Complete Tree Research Articles

Application of the Impedance Measurement Method to Evaluate the Results of Winter Grafting of Pear Cuttings Using Cold Plasma

Electroimpedance spectroscopy technology can be used to accelerate the healing of complete trees and estimate the plant condition after grafting. This approach will allow sorting out low-vigor plants at the early stages of their development to save time and resources. Still, in some cases, the use of electrical impedance spectroscopy can be difficult due to the complexity of the equipment and special measurement conditions. In this paper, we attempt to overcome this limitation by suggesting a compact device developed in-house that is usable even in the field. Pear (Pyrus communis L.) Otradnenskaya was used as the object of this study. We assessed the treatment effect of the scion–rootstock interface with cold atmospheric plasma (CAP) and plasma-treated solution (PTS) on the survival of the grafts. The dependence of the impedance of the complete grafted tree on the signal frequency and the length of the measuring section was analyzed. It is shown that the treatment of the scion and rootstock with CAP and PTS promotes the fusion of scion and rootstock. The impedance value in the control was on average 24–35% higher than in plants treated with CAP and PTS, which indicates a better healing process of the grafting site. This can be an indication of better quality of the planting material which can be obtained much earlier than with the conventional approach (monitoring the plants in a nursery).

Independence and inverse domination in complete z-ary tree and Jahangir graphs

This article includes different properties of the independence and domination (total domination, independent domination, co-independent domination) number of the complete z-ray root and Jahangir graphs. Also, the inverse domination number of these graphs of variant dominating sets (total dominating, independent dominating, co-independent dominating) is determined.

Tree trace reconstruction using subtraces

AbstractTree trace reconstruction aims to learn the binary node labels of a tree, given independent samples of the tree passed through an appropriately defined deletion channel. In recent work, Davies, Rácz, and Rashtchian [10] used combinatorial methods to show that $\exp({\mathrm{O}} (k \log_{k} n))$ samples suffice to reconstruct a complete k-ary tree with n nodes with high probability. We provide an alternative proof of this result, which allows us to generalize it to a broader class of tree topologies and deletion models. In our proofs we introduce the notion of a subtrace, which enables us to connect with and generalize recent mean-based complex analytic algorithms for string trace reconstruction.

Entropy of Weighted Graph by Edge Weights by Using Sombor Reduced Index

This paper delves into the exploration of entropy in weighted graphs, where edge weights are determined by the Sombor Reduced Index. The primary aim is to establish and substantiate results by examining various graph types, including Connected Graphs, Star Graphs, Unicyclic Graphs, Regular Graphs, Complete Graphs, Complete Bipartite Graphs, Chemical Graphs, and Tree Graphs. Through rigorous analysis, we unveil the implications of these weighted structures on information content and structural complexities. Additionally, we extend our study to compute weighted entropies for molecular graphs representing specific dendrimer structures. This research contributes to a nuanced understanding of the informational intricacies embedded in diverse graph configurations, particularly emphasizing their significance in the molecular domain.

Push-Down Trees: Optimal Self-Adjusting Complete Trees

This paper studies a fundamental algorithmic problem related to the design of demand-aware networks: networks whose topologies adjust toward the traffic patterns they serve, in an online manner. The goal is to strike a tradeoff between the benefits of such adjustments (shorter routes) and their costs (reconfigurations). In particular, we consider the problem of designing a self-adjusting tree network which serves single-source, multi-destination communication. The problem is a central building block for more general self-adjusting network designs and has interesting connections to self-adjusting datastructures. We present two constant-competitive online algorithms for this problem, one randomized and one deterministic. Our approach is based on a natural notion of Most Recently Used (MRU) tree, maintaining a working set. We prove that the working set is a cost lower bound for any online algorithm, and then present a randomized algorithm RANDOM- PUSH which approximates such an MRU tree at low cost, by pushing less recently used communication partners down the tree, along a random walk. Our deterministic algorithm Move-Half does not directly maintain an MRU tree, but its cost is still proportional to the cost of an MRU tree, and also matches the working set lower bound.

Seasonal Growth of Pine Tree Rings: Comparison of Direct Observations and Simulation

Repetitive observations (direct measurements) of seasonal kinetics of xylogenesis and simulations (proxy data) with tree growth models are the two main approaches available to assess tree-ring growth and development. Both have drawbacks: short cover period for observations; limited accuracy of simulations depending on input data for models. We proposed an implementation of both approaches on the same trees to find ways for compensation. Cell numbers at subsequent xylogenesis stages were observed for Pinus sylvestris L. over five seasons in moisture-deficient habitats of Southern Siberia. The Vaganov–Shashkin model was parameterized for species and soil-landscape conditions to fit local tree-ring width chronologies (R = 0.56–0.73). Seasonal kinetics variables were then compared among themselves and with the simulated environmentally driven growth rate. The number of cells in the cambial and cell enlargement zone closely followed the curve of the 15-day moving average of the simulated growth rate (R = 0.56–0.87 at one site and R = 0.78–0.89 after shifting rate curve forward by 17–20 days at another site). The maximum number of cambium cells, which occurred within three weeks of the summer solstice, was found to be positively related with the number of tracheids in the complete tree ring (R2 = 0.12–0.75 for individual seasons and 0.49 for total dataset), making it a promising short-term forecast variable for tree radial growth and productivity.

Order-couniversality of the complete infinitary tree: An application of zero-divisor graphs

Let be the class of countably infinite bounded partially ordered sets such that every non-minimum element of has only finitely many successors, and has infinitely many immediate predecessors. Write for the poset obtained by introducing maximum and minimum elements to the complete infinitary tree of nonempty finite sequences of positive integers, where if is an extension of . A poset is called -couniversal if and for every there is a bijective poset-homomorphism . In this paper, couniversality is linked to zero-divisor graphs of partially ordered sets. It is proved that is -couniversal if and only if every non-maximum element of is a (poset-theoretic) zero-divisor of , and the zero-divisor graph of is a spanning subgraph of the zero-divisor graph of .

An Insight into an Olive Scab on the "Istrska Belica" Variety: Host-Pathogen Interactions and Phyllosphere Mycobiome.

The olive tree is one of the most important agricultural plants, affected by several pests and diseases that cause a severe decline in health status leading to crop losses. Olive leaf spot disease caused by the fungus Venturia oleaginea can result in complete tree defoliation and consequently lower yield. The aim of the study was to obtain new knowledge related to plant-pathogen interaction, reveal mechanisms of plant defense against the pathogen, and characterize fungal phyllosphere communities on infected and symptomless leaves that could contribute to the development of new plant breeding strategies and identification of novel biocontrol agents. The highly susceptible olive variety "Istrska Belica"' was selected for a detailed evaluation. Microscopy analyses led to the observation of raphides in the mesophyll and parenchyma cells of infected leaves and gave new insight into the complex V. oleaginea pathogenesis. Culturable and total phyllosphere mycobiota, obtained via metabarcoding approach, highlighted Didymella, Aureobasidium, Cladosporium, and Alternaria species as overlapping between infected and symptomless leaves. Only Venturia and Erythrobasidium in infected and Cladosporium in symptomless samples with higher abundance showed statistically significant differences. Based on the ecological role of identified taxa, it can be suggested that Cladosporium species might have potential antagonistic effects on V. oleaginea.

The Valcheta Petrified Forest (Upper Cretaceous), northern Patagonia, Argentina: A geological and paleobotanical survey

The Valcheta Petrified Forest is located in the northeast of the Río Negro Province, Argentina. This work provides a geological characterization of the site and a survey of the fossil logs exposed on the surface and their systematic study. The fossiliferous levels bearing the silicified logs are here referred to the Allen Formation (middle-upper Campanian – lower Maastrichtian, Malargüe Group). These deposits crop out in patches in the study area, and have been deposited on a paleorelief carved in Eopaleozoic rocks of the Nahuel Niyeu Formation being mostly covered by thin layers of Quaternary sediments. The Valcheta Petrified Forest was developed on the margins of a braided fluvial system. Numerous silicified logs have been located at the site. They consist of large axes, not found in life position, with monopodial growth, some of which retain the bases of lateral branches and flared-like base. The estimated height and ages of these trees suggests that it consisted of a mature forest. No other associated vegetative or reproductive structures have been found. Anatomically, a single xylological type has been distinguished and assigned to Podocarpoxylon mazzonii (Petriella) Müller-Stoll et Schultze-Motel, (Podocarpaceae). This taxon has been previously identified from other localities of the Upper Cretaceous to the Danian of Patagonia although never preserved in such complete tree grow architecture. This shows that, along others conifers, cycads and palms, P. mazzonii would have constituted an important element of the arboreal strata in the North Patagonian forest communities during the Campanian–Danian interval producing monotypic patches in some areas.

Tree Species Classification Based on Fusion Images by GF-5 and Sentinel-2A

Forest ecosystem detection and assessment usually requires accurate spatial distribution information of forest tree species. Remote sensing technology has been confirmed as the most important method for tree species acquisition, and space-borne hyperspectral imagery, with the advantages of high spectral resolution, provides a better possibility for tree species classification. However, the present in-orbit hyperspectral imager has proved to be too low in spatial resolution to meet the accuracy needs of tree species classification. In this study, we firstly explored and evaluated the effectiveness of the Gram-Schmidt (GS) Harmonic analysis fusion (HAF) method for image fusion of GaoFen-5 (GF-5) and Sentinel-2A. Then, the Integrated Forest Z-Score (IFZ) was used to extract forest information from the fused image. Next, the spectral and textural features of the fused image, and topographic features extracted from DEM were selected according to random forest importance ranking (Mean Decreasing Gini (MDG) and Mean Decreasing Accuracy (MDA)), and imported into the random forest classifier to complete tree species classification. The results showed that: comparing some evaluation factors such as information entropy, average gradient and standard deviation of the fused images, the GS fusion image was proven to have a higher degree of spatial integration and spectral fidelity. The random forest importance ranking showed that WBI, Aspect, NDNI, ARI2, FRI were more important for tree species classification. Both the classification accuracy and kappa coefficients of the fused images were significantly greatly improved when compared to those of original GF-5 images. The overall classification accuracy ranged from 61.17% to 86.93% for different feature combination scenarios, and accuracy of the selected method based on MDA achieved higher results (OA = 86.93%, Kappa = 0.85). This study demonstrated the feasibility of fusion of GF-5 and Sentinel-2A images for tree species classification, which further provides good reference for application of in-orbit hyperspectral images.

Waltheria marielleae (Byttnerioideae, Malvaceae), a new species from north-eastern Brazil supported by morphological and phylogenetic evidence

Background – Waltheria marielleae is a new species of Malvaceae endemic to north-eastern Brazil that occurs only in the states of Pernambuco and Alagoas, in areas of Atlantic Forest and Caatinga. It is characterized by cinereous leaves, axillary and sessile to subsessile inflorescences, pallid yellow corollas with apically eciliate petals and fan-plumose stigmas. Material and methods – DNA was extracted from leaf tissue and the markers matK, ndhF, and ITS were amplified using universal primers, with PCR products purified and sequenced. Phylogenetic analysis was performed, including DNA sequences obtained from GenBank. Morphological studies were based on the analysis of specimens deposited in seven herbaria and specimens collected in Pernambuco state, Brazil. Results – Waltheria marielleae is morphologically and phylogenetically related to pantropical W. indica and W. ackermanniana, with these three species forming a well-supported clade. Overall, phylogenetic molecular analysis suggests the monophyly of Waltheria, with the two currently proposed sections also being monophyletic, and Melochia as its sister group. The new species is assessed here as Endangered, according to IUCN criteria. In addition, we formally present new occurrences of W. ackermanniana and W. rotundifolia. Conclusion – In this study, a complete morphological description, illustration, distribution map, and phylogenetic tree are provided for Waltheria marielleae. This species is compared with morphologically and phylogenetically related species (W. ackermanniana, W. indica, and W. rotundifolia) and an identification key to the species occurring in Alagoas and Pernambuco is provided.

Commutativity of entropy for nonautonomous systems on trees

In this paper, we show that the commutativity of the entropy for nonautonomous Markov systems holds on an aperiodic recursive tree. Then the similar result is extended to p-periodic and anisotropic systems. Finally, we give a characterization for a Markov tree to be a complete recursive tree in terms of the properties of the associated adjacency matrix.

Extinction and hybridization in a neutral model of speciation

Evolution is usually pictured as a tree where ancient species branch into new ones and eventually disappear. In this simplified view, the balance between speciation and extinction fully determines the diversity of life. Hybridization, however, introduces another level of complexity, allowing neighboring branches of the tree to interact, mixing their genetic content. This generates further diversity leading to reticulated trees. In this paper we study processes of speciation, extinction and hybridization using a genetically and spatially explicit neutral model of diversification. The model is based on the Derrida–Higgs formulation, where the genome of haploid individuals is represented by binary strings and reproduction is constrained by genetic similarity. Tracking all events of speciation, extinction and hybridization throughout the evolutionary process allows us to compute complete and exact phylogenetic trees. We found that genome size played a key role in these processes, increasing the extinction rate and decreasing the hybridization rate. Only in the limit of large genomes the simplified picture of a branching tree is recovered. Most hybridization events occurred between relatively abundant species, discarding lack of sexual partners or small population sizes as potential causes. We found that hybridization occurred mostly because of opportunity (genetic similarity and spatial proximity) between recently branched species, when the number of accumulated mutations is not yet too large.

When did bumblebees reach South America? Unexpectedly old montane species may be explained by Mexican stopover (Hymenoptera: Apidae)

A problem for understanding bumblebee biogeography is that if bumblebees dispersed from Asia through North America to South America, if they are poor at long-distance dispersal with establishment over sea, and if the land bridge between North and South America was not established until c. 3 Ma BP, then there is an apparent conflict with the divergence among currently endemic South American lineages having been dated as early as 15–17 Ma. Using the first complete phylogenetic trees for all known and accepted extant species of the groups involved, we show how this conflict could be resolved. We suggest that characterizing bumblebees as being associated generally with temperate flower-rich meadows conflates divergent habitat specializations between two early lineages, associated with northern lowland grasslands and with southern montane grasslands respectively, which may have driven divergences in behaviour and in biogeographic processes. First, for most of the lowland grassland group of bumblebees, estimated dates of divergence are consistent with dispersal to South America via the land-bridge corridor that opened at c. 3 Ma, followed by extant endemic lineages diverging in situ within South America. In contrast, for the second group that occupies montane grassland habitats (and for a few montane lineages of the ‘lowland’ group), we suggest that dispersal to South America at c. 3 Ma could be consistent with older divergence for currently endemic species if: (1) many of the extant South American lineages had already diverged outside the region before 3 Ma in neighbouring Mesoamerica; and (2) they had been constrained within the high mountains there, dispersing southwards into South America only once the isthmus corridor had become established; and (3) some of those ancestral montane lineages had become extirpated from Mesoamerica during subsequent warm climatic fluctuations. This interpretation re-emphasizes that biogeographic studies need to consider habitat-specific dispersal models that change through time.

Strong Vertex Coloring in Bipolar Fuzzy Graphs

Bipolar fuzzy graph (BFG) coloring techniques are used to solve many complex real world problems. The chromatic number of complement of BFG is obtained and compared with the chromatic number of the corresponding BFGs. This paper is an attempt to define coloring in a BFG based on strong edges. The strong chromatic number of complete BFG and BF tree are obtained.

Automated quantification of airway wall thickness on chest CT using retina U-Nets – Performance evaluation and application to a large cohort of chest CTs of COPD patients

PurposeAirway wall thickening is a consequence of chronic inflammatory processes and usually only qualitatively described in CT radiology reports. The purpose of this study is to automatically quantify airway wall thickness in multiple airway generations and assess the diagnostic potential of this parameter in a large cohort of patients with Chronic Obstructive Pulmonary Disease (COPD). Materials and methodsThis retrospective, single-center study included a series of unenhanced chest CTs. Inclusion criteria were the mentioning of an explicit COPD GOLD stage in the written radiology report and time period (01/2019–12/2021). A control group included chest CTs with completely unremarkable lungs according to the report. The DICOM images of all cases (axial orientation; slice-thickness: 1 mm; soft-tissue kernel) were processed by an AI algorithm pipeline consisting of (A) a 3D-U-Net for det detection and tracing of the bronchial tree centerlines (B) extraction of image patches perpendicular to the centerlines of the bronchi, and (C) a 2D U-Net for segmentation of airway walls on those patches. The performance of centerline detection and wall segmentation was assessed. The imaging parameter average wall thickness was calculated for bronchus generations 3–8 (AWT3-8) across the lungs. Mean AWT3-8 was compared between five groups (control, COPD Gold I-IV) using non-parametric statistics. Furthermore, the established emphysema score %LAV-950 was calculated and used to classify scans (normal vs. COPD) alone and in combination with AWT3-8. ResultsA total of 575 chest CTs were processed. Algorithm performance was very good (airway centerline detection sensitivity: 86.9%; airway wall segmentation Dice score: 0.86). AWT3-8 was statistically significantly greater in COPD patients compared to controls (2.03 vs. 1.87 mm, p < 0.001) and increased with COPD stage. The classifier that combined %LAV-950 and AWT3-8 was superior to the classifier using only %LAV-950 (AUC = 0.92 vs. 0.79). ConclusionAirway wall thickness increases in patients suffering from COPD and is automatically quantifiable. AWT3-8 could become a CT imaging parameter in COPD complementing the established emphysema biomarker %LAV-950. Clinical relevance statementQuantitative measurements considering the complete visible bronchial tree instead of qualitative description could enhance radiology reports, allow for precise monitoring of disease progression and diagnosis of early stages of disease.

3D modeling of laser-scanned trees based on skeleton refined extraction

Laser point cloud provides a high-precision data source for the 3D model reconstruction of existing trees. However, due to the complexity of tree structure and the data missing of point cloud, it is difficult to reconstruct complete, detailed and accurate 3D tree models from discrete points, especially the points are incomplete due to single-view scanning. To this end, a new point cloud driven method based on skeleton refined extraction is proposed in this paper. First, as the focus of refined modeling, the main (thick) branches are separated from the raw tree points. Then, the main branch points are over-segmented into some whorl-segments, and the corresponding raw points on the branch surfaces of each whorl-segment are shrunk to generate smooth, continuous and local detail preserved potential skeleton nodes of the main branches. Next, a new shortest path metric meeting the natural growth characteristics of trees is adopted to extract the complete, detailed and correctly connected tree skeleton from both of the shrunk main branch points and the non-main-branch points. After that, to ensure the skeleton centralization, especially that extracted from single-view scanned data, the extracted skeleton is translated by a combination of cylinder fitting and allometric theory. Finally, the complete, detailed and accurate 3D tree model is expressed by a series of cylinders based on the extracted refined skeleton. The proposed method is tested with 7 different tree point clouds, some of which are obtained by single-view scanning and suffer from serious data missing. Both qualitative and quantitative evaluations prove the effectiveness of this method for the refined reconstruction of trees from point clouds. Overall, the average modeling accuracy and its standard deviation of the used different trees are 2.58 cm and 3.20 cm respectively.

OS085 - Complete vascular tree reconstruction in rat decellularized liver scaffolds using differential recellularization pressures

OS085 - Complete vascular tree reconstruction in rat decellularized liver scaffolds using differential recellularization pressures

Forest tree dynamics from the first four years of permanent plot in Mount Papandayan, Indonesia: mortality, recruitment, and growth

A permanent plot is a powerful tool to study the vegetation’s dynamics and regeneration in the forest ecosystem. This study presents the first four-year tree vegetation monitoring in a one-hectare permanent plot established in a mixed forest of Mount Papandayan (MP) Nature Reserve, Indonesia. Besides studying the structure and floristic tree community composition in the plot, this study aims to study the changes and in mortality and growth of the tree community after four years of plot establishment. A one-hectare permanent plot was established in 2010 and all trees inside the plot with a diameter over 5 cm were tagged and measured in 2011 and 2015. There were 1,820 trees from 33 species and 20 families recorded during the first monitoring in 2011. Four years later, there were more trees recorded (1,845 trees) with an average growth rate of 1.17 cm. The mortality rate (2.8%) was lower than the recruitment rate (4.2%) and there were no changes in the domination of Distylium stellare. The results of this study will help to provide the preliminary data on actual in situ tree mortality and growth, which will help to develop a more complete tree species selection criteria for MP restoration.

Productivity, cost and product quality of complete-tree processing in orchard termination operations

To minimize the burden on periodical orchard termination and renewal, complete tree removal and processing represent the most effective work technique, when the above- and below-ground tree portions are kept together and removed in one single action. However, the presence of rootstocks imposes specific biomass processing techniques, when turning the removals into wood fuel. In particular, one needs to use a comminuting machine that can cope with soild contamination and introduce a cleaning step to remove soil particles from the feedstock. The goal of this research was to determine if one can efficiently process complete trees arising from orchard termination conducted as an integrated single-pass operation. The processing system under testing consisted of a commercial set-up commonly used when producing compost at recycle yards and was obtained by coupling a slow-speed shredder with a rotary sieve in an on-line arrangement. Productivity levels were quite stable, varying between 17 and 24 tPMH−1. Total system cost was 304 € per scheduled machine hour (SMH) and processing cost ranged from 18 to 25 €t−1. 82% of the input material ended into the fuelwood stream, which still contained some residual contamination estimated at 7% (close enough to the ash content of orchard pruning residues). Therefore, the cost of orchard termination and disposal is reduced, and an additional fuel stream can be captured and directed towards the expanding bioenergy sector. Combined shredding and screening represents a further example of integration and is essential to the efficient upgrading of complete tree material into a viable fuel.