhibiting the highest associated eigenvectors. K-means clustering was performed with three clusters. Cluster 2 contained accessions with higher AD values, whereas Cluster 3 comprised accessions with increased TRL, NT, NF, and TTL, which mostly originated from Korea. Our findings offer targeted insights for plant breeders to optimize specific root traits and enhance crop performance across diverse environmental conditions by strategically targeting these clusters. Additionally, the influence of cultivar origin on root traits warrants further investigation, with implications for future breeding programs.

Genealogical tracing of Olea europaea species and pedigree relationships of var. europaea using chloroplast and nuclear markers

BackgroundOlive is one of the most cultivated species in the Mediterranean Basin and beyond. Despite being extensively studied for its commercial relevance, the origin of cultivated olive and the history of its domestication remain open questions. Here, we present a genealogical and kinship relationships analysis by mean of chloroplast and nuclear markers of different genera, subgenus, species, subspecies, ecotypes, cultivated, ancient and wild types, which constitutes one of the most inclusive research to date on the diversity within Olea europaea species. A complete survey of the variability across the nuclear and plastid genomes of different genotypes was studied through single nucleotide polymorphisms, indels (insertions and deletions), and length variation.ResultsFifty-six different chlorotypes were identified among the Oleaceae family including Olea europaea, other species and genera. The chloroplast genome evolution, within Olea europaea subspecies, probably started from subsp. cuspidata, which likely represents the ancestor of all the other subspecies and therefore of wild types and cultivars. Our study allows us to hypothesize that, inside the subspecies europaea containing cultivars and the wild types, the ancestral selection from var. sylvestris occurred both in the eastern side of the Mediterranean and in the central-western part of Basin. Moreover, it was elucidated the origin of several cultivars, which depends on the introduction of eastern cultivars, belonging to the lineage E1, followed by crossing and replacement of the autochthonous olive germplasm of central-western Mediterranean Basin. In fact, our study highlighted that two main ‘founders’ gave the origin to more than 60% of analyzed olive cultivars. Other secondary founders, which strongly contributed to give origin to the actual olive cultivar diversity, were already detected.ConclusionsThe application of comparative genomics not only paves the way for a better understanding of the phylogenetic relationships within the Olea europaea species but also provides original insights into other elusive evolutionary processes, such as chloroplast inheritance and parentage inside olive cultivars, opening new scenarios for further research such as the association studies and breeding programs.

Environmental and geographical conditions influence color, physical properties, and physiochemical composition of pomegranate fruits

The highest quality pomegranate necessitates a tropical or subtropical environment for proper growth and development. This study evaluated two pomegranate cultivars including Rabab Poost Ghermez Neyriz (RPGN) and Makhmal Malas Shahreza (MMS) for physical traits, biochemical properties, and juice quality in their native locations as well as other warm and arid regions during two growing seasons (2019–2020 and 2020–2021) in Iran. The results showed that cultivars with the maximum redness (a*) were more likely to originate in cooler climates, and the cultivar’s responses to changing climates were also different. According to pomegranate characteristics, cultivars in different regions had different fruit, aril, and skin weights. According to these findings, pomegranate fruits cultivated in other climates than the origin climate have a smaller edible fraction. The findings also demonstrate that pomegranate fruits cultivated in mountain climates have more significant biochemical parameters such as total phenol, anthocyanin content, antioxidant capacity, and vitamin C than those produced in desert environment settings. The increased titratable acidity (TA), total soluble solids (TSS), and pH values of pomegranates produced in origin climate than the warm environment; thus, suggest that changes in pomegranate cultivar origin had a clear impact on fruit juice quality. Environmental factors, such as wind speed, altitude, and annual precipitation, had a significant correlation with a* skin, TSS, fruit weight, aril weight, edible portion, pH, TA, phenol, antioxidants, and anthocyanin content.

Dissecting the genetic basis of drought responses in common bean using natural variation.

The common bean (Phaseolus vulgaris L) is the most important legume for human consumption, contributing 30% of the total daily protein intake in developing countries. A major limitation for its cultivation is drought, which causes more than 60% of the annual losses. Among physiological adaptations to drought, delaying senescence and extending the photosynthetic capacity can improve crop productivity. This strategy is known as functional "stay-green" (SG) and has been discussed as a goal in plant breeding to alleviate the loss of yield under water scarcity conditions. The genetic components behind SG traits have been explored specially in cereals, but they are to date poorly studied in the common bean. For this, we screened 71 common bean cultivars belonging to the three most important gene-pools, Mesoamerica, Andes and Europe, selected to cover the natural variation of the species. Phenotyping experiments under terminal drought during long-days in greenhouse conditions, identified six photoperiod insensitive cultivars of European origin with a clear SG phenotype. Using SNP data produced from whole genome re-sequencing data, we obtained 10 variants significantly associated to the SG phenotype on chromosomes 1, 3, 7, 8, 9 and 10 that are in close proximity to gene models with functional annotations related to hormone signaling and anti-oxidant production. Calculating pairwise FST between subgroups of cultivars divided according to their drought response (susceptibility, escape, recovery or SG), we identified up to 29 genomic windows accounting for 1,45Mb that differentiate SG cultivars; these signals were especially strong on chromosomes 1, 5 and 10. Within these windows, we found genes directly involved in photosynthetic processes and trehalose synthesis. Altogether, these signals represent good targets for further characterization and highlight the multigenic nature of the SG response in legumes.

Alleles at the Gli-A3 locus in groups of ukrainian winter common wheat cultivars of different origin

Aim. The aim of the study was to analyze the diversity and frequencies of alleles at the minor gliadin locus Gli-A3 in groups of common winter wheat cultivars developed in different breeding institutions of Ukraine in different periods of time. Methods. Acid polyacrylamide gel electrophoresis of gliadins was carried out. To identify the Gli-A3 allele of the cultivar Myronivska storichna, segregation in a sample of F2 seeds from crossing with the cultivar Bezosta 1 was analyzed. Results. Alleles at Gli-A3 were identified in 511 Ukrainian cultivars. In addition to the alleles a-d, a new allele Gli-A3e encoding two omega-gliadins was identified in Myronivska storichna. The alleles a and b predominate in the total group of cultivars. Differences in the allele composition and frequencies were revealed between some groups of cultivars. A significant reduction in the frequency of Gli-A3b was detected for the groups of the Plant Breeding and Genetics Institute (PBGI) and the V. Ya. Yuryev Plant Production Institute (IPP) cultivars released after 2010. Conclusions. The frequencies of the predominant alleles a and b are similar in the groups of the Central Forest-Steppe cultivars in different periods of breeding. An increase in the frequency of the allele a was noted for the groups of PBGI (the Steppe) and IPP (the Eastern Forest-Steppe) cultivars, which may indicate its adaptive value under conditions of an increase in the average annual temperature in these zones.

The Self-incompatibility Locus and Chloroplast DNA Regions of Prunus domestica Reflect the Origin and Genetic Diversity of Traditional Cultivars

A traditional cultivar, Besztercei Bt.2, and a clone of an autochthonous landrace (Nemtudom P3) of the hexaploid European plum (Prunus domestica) were studied to highlight their breeding perspectives. Five self-incompatibility ribonuclease (S-RNase) alleles were detected in both cultivars, with one allele shared. DNA sequence analysis confirmed it as a new, previously unidentified allele in P. domestica, which we labeled as S18. This allele was found to share ∼99% identity with the Prunus spinosa SB-RNase allele. Because Prunus species are readily hybridizing, sequence variations in 10 chloroplast DNA regions and nuclear internal transcribed spacers were studied to check if ‘Nemtudom P3’ and ‘Besztercei Bt.2’ are indeed P. domestica. The majority-rule consensus tree of maximum likelihood and Bayesian inferences confirmed it, and also indicated genetic differentiation with ‘Nemtudom P3’ and ‘Besztercei Bt.2’ forming a statistically supported subclade within the P. domestica germplasm. Our results pointed to some regions of the P. domestica chloroplast genome (trnS-trnG-trnG, trnC-ycf6, and trnD-trnT) that can be used to detect intraspecific variations. The proportion of parsimony informative characters compared with the total length of amplified regions was the highest in the case of nrITS with 12.1%. The S-genotyping of 68 wild-growing Nemtudom trees showed the genetic consequences of long-term vegetative propagation and occasional crossing between Besztercei and Nemtudom accessions. Controlled pollinations confirmed the self-compatibility of ‘Nemtudom P3’. By clarifying their phylogenetic position, and characterizing the S-locus, our results will help breeding P. domestica cultivars and pave the way to understanding how the S-locus works in a hexaploid Prunus species.

Antioxidant compounds and activities of Perilla frutescens var. crispa and its processed products.

Perilla frutescens var. crispa 'Antisperill' has stronger anti-inflammatory effects than the original cultivar (red perilla), but studies on its bioactive compounds are limited. This study aimed to evaluate the antioxidant compounds and activity of red perilla and 'Antisperill', as well as their processed products using freeze drying (FD) and microwave-assisted low temperature vacuum drying (MVD). Red perilla had higher antioxidant compounds and activities than 'Antisperill'. MVD showed significantly greater antioxidant properties than FD among the processed products. Isoegomaketone, studied for its anti-obesity, antioxidant, anti-inflammatory, and anticancer properties, was only found in 'Antisperill' and its processed products, with the highest content in 'Antisperill' MVD samples. This study highlights that 'Antisperill' contains various antioxidants, and MVD is the optimal drying method to preserve and enhance its antioxidant content. As a result, 'Antisperill' could potentially serve as a natural antioxidant with both anti-inflammatory and antioxidant functions.

Characterization of the genetic composition and establishment of a core collection for the INERA Robusta coffee (Coffea canephora) field genebank from the Democratic Republic of Congo

Cultivation of Robusta coffee is likely to gain importance because of its high disease resistance and climate envelope. Robusta coffee genetic resources conserved in field genebanks can play an important role to further improve its cupping quality and other agronomic traits, but such Coffea canephora collections are limited and still poorly characterized. In this study, we characterized the genetic composition of the historically important but until recently neglected INERA Coffee Collection in Yangambi (the Democratic Republic of Congo). We used GBS to discover genome-wide genetic diversity, created and validated a novel multiplex amplicon sequencing (HiPlex) screening assay to genetically screen 730 coffee shrubs of the Yangambi Coffee Collection, grouped clonal material and delineated 263 accessions with unique genetic fingerprints. Comparison to reference material of three genetic origins revealed that the majority of the Yangambi accessions were assigned a ‘Lula’ cultivar origin, four accessions were assigned to Congolese subgroup A and nine accessions were most closely related to local wild accessions. About one-quarter of the accessions was likely derived from hybridization between these groups, which could result from seed-based propagation of the collection, breeding efforts, or natural cross-pollination. Parental analyses discovered eight preferentially used accessions, which may correspond to historically selected founders, or direct descendants thereof, whose seed material was once widely used to establish coffee plantations. Finally, two core collections were proposed using the maximization strategy (CC-I; 100 accessions) and genetic distance method (CC-X; 10 accessions). Our study demonstrates a method for the genetic characterization of Robusta coffee collections in general and contributes to the re-evaluation and exploration of the Robusta coffee genetic resources in the Democratic Republic of the Congo in particular.

Pathogenicity and quantitative resistance in Mediterranean durum and bread wheat cultivars of Syrian origin towards Fusarium head blight agents under controlled conditions

Pathogenicity and quantitative resistance in Mediterranean durum and bread wheat cultivars of Syrian origin towards Fusarium head blight agents under controlled conditions

Genetic diversity of the breeding collection of tomato varieties in Kazakhstan assessed using SSR, SCAR and CAPS markers.

Tomato is one of the most prominent crops in global horticulture and an important vegetable crop in Kazakhstan. The lack of data on the genetic background of local varieties limits the development of tomato breeding in the country. This study aimed to perform an initial evaluation of the breeding collection of tomato varieties from the point of view of their genetic structure and pathogen resistance using a set of PCR based molecular markers, including 13 SSR markers for genetic structure analysis, and 14 SCAR and CAPS markers associated with resistance to five pathogens: three viruses, fungus Fusarium oxysporum, and oomycete P hytophthora infestans. Nine SSR markers were with a PIC value varying from 0.0562 (low information content) to 0.629 (high information content). A weak genetic structure was revealed in the samples of varieties including local cultivars and, predominantly, varieties from Russia and other ex-USSR countries. The local varieties were closely related to several groups of cultivars of Russian origin. Screening for a set of resistance markers revealed the common occurrence of the resistance locus I against Fusarium oxysporum and only the occasional presence of resistance alleles of other markers. No markers of resistance to the three considered viruses were revealed in local tomato varieties. Only two local cultivars had markers of resistance to P. infestans, and only the 'Meruert' cultivar had a combination of resistance markers against P. infestans and F. oxysporum. The obtained results have demonstrated the need for further studies of local tomato varieties with a wider range of molecular markers and source germplasm to lay a foundation for the development of tomato breeding in Kazakhstan.

Genetic Diversity of Common Olive (Olea europaea L.) Cultivars from Nikita Botanical Gardens Collection Revealed Using RAD-Seq Method.

In different countries, interest in the commercial cultivation of the olive has recently greatly increased, which has led to the expansion of its range. The Crimean Peninsula is the northern limit of the common olive (Olea europaea L.) range. A unique collection of common olive's cultivars and hybrids has been collected in the Nikitsky Botanical Gardens (NBG). The aim of this study was to assess the genetic diversity of 151 samples (total of several biological replicates of 46 olive cultivars including 29 introduced and 11 indigenous genotypes) using the ddRAD sequencing method. Structural analysis showed that the studied samples are divided into ten groups, each of which mainly includes cultivars of the same origin. Cultivars introduced to the Crimean Peninsula from different regions formed separate groups, while local cultivars joined different groups depending on their origin. Cultivars of Crimean origin contain admixtures of mainly Italian and Caucasian cultivars' genotypes. Our study showed that the significant number of Crimean cultivars contains an admixture of the Italian cultivar "Coreggiolo". Genetic analysis confirmed the synonymy for the cv. "Otur" and "Nikitskaya 2", but not for the other four putative synonyms. Our results revealed the genetic diversity of the olive collection of NBG and provided references for future research studies, especially in selection studies for breeding programs.

A high-quality Bougainvillea genome provides new insights into evolutionary history and pigment biosynthetic pathways in the Caryophyllales.

Bougainvillea is a perennial ornamental shrub that is highly regarded in ornamental horticulture around the world. However, the absence of genome data limits our understanding of the pathways involved in bract coloration and breeding. Here, we report a chromosome-level assembly of the giga-genome of Bougainvillea × buttiana 'Mrs Butt', a cultivar thought to be the origin of many other Bougainvillea cultivars. The assembled genome is ~5Gb with a scaffold N50 of 151 756 278bp and contains 86 572 genes which have undergone recent whole-genome duplication. We confirmed that multiple rounds of whole-genome multiplication have occurred in the evolutionary history of the Caryophyllales, reconstructed the relationship in the Caryophyllales at whole genome level, and found discordance between species and gene trees as the result of complex introgression events. We investigated betalain and anthocyanin biosynthetic pathways and found instances of independent evolutionary innovations in the nine different Caryophyllales species. To explore the potential formation mechanism of diverse bract colors in Bougainvillea, we analyzed the genes involved in betalain and anthocyanin biosynthesis and found extremely low expression of ANS and DFR genes in all cultivars, which may limit anthocyanin biosynthesis. Our findings indicate that the expression pattern of the betalain biosynthetic pathway did not directly correlate with bract color, and a higher expression level in the betalain biosynthetic pathway is required for colored bracts. This improved understanding of the correlation between gene expression and bract color allows plant breeding outcomes to be predicted with greater certainty.

Diversity of plums belonging to P. domestica L., P. insititia L. and Prunus × rossica Erem. Tree vigour, yielding and fruit quality attributes

From 2017 to 2022, tree growth, yield components, fruit quality attributes and antioxidant capacity of autochthonous and rare plum cultivars of different genetic origin were investigated. The research was carried out in the environmental conditions of Serbia in orchard where intensive horticultural measures were applied. The results showed a wide variability of the examined parameters among cultivars and among plum types. The ‘Olenka’ plum had the most vigor trees, whereas ‘Saint Julien’ had dwarf trees. The Serbian autochthonous plums ‘Metlaš’ and ‘Crvena Ranka’ had the best yield components (Y, CY, YE). ‘Timočanka’ had the highest FW and fruit size, whereas ‘Metlaš’ and ‘Saint Julien’ had the weakest fruit physical characteristics. Unexpectedly, ‘Saint Julien’ had the highest content of soluble solids, both ripening and sweetness indexes and RS. The highest and similar content of TS was found in the fruits of ‘Crvena Ranka’, ‘Timočanka’ and ‘Obilnaya’. ‘Crvena Ranka’ and ‘Obilnaya’ had the highest content of N-RS. The Czech autochthonous cultivars ‘Durancie’ and ‘Chrudimská’ had a similar and highest content of vitamin C, while the highest TPC and TFC were found in the fruits of ‘Metlaš’ and ‘Olenka’, respectively. The highest amount of anthocyanins had ‘Obilnaya’, whereas the lowest had ‘Saint Julien’. Fruits of ‘Durancie’ had the highest TAC, followed by ‘Timočanka’ and ‘Obilnaya’, whereas fruits of ‘Olenka’ had the poorest antioxidant power. Considering their overall performances, evaluated plums can be grown in production orchards for different purposes or can be an alternative to the leading commercial cultivars in similar ecological conditions. Also, they can be used for breeding programs.

Intraspecific Chloroplast Genome Variation and Domestication Origins of Major Cultivars of Styphnolobium japonicum.

Styphnolobium japonicum is a significant resource of ornamental and medicinal plants. In this study, we employed high-throughput sequencing to assemble nine chloroplast genomes of S. japonicum. We compared and reconstructed the phylogenetic relationships of these genomes, along with three publicly available chloroplast genomes. Our results showed that the length of the 12 S. japonicum chloroplast genomes ranged from 158,613 bp to 158,837 bp, all containing 129 unique functional genes. The genetic diversity within S. japonicum chloroplast genomes was relatively low, with π = 0.00029, Theta-W = 0.00028, and an indel frequency of 0.62 indels/1 kb. Among the four regions, the SSC region exhibited the highest genetic diversity and indel frequency, while the IR region had the lowest. Non-coding regions displayed greater genetic variation compared to coding regions, with a few highly variable regions identified. The phylogenetic tree constructed revealed that the major cultivars of S. japonicum originated from two genetic 'sources. S. japonicum 'JinhuaiJ2' had an independent origin and showed close relatedness to S. japonicum var. violacea, S. japonicum var. japonicum, and S. japonicum f. oligophylla. On the other hand, other major cultivars shared a common genetic origin and were closely related to S. japonicum f. pendula. This study highlights the variability of chloroplast genomes within S. japonicum and provides insights into the genetic origins of major cultivars and their relationships with different varieties and forma.