Urease inhibitors (UIs) can improve soil nutrients, reduce soil nitrogen loss, increase nitrate nitrogen content, and help soil maintain nutrients. Because the already available inhibitors were harmful and inefficient, it was critical to develop and manufacture a new family of UIs with high efficiency. In this paper, two copper-based coordination polymers (Cu-CPs) were prepared and served as UIs, which showed that the Cu-CPs had good inhibitory effects on urease and the inhibitory rates were 0.83 ± 0.01 μM and 4.22 ± 0.51 μM. The kinetics of the UIs were determined that the Cu-CPs were anti-competitive inhibition modes with corresponding dissociation constants Ki of 1.52 μM and 5.32 μM. The results of molecular docking show that the two series of active compounds have obvious binding effect on the active site of urease. Furthermore, the oxygen atoms of –COO and μ2-OH groups play critical roles in urease inhibition action.