Coral Fragments Research Articles

Persistence of phenotypic responses to short-term heat stress in the tabletop coral Acropora hyacinthus.

Widespread mapping of coral thermal resilience is essential for developing effective management strategies and requires replicable and rapid multi-location assays of heat resistance and recovery. One- or two-day short-term heat stress experiments have been previously employed to assess heat resistance, followed by single assays of bleaching condition. We tested the reliability of short-term heat stress resistance, and linked resistance and recovery assays, by monitoring the phenotypic response of fragments from 101 Acropora hyacinthus colonies located in Palau (Micronesia) to short-term heat stress. Following short-term heat stress, bleaching and mortality were recorded after 16 hours, daily for seven days, and after one and two months of recovery. To follow corals over time, we utilized a qualitative, non-destructive visual bleaching score metric that correlated with standard symbiont retention assays. The bleaching state of coral fragments 16 hours post-heat stress was highly indicative of their state over the next 7 days, suggesting that symbiont population sizes within corals may quickly stabilize post-heat stress. Bleaching 16 hours post-heat stress predicted likelihood of mortality over the subsequent 3-5 days, after which there was little additional mortality. Together, bleaching and mortality suggested that rapid assays of the phenotypic response following short-term heat stress were good metrics of the total heat treatment effect. Additionally, our data confirm geographic patterns of intraspecific variation in Palau and show that bleaching severity among colonies was highly correlated with mortality over the first week post-stress. We found high survival (98%) and visible recovery (100%) two months after heat stress among coral fragments that survived the first week post-stress. These findings help simplify rapid, widespread surveys of heat sensitivity in Acropora hyacinthus by showing that standardized short-term experiments can be confidently assayed after 16 hours, and that bleaching sensitivity may be linked to subsequent survival using experimental assessments.

Characteristics of the surface sediments surounding Ly Son island and related mineral potentials

The marine area surrounding Ly Son island, of Quang Ngai province demonstrates steep and complex sea - floor morphology due to the presence of submarine coral reefs developed above the Ly Son paleo - volcano. The data of grain - size and mineral compositon analysis show that surface sediments of the Ly Son island are subdivided into 09 different sediment groups: muddy sandy gravel, sand, gravelly sand, gravel mixed sand and gravelly muddy sand, gravelly mud mixed sand, muddy sand, silty sand, gravelly mud, whose major composition is dominated by quartz (15.0÷71.0%), shelf fragments (27.0÷81.0%), minor lithic fragments and feldspar. This indicates that surface sediments can come from multi - origins in this studied area. The distribution of those sedimentary groups is relatively complex. The northern region mainly contains coarser grained sediments (i.e., sanddy gravel, sand, etc.), while the southern region hightly apears finer grained sediments (i.e., mud and silt). The coarser grained sediments such as muddy sandy gravel and gravelly sand, which are mainly coral fragment and often concentrated in the steep terrain around the emerged islands, while finer grained sediments more like sand, silty sand, etc. mostly deposited inside the submarine incised channels and slopes. The data from heavy mineral analysis show that the main valuable placer are ilmenite, zircon, etc. but their grades are very low and hence little economic prospect (ilmenite accounts for 23.57÷23.83 g/m3; zircon accounts for 0.33÷4.53 g/m3); Minerals used as construction materials are concentrated mainly in coarse - grained sedimentary fields (sand, gravelly sand and gravel mixed sand) with economic potential to serve construction needs on Ly Son island.

Millennia-old coral holobiont DNA provides insight into future adaptive trajectories.

Ancient DNA (aDNA) has been applied to evolutionary questions across a wide variety of taxa. Here, for the first time, we utilized aDNA from millennia-old fossil coral fragments to gain new insights into a rapidly declining western Atlantic reef ecosystem. We sampled four Acropora palmata fragments (dated 4215 BCE to 1099 CE) obtained from two Florida Keys reef cores. From these samples, we established that it is possible both to sequence aDNA from reef cores and place the data in the context of modern-day genetic variation. We recovered varying amounts of nuclear DNA exhibiting the characteristic signatures of aDNA from the A. palmata fragments. To describe the holobiont sensu lato, which plays a crucial role in reef health, we utilized metagenome-assembled genomes as a reference to identify a large additional proportion of ancient microbial DNA from the samples. The samples shared many common microbes with modern-day coral holobionts from the same region, suggesting remarkable holobiont stability over time. Despite efforts, we were unable to recover ancient Symbiodiniaceae reads from the samples. Comparing the ancient A. palmata data to whole-genome sequencing data from living acroporids, we found that while slightly distinct, ancient samples were most closely related to individuals of their own species. Together, these results provide a proof-of-principle showing that it is possible to carry out direct analysis of coral holobiont change over time, which lays a foundation for studying the impacts of environmental stress and evolutionary constraints.

Vibrio tetraodonis subsp. pristinus subsp. nov., isolated from the coral Acropora cytherea at Palmyra Atoll, and creation and emended description of Vibrio tetraodonis subsp. tetraodonis subsp. nov.

Strain OCN044T was isolated from the homogenised tissue and mucus of an apparently healthy Acropora cytherea coral fragment collected from the western reef terrace of Palmyra Atoll in the Northern Line Islands and was taxonomically evaluated with a polyphasic approach. The morphological and chemotaxonomic properties are consistent with characteristics of the genus Vibrio: Gram-stain-negative rods, oxidase- and catalase-positive, and motile by means of a polar flagellum. Strain OCN044T can be differentiated as a novel subspecies based on 21 differences among chemotaxonomic features (e.g., fatty acids percentages for C12:0 and C18:1 ω7c), enzymatic activities (e.g., DNase and cystine arylamidase), and carbon sources utilized (e.g., L-xylose and D-melezitose) from its nearest genetic relative. Phylogenetic analysis and genomic comparisons show close evolutionary relatedness to Vibrio tetraodonis A511T but the overall genomic relatedness indices identify strain OCN044T as a distinct subspecies. Based on a polyphasic characterisation, differences in genomic and taxonomic data, strain OCN044T represents a novel subspecies of V. tetraodonis A511T, for which the name Vibrio tetraodonis subsp. pristinus subsp. nov. is proposed. The type strain is OCN044T (= LMG 31895T = DSM 111778T).

Sr isotope variations in Oligocene–Miocene and modern biogenic carbonate formations of Koko Guyot (Emperor Seamount Chain, Pacific Ocean)

The Hawaiian–Emperor Seamount Chain, a major topographic feature of the Pacific Ocean floor, is composed of seamounts capped with fossil coral reef deposits that originally formed close to sea level but are now covered by hundreds of meters of water owing to prolonged subsidence. These fossil reef deposits are important archives of paleoenvironmental change and yield information on the subsidence history of the seamounts. We studied the Sr isotope compositions of Oligocene–Miocene coral reef limestone from Koko Guyot in the southern Emperor Seamount Chain to assess the dynamics of the subsidence. The ages of the studied samples containing coral fragments established by Sr isotope stratigraphy vary from 26.3 to 20.1 Ma. In contrast, the youngest samples (15.3 Ma), which were deposited in water depths of >120 m, are barren of corals and are composed exclusively of bryozoans and coralline algae. The subsidence rate of the Koko Guyot volcanic structure was not constant over time. Integration of our new data with the results of previous studies reveals that the subsidence rate was 0.046 ± 0.005 mm/yr during the first 25–30 Myr (from 49–44 to 20 Ma). During this period, Koko Guyot was in a bathymetric interval favorable for coral reef development, and its subsidence was compensated by rapid vertical growth of the reef. Subsequently, the subsidence rate decreased to an average value of 0.019 ± 0.003 mm/yr from 20 to 15 Ma. The decrease in the rate of bottom subsidence coincided with unfavorable environmental conditions for coral reef development, leading to the disappearance of corals. The average subsidence rate has been 0.015 ± 0.002 mm/yr since 15 Ma, comparable to the present-day subsidence rate. We also analyzed the stable Sr isotope ratios (δ88/86Sr) of warm-water coral samples formed at 25–20 Ma (0.32‰ ± 0.1‰), as well as carbonate of large benthic foraminifera, coralline algae, and other non-coral species for the period 20–15 Ma (0.10‰ ± 0.09‰). We suggest that the large difference in carbonate δ88/86Sr between 25–20 and 20–15 Ma corresponds to a difference in the fractionation factor caused by environmental and benthic community change.

Pocillopora spp. growth analysis on restoration structures in an Eastern Tropical Pacific upwelling area.

Coral reefs in Culebra Bay (North Pacific of Costa Rica) are threatened by multiple anthropogenic disturbances including global warming, overfishing, eutrophication, and invasive species outbreaks. It is possible to assist their recovery by implementing ecological restoration techniques. This study used artificial hexagonal steel structures, called “spiders” to compare growth of Pocillopora spp. coral fragments of different sizes. Three initial fragment class sizes were used: 2, 5 and 8 cm, with each class size having 42 initial fragments. Changes in fragment length, width and area were measured monthly from January to December 2020. Results showed an overall survivorship of 70.21%, and no significant differences in survivorship and linear growth rate were detected between class sizes. The linear growth rates are 4.49 ± 1.19 cm year−1, 5.35 ± 1.48 cm year−1 and 3.25 ± 2.22 cm year−1 for the 2, 5 and 8 cm initial class sizes, respectively. Our results do not show significant differences in growth rates between the different initial fragment sizes. However, since small fragments (2 cm) present higher mortality during the first month, we recommend using larger fragments. In addition, coral fragments grew 48% more during the non-upwelling season, which may suggest that it might be more effective and safer to start the restoration efforts during this period.

Microplastics do not affect bleaching of Acropora cervicornis at ambient or elevated temperatures.

Microplastic pollution can harm organisms and ecosystems such as coral reefs. Corals are important habitat-forming organisms that are sensitive to environmental conditions and have been declining due to stressors associated with climate change. Despite their ecological importance, it is unclear how corals may be affected by microplastics or if there are synergistic effects with rising ocean temperatures. To address this research gap, we experimentally examined the combined effects of environmentally relevant microplastic concentrations (i.e., the global average) and elevated temperatures on bleaching of the threatened Caribbean coral, Acropora cervicornis. In a controlled laboratory setting, we exposed coral fragments to orthogonally crossed treatment levels of low-density polyethylene microplastic beads (0 and 11.8 particles L−1) and water temperatures (ambient at 28 °C and elevated at 32 °C). Zooxanthellae densities were quantified after the 17-day experiment to measure the bleaching response. Regardless of microplastic treatment level, corals in the elevated temperature treatment were visibly bleached and necrotic (i.e., significant negative effect on zooxanthellae density) while those exposed to ambient temperature remained healthy. Thus, our study successfully elicited the expected bleaching response to a high-water temperature. However, we did not observe significant effects of microplastics at either individual (ambient temperature) or combined levels (elevated temperature). Although elevated temperatures remain a larger threat to corals, responses to microplastics are complex and may vary based on focal organisms or on plastic conditions (e.g., concentration, size, shape). Our findings add to a small but growing body of research on the effects of microplastics on corals, but further work is warranted in this emerging field to fully understand how sensitive ecosystems are affected by this pollutant.

Development and growth of massive coral Lobophyllia hemprichii transplanted on Pramuka Island, Thousand Islands, Jakarta

The condition of coral reefs in Indonesia is declining, one of the efforts to restore the condition is to carry out coral transplants. The method used in this research is fragmentation transplantation. This study was conducted to determine the effect of fragmentation (cutting) on coral species Lobophyllia hemprichii from F1 parent transplants carried out on Pramuka Island, Seribu Islands Jakarta. There were two types of coral cutting treatment, namely L1 (wound 1) and L2 (wound 2), with 14 replications. This study showed that there was no effect on the number of cuttings on the survival (SR) and growth of the sub-massive coral Lobophyllia hemprichii (P>0.05). All coral fragments were alive until the end of the observation (SR=100%) and there was an increase in fragment length every month in 2 treatments. The increase in length over 6 months in corals with 1 wound was 10.17 mm (from 67.48 mm to 79.65 mm) and in corals with 2 wounds was 11.74 mm (from 79.01 mm to 90.75 mm). Coral growth rate was also not significantly different between the two treatments (P>0.05), with a range of 1.54-1.94 mm/month (wound 1) and 1.49-3.16 mm/month (wound 2). The growth rate increased after the corals recovered from wound healing (after 5 months of transplantation).

In situ transplantation of soft coral Sarcophyton sp in concrete pool

Coral habitats; however, this is not easy. Strong currents, temperature fluctuations, competition with other organisms, predators, and food availability are problems in coral transplantation. The obstacles are eliminated by transplanting coral under controlled environmental conditions. This study was aimed to determine the growth of transplanted soft corals Sarcophyton sp in a concrete pool. The increase in length, width, and area of coral fragments only occurs at certain times. The growth rate of length, width, and soft corals fluctuates every week and tends to decline. The growth rate reached the highest at week-6, 0.388 cm for the coral without additional feeding and 0.744 cm for corals with supplementary feed. However, after that, the rate of growth fluctuated again. Despite the decline in development, all soft corals transplanted had a 100% survival rate until the end of life care. In addition, all the soft corals were in healthy condition.

Adoption of coral propagation and out-planting via the tourism industry to advance site stewardship on the northern Great Barrier Reef

Coral propagation via nurseries and out-planting practices has increased worldwide in the last decade to improve stakeholder-led stewardship aimed at retaining or rehabilitating local reef site health. Until 2017/18, stewardship activities by the tourism industry on the Great Barrier Reef (GBR) have been restricted to operations such as corallivore control and environmentally responsible operations. However, back-to-back bleaching events in 2016/17 catalysed implementation of coral propagation at “high-value” tourism sites, with the goal to overcome conventional cost-efficiency limitations associated with growing and re-planting (out-planting) coral via a novel tourism-research partnership model, “Coral Nurture Program” (CNP) in Far North Queensland. Staged implementation across partners (Phase 1 – “development” via 1 operator; Phase 2 – “adoption” via 4 further operators) resulted in establishment of 72 coral nurseries stocked with >4500 coral fragments from >36 species and out-planting of 21,020 coral fragments of >29 species using a rapid deployment device (Coralclip®). Key elements to the success of CNP were identified through regular partner meetings, and included utilising complimentary expertise, resources and knowledge essential to the continued improvement of best practice and standard operating procedures from both researchers and operators. Here, we specifically examine activity of the CNP from its inception (February 2018) until December 2020, to compare and evaluate how collective propogation by multiple tourism operators coupled with research validation can collaboratively enhance site stewardship at scale across GBR high-value tourism sites. Similarities are drawn between our CNP model and other stewardship-based management models, including adherence to a “code of operation” that ensures trust and equitability across partners. Novel aspects driving CNP success include the flexibility in adoption of CNP workflows to suit individual business preferences (e.g.conducting activity during normal day to day tourism operations versus tourism downturns (e.g. COVID-19)), and use of research to guide objective improvements in site (operator)-specific effectiveness of out-planting and nursery success. In doing so, we use CNP to identify how our tourism-research coral propagation approach could aid stewardship-based management of other reefs where economies are reliant on tourism.

The Impact of Seasonal Weather Changes on the Accumulated Sediments within Back-Reef Environment around Umm Al-Maradim island- Kuwait

This study is based on petrographic, geochemical and mechanical analysis of all collected samples from the intertidal zone around the southern Umm Al-Maradim Island in Kuwait. The objective is to interpret the impact of seasons conditions on coral buildups around the island. Petrographic study revealed that the intertidal area is a part of a back-reef environment which is composed of the accumulation of broken up coral debris, coralline algae, foraminifera, echinoderms particles, bivalves, and gastropods. Generally, most abundant grain sizes along the shores are coarse and very coarse sand size, indicating short distance of transport and high wave action. Short transportation distance and fast sedimentation resulted in the accumulation of poorly sorted and strongly coarse to coarse skewed sediments. Detailed study of the samples shows variations in grain size parameters as well as type of accumulated sediments between the different seasons and locations along the island, which is mainly related to the differences in wind intensity, changes in prevailing wind direction, and biological activities affecting the coral reefs. Geochemical study suggests an aragonitic and low-Mg calcite composition for the coral fragments, as well as a pathetic relationship between all tested major elements within the collected sediments.

Identification of coral endosymbionts of Veedhalai and Mandapam coasts of Palk Bay, India using small subunit rDNA.

Coral endosymbionts act as a bio-indicator of coral ecosystem under extreme environmental conditions. The health of the coral ecosystem depends on the endosymbiont cell density of the coral hosts. Therefore, it is of interest to analyze ten coral fragments found to be under the genera Acropora, Favites, Favia, and Porites collected at various locations from Veedhalai to Mandapam, southeast coast of India during January 2019 to March 2019. The zooxanthellae cell count ranged between 4.08 (Porites sp.9) and 13.75x105 cells cm2 -1 (Favites sp.3). This indicates the health of the corals in the region. The genus (clade) level identification of endosymbionts was detected using the host excluding primers of small subunit DNA (nssrDNA). Bidirectional sequencing of 18S nrDNA gene (SSU) of all ten coral fragments show that the Veedhalai corals is associated with the genus Durusdinium (Clade D) but the corals of Mandapam is associated with the genera, Cladocopium (Clade C) and Durusdinium (Clade D). It is known that the thermal stress has negative impact on coral reef ecosystem of the world. The dominance of the genus Durusdinium in the scleractinian corals of Palk Bay may be due to frequent exposure to thermal stress. This thermotolerant endosymbionts is opportunistic. Thus, the corals of Veedhalai and Mandapam coasts, Palk Bay, India are necessarily packed with thermotolerant endosymbionts enabling conservation.

Inducing Polyp Bail-out in Coral Colonies to Obtain Individualized Micropropagates for Laboratory Experimental Use

Corals are colonial animals formed by modular units called polyps. Coral polyps are physiologically linked and connected by tissue. The phenomenon of polyp bail-out is a process induced by acute stress, in which coral polyps digest the tissue connecting them to the rest of the colony and ultimately detach from the skeleton to continue living as separate individuals. Coral biologists have acknowledged the process of polyp bail-out for years, but only recently the micropropagates generated by this process have been recognized as a model system for coral biology studies. The use of polyp bail-out can create a high number of clonal units from a single coral fragment. Another benefit is that single polyps or patches of polyps can be easily visualized under a microscope and maintained in highly standardized low-cost environments such as Petri dishes, flasks, and microfluidic chips. The present protocol demonstrates reproducible methods capable of inducing coral micropropagation and different approaches for maintaining the single polyps alive in the long term. This methodology was capable of successfully cultivating polyps of the coral species Pocillopora verrucosa for up to 8 weeks after bail-out, exhibiting the practicality of using individual coral polyps for coral research.

Inducing Polyp Bail-out in Coral Colonies to Obtain Individualized Micropropagates for Laboratory Experimental Use

Corals are colonial animals formed by modular units called polyps. Coral polyps are physiologically linked and connected by tissue. The phenomenon of polyp bail-out is a process induced by acute stress, in which coral polyps digest the tissue connecting them to the rest of the colony and ultimately detach from the skeleton to continue living as separate individuals. Coral biologists have acknowledged the process of polyp bail-out for years, but only recently the micropropagates generated by this process have been recognized as a model system for coral biology studies. The use of polyp bail-out can create a high number of clonal units from a single coral fragment. Another benefit is that single polyps or patches of polyps can be easily visualized under a microscope and maintained in highly standardized low-cost environments such as Petri dishes, flasks, and microfluidic chips. The present protocol demonstrates reproducible methods capable of inducing coral micropropagation and different approaches for maintaining the single polyps alive in the long term. This methodology was capable of successfully cultivating polyps of the coral species Pocillopora verrucosa for up to 8 weeks after bail-out, exhibiting the practicality of using individual coral polyps for coral research.

The Influence of Foureye Butterflyfish (Chaetodon capistratus) and Symbiodiniaceae on the Transmission of Stony Coral Tissue Loss Disease

Marine diseases have caused large scale decreases in coral cover across the Caribbean and are unfortunately projected to increase as sea surface temperatures rise. Identifying the main drivers of disease transmission is essential for our understanding and response to diseases in the future. This study investigates the effects of direct-contact, waterborne, Symbiodiniaceae composition, and butterflyfish foraging on the transmission rates of stony coral tissue loss disease (SCTLD) across Montastraea cavernosa (MCAV) coral fragments. M. cavernosa fragments were placed in direct contact with diseased Orbicella and Montastraea colonies with the purpose of creating disease MCAV fragments for experimental trials with butterflyfish. Three treatments were used to investigate waterborne transmission (control), mechanically injury to a healthy coral (limited), and direct contact feeding across a diseased and healthy coral (unlimited). After the experimental trials, the composition of Symbiodiniaceae was analyzed for every MCAV fragment. Direct contact transmission took on average 3.9 days in 2019 and 11.9 days in 2020 with significantly quicker rates of transmission between donor diseased Orbicella and Montastraea than Montastraea to Montastraea. The composition of Symbiodiniaceae differed significantly between the fragments used in 2019 (dominated by Durusdinium) than in 2020 (dominated by Cladocopium spp.). The limited treatment had the quickest time to transmission compared to the unlimited and control treatments. Symbiodiniaceae differences between 2019 and 2020 might explain differences in transmission rates and overall susceptibility between the years. The species of Symbiodiniaceae may play a role in the susceptibility of corals to the transmission of SCTLD. Additionally, we also have some suggestive evidence that butterflyfish do not directly increase infection rates, but instead might be increasing infection recovery.

Does Predation Exacerbate the Risk of Endosymbiont Loss in Heat Stressed Hermatypic Corals? Molecular Cues Provide Insights Into Species-Specific Health Outcomes in a Multi-Stressor Ocean.

Ocean warming has been a major driver of coral reef bleaching and mass mortality. Coupled to other biotic pressures, corals’ ability for acclimatization and adaptation may become compromised. Here, we tested the combined effects of warming scenarios (26, 30, and 32°C) and predation (wound vs. no wound) in coral health condition (paleness, bleaching, and mortality), cellular stress responses (heat shock protein 70 kDa Hsp70, total ubiquitin Ub, and total antioxidant capacity TAC), and physiological state (integrated biomarker response index, IBR) of seven Scleractinian coral species, after being exposed for 60 days. Results show that although temperature was the main factor driving coral health condition, thermotolerant species (Galaxea fascicularis, Psammocora contigua, and Turbinaria reniformis) displayed increased paleness, bleaching, and mortality in predation treatments at high temperature, whereas thermosensitive species (Acropora tenuis, Echinopora lamellosa, and Montipora capricornis brown and green morphotypes) all died at 32°C, regardless of predation condition. At the molecular level, results show that there were significant main and interactive effects of species, temperature, and predation in the biomarkers assessed. Temperature affected Hsp70, Ub, and TAC, evidencing the role of protein folding and turnover, as well as reactive oxygen species scavenging in heat stress management. Predation increased Hsp70 and Ub, suggesting the activation of the pro-phenoloxidase system and cytokine activity, whereas the combination of both stressors mainly affected TAC during moderate stress and Ub under severe stress, suggesting that redox balance and defense of homeostasis are crucial in tissue repair at high temperature. IBR levels showed an increasing trend at 32°C in predated coral fragments (although non-significant). We conclude that coral responses to the combination of high temperature and predation pressure display high inter-species variability, but these stressors may pose a higher risk of endosymbiont loss, depending on species physiology and stress intensity.

Comparing different farming habitats for mid-water rope nurseries to advance coral restoration efforts in the Maldives.

The need for comprehensive and effective coral restoration projects, as part of a broader conservation management strategy, is accelerating in the face of coral reef ecosystem decline. This study aims to expand the currently limited knowledge base for restoration techniques in the Maldives by testing the performance of mid-water rope nurseries in a lagoon and a reef habitat. We examined whether different coral farming habitats impacted fragment survival, health and growth of two coral genera and how the occurrence of mutualistic fauna, predation and disease influenced coral rearing success. Two nurseries were stocked with a total of 448 Pocillopora verrucosa and 96 Acropora spp. fragments, divided into different groups (four Pocillopora groups: lagoon nursery at 5 m; reef nursery at 5, 10 and 15 m; two Acropora groups: lagoon nursery at 5 m and reef nursery at 5 m). Eight fragment replicates from the same donor colony (Pocillopora genets: N = 14, Acropora genets N = 6) were used in each group and monitored for one year. Our results show that fragment survival was high in both farming habitats (>90%), with P. verrucosa surviving significantly better in the lagoon and Acropora spp. surviving and growing significantly faster in the reef nursery. P. verrucosa growth rates were similar between reef and lagoon habitat. Different rearing depths in the reef nursery had no impact on the survival of P. verrucosa but coral growth decreased considerably with depth, reducing fragments’ ecological volume augmentation and growth rates by almost half from 5 to 15 m depth. Further, higher fish predation rates on fragments were recorded on the reef, which did not impact overall nursery performance. Mutualistic fauna, which correlated positively with fragment survival, was more frequently observed in the lagoon nursery. The occurrence of disease was noted in both habitats, even though implications for fragment health were more severe in the lagoon. Overall, our study demonstrates that lagoon and reef nurseries are suitable for rearing large numbers of coral fragments for transplantation. Nevertheless, we recommend considering the specific environmental conditions of the farming habitat, in particular water quality and year-round accessibility, in each case and to adjust the coral farming strategy accordingly. We hope that this novel research encourages the increased application of mid-water rope nurseries for ‘coral gardening’ to advance coral reef recovery and climate resilience in the Maldives.

The role of the endolithic alga Ostreobium spp. during coral bleaching recovery

In this study, we explore how the Caribbean coral Orbicella faveolata recovers after bleaching, using fragments from 13 coral colonies exposed to heat stress (32 °C) for ten days. Biological parameters and coral optical properties were monitored during and after the stress. Increases in both, the excitation pressure over photosystem II (Qm) and pigment specific absorption (a*Chla) were observed in the stressed corals, associated with reductions in light absorption at the chlorophyll a red peak (De675) and symbiont population density. All coral fragments exposed to heat stress bleached but a fraction of the stressed corals recovered after removing the stress, as indicated by the reductions in Qm and increases in De675 and the symbiont population observed. This subsample of the experimentally bleached corals also showed blooms of the endolithic algae Ostreobium spp. underneath the tissue. Using a numerical model, we quantified the amount of incident light reflected by the coral, and absorbed by the different pigmented components: symbionts, host-tissue and Ostreobium spp. Our study supports the key contribution of Ostreobium spp. blooms near the skeletal surface, to coral recovery after bleaching by reducing skeleton reflectance. Endolithic blooms can thus significantly alleviate the high light stress that affects the remaining symbionts during the stress or when the coral has achieved the bleached phenotype.

Evidence for de novo acquisition of microalgal symbionts by bleached adult corals

Early life stages of most coral species acquire microalgal endosymbionts (Symbiodiniaceae) from the environment, but whether exogenous symbiont uptake is possible in the adult life stage is unclear. Deep sequencing of the Symbiodiniaceae ITS2 genetic marker has revealed novel symbionts in adult corals following bleaching; however these strains may have already been present at densities below detection limits. To test whether acquisition of symbionts from the environment occurs, we subjected adult fragments of corals (six species in four families) to a chemical bleaching treatment (menthol and DCMU). The treatment reduced the native microalgal symbiont abundance to below 2% of their starting densities. The bleached corals were then inoculated with a cultured Cladocopium C1acro strain. Genotyping of the Symbiodiniaceae communities before bleaching and after reinoculation showed that fragments of all six coral species acquired the Cladocopium C1acro strain used for inoculation. Our results provide strong evidence for the uptake of Symbiodiniaceae from the environment by adult corals. We also demonstrate the feasibility of chemical bleaching followed by reinoculation to manipulate the Symbiodiniaceae communities of adult corals, providing an innovative approach to establish new symbioses between adult corals and heat-evolved microalgal symbionts, which could prove highly relevant to coral reef restoration efforts.

Host-specific epibiomes of distinct Acropora cervicornis genotypes persist after field transplantation

Microbiome studies across taxa have established the influence of host genotype on microbial recruitment and maintenance. However, research exploring host-specific epibionts in scleractinian corals is scant, and the influence of intraspecific differences across environments remains unclear. Here, we studied ten Acropora cervicornis genotypes to investigate the relative roles of host genotype and environment in structuring the epibiome. Coral mucus was sampled in a common garden nursery from replicate ramets of distinct genotypes (T0). Coral fragment replicates (n = 3) of each genotype were then transplanted to nine different field sites in the Lower Florida Keys, and mucus was again sampled one year later from surviving ramets (T12). 16S rRNA amplicon sequencing was used to assess microbial composition, richness, and beta-diversity. The most abundant and consistent amplicon sequencing variants (ASVs) in all samples belonged to Midichloriaceae (MD3-55 genus) and Cyanobacteria (Synechococccus). The relative abundances of these bacterial taxa varied consistently between genotypes, whereas neither the composition nor taxonomic relative abundance were significantly different among field sites. Interestingly, several high MD3-55 hosting genotypes showed rapid diversification and an increase in MD3-55 following transplantation. Overall, our results indicate healthy A. cervicornis genotypes retain distinct epibiome signatures through time, suggesting a strong host component. Lastly, our results show that differences in MD3-55 abundances can be consistently detected in the epibiome of distinct host genotypes of A. cervicornis. As this organism (sensu Aquarickettsia rohweri) has been implicated as a marker of disease resistance, this finding reinforces the potential use of microbial indicators in reef restoration efforts via non-invasive surface/mucus sampling.