ABSTRACT Avian metapneumovirus (aMPV) economically affects the global poultry industry causing respiratory and reproductive disorders. Considering the paucity of data on aMPV occurrence in European free-ranging avifauna, a molecular survey was conducted on wild birds of 23 species belonging to the orders Anseriformes, Charadriiformes or Passeriformes, captured alive and sampled in Northeast Italy as part of the national avian influenza virus (AIV) surveillance activities. A total of 492 oropharyngeal swabs, collected from 2007–2010, all AIV-negative, were screened from aMPV by subtype-specific qRT-PCR. An aMPV-C strain, named aMPV/C/IT/Wigeon/758/07, was found in a wintering young Eurasian wigeon (Mareca penelope) sampled in November 2007. The matrix, fusion, and attachment glycoprotein genes of the detected strain were subsequently amplified by specific independent RT-PCRs, then sequenced, and compared in a phylogenetic framework with known aMPV homologous sequences retrieved from GenBank. Close genetic relationships were found between the aMPV/C/IT/Wigeon/758/07 strain and subtype C Eurasian lineage strains isolated in the late 1990s in French domestic ducks, suggesting epidemiological links. Eurasian wigeons are medium/long-range migrant dabbling ducks that move along the Black Sea/Mediterranean flyway; our finding might, therefore, be related to migratory bridges between countries. To our knowledge, this is the first molecular evidence of the occurrence of aMPV subtype C in Italy and backdates the aMPV-C circulation to 2007. Moreover, the results suggest the susceptibility of Eurasian wigeons to aMPV. Broader investigations are needed to assess the role of wild ducks and the significance of the wildfowl/poultry interface in aMPV-C epidemiology. RESEARCH HIGHLIGHTS Wild birds live-captured in Italy were tested for aMPV detection and characterization. aMPV-C Eurasian lineage was found for the first time in a wintering Eurasian wigeon. Migratory birds could be involved in the aMPV epidemiology.

Improving our understanding of Mayaro virus (MAYV) ecology is critical to guide surveillance and risk assessment. We conducted a PRISMA-adherent systematic review of the published and grey literature to identify potential arthropod vectors and non-human animal reservoirs of MAYV. We searched PubMed/MEDLINE, Embase, Web of Science, SciELO and grey-literature sources including PAHO databases and dissertation repositories. Studies were included if they assessed MAYV virological/immunological measured occurrence in field-caught, domestic, or sentinel animals or in field-caught arthropods. We conducted an animal seroprevalence meta-analysis using a random effects model. We compiled granular georeferenced maps of non-human MAYV occurrence and graded the quality of the studies using a customized framework. Overall, 57 studies were eligible out of 1523 screened, published between the years 1961 and 2020. Seventeen studies reported MAYV positivity in wild mammals, birds, or reptiles and five studies reported MAYV positivity in domestic animals. MAYV positivity was reported in 12 orders of wild-caught vertebrates, most frequently in the orders Charadriiformes and Primate. Sixteen studies detected MAYV in wild-caught mosquito genera including Haemagogus, Aedes, Culex, Psorophora, Coquillettidia, and Sabethes. Vertebrate animals or arthropods with MAYV were detected in Brazil, Panama, Peru, French Guiana, Colombia, Trinidad, Venezuela, Argentina, and Paraguay. Among non-human vertebrates, the Primate order had the highest pooled seroprevalence at 13.1% (95% CI: 4.3–25.1%). From the three most studied primate genera we found the highest seroprevalence was in Alouatta (32.2%, 95% CI: 0.0–79.2%), followed by Callithrix (17.8%, 95% CI: 8.6–28.5%), and Cebus/Sapajus (3.7%, 95% CI: 0.0–11.1%). We further found that MAYV occurs in a wide range of vectors beyond Haemagogus spp. The quality of evidence behind these findings was variable and prompts calls for standardization of reporting of arbovirus occurrence. These findings support further risk emergence prediction, guide field surveillance efforts, and prompt further in-vivo studies to better define the ecological drivers of MAYV maintenance and potential for emergence.

Ornithonyssus bursa (Berlese, 1888), known as the tropical fowl mite, is a hematophagous mite of domestic and wild birds. This mite can bite humans accidentally, causing “gamasoidosis,” “avian-mite dermatitis,” or “bird-mite dermatitis” in tropical and subtropical regions of the world. In Brazil, O. bursa was previously recorded parasitizing birds of the orders Charadriiformes Huxley, 1867, Columbiformes Latham, 1790, Galliformes Temminck, 1820, Passeriformes Linnaeus, 1758, Strigiformes Wagler, 1830, and Tinamiformes Huxley, 1872. Here, we provide a new association of O. bursa with Harris’s hawk, Parabuteo unicinctus (Temminck, 1824) (Accipitriformes: Accipitridae) and the first record of this mite species in the Paraíba State, Brazil.

BackgroundArtificial light is ubiquitous in the built environment with many known or suspected impacts on birds. Birds flying at night are known to aggregate around artificial light and collide with illuminated objects, which may result from attraction and/or disorientation. In other contexts, birds are repelled by light-based deterrents, including lasers and spotlights. Artificial light can also change birds’ perceptions of habitat quality, resulting in selection or avoidance of illuminated areas. Studies documenting aggregation, deterrence, and habitat selection are typically considered separate literature bodies, but they actually study a common set of populations, interventions/exposures, and responses. Our systematic map provides a comprehensive, searchable database of evidence of the effects of artificial light on bird movement and distribution, increasing both the quantity and diversity of studies that are accessible for further comparison and synthesis. We identify and describe the evidence available for four secondary questions relevant to conservation or management: aggregation/mortality at structures with artificial lights, evidence that light attracts and/or disorients birds, light-based deterrent efficacy, and the influence of continuous illumination on habitat selection.MethodsUsing the principles of systematic reviews and methods published in an earlier protocol, we conducted an extensive and interdisciplinary literature search. We searched multidisciplinary citation indices as well as databases and websites specific to conservation, pest management, transportation, and energy. In our map, we included all studies reporting eligible populations (birds), interventions/exposures (artificial light), and outcomes (movement through space, behaviour preceding movement, or distribution). We evaluated the quantity of available evidence based on meta-data fields related to study context, population traits, light source characteristics, and outcome variables. We used these meta-data to identify relevant evidence for each secondary question and describe aspects of our secondary questions that may support reviews (evidence clusters) and others that require more research (knowledge gaps).Review findingsWe manually screened 26,208 articles and coded meta-data for 490 eligible studies in a searchable database, organizing the literature to facilitate future reviews and evidence-based management. Much of the evidence was concentrated in particular locations (Northern hemisphere), taxonomic orders (Passeriformes, Charadriiformes, and others), and light wavelengths (red and white). We identified 56 distinct response variables and organized them into 3 categories (behaviour, distribution, and avian community), showing the diversity in bird responses to light.ConclusionsOur database can be used to answer the secondary questions we identified and other questions about the effects of artificial light on bird movement and resulting changes to distribution. There may be sufficient evidence for a review of the weather and lunar conditions associated with collisions, which could help identify nights when reduction of artificial light is most important. Further experiments should investigate whether specific types of light can reduce collisions by increasing the detectability of structures with artificial lights. The efficacy of lasers as deterrents could be evaluated through systematic review, though more studies are needed for UV/violet lasers. To reduce the impacts of outdoor lighting on birds, research should investigate how spectral composition of white light influences bird attraction, orientation, and habitat selection.

The revealed prevalence of coronaviruses in wild bird populations in Poland was 4.15% and the main reservoirs were birds from orders Anseriformes and Charadriiformes, with a prevalence of 3.51% and 5.59%, respectively. Gammacoronaviruses were detected more often than deltacoronaviruses, with detection rates of 3.5% and 0.7%, respectively. Gammacoronaviruses were detected in birds belonging to six orders, including Anseriformes, Charadriiformes, Columbiformes, Galliformes, Gruiformes, and Passeriformes, indicating a relatively wide host range. Interestingly, this was the only coronavirus detected in Anseriformes (3.51%), while in Charadriiformes, the prevalence was 3.1%. The identified gammacoronaviruses belonged to the Igacovirus and Brangacovirus subgeneras. Most of these were igacoviruses and formed a common phylogenetic group with a Duck Coronavirus 2714 and two with an Avian Coronavirus/Avian Coronavirus9203, while the viruses from the pigeons formed a distinct “pigeon-like” group, not yet officially represented. The presence of deltacoronaviruses was detected in birds belonging to three orders, Charadriiformes, Galliformes, and Suliformes indicating a narrower host range. Most identified deltacoronaviruses belonged to the Buldecovirus subgenus, while only one belonged to Herdecovirus. Interestingly, the majority of buldecoviruses were identified in gulls, and they formed a distinct phylogenetic lineage not represented by any officially ratified virus species. Another separate group of buldecoviruses, also not represented by the official species, was formed by a virus identified in a common snipe. Only one identified buldecovirus (from common pheasant) formed a group with the ratified species Coronavirus HKU15. The results obtained indicate the high diversity of detected coronaviruses, and thus also the need to update their taxonomy (establishing new representative virus species). The serological studies performed revealed antibodies against an infectious bronchitis virus in the sera of white storks and mallards.

The Yellow-legged Buttonquail Turnix tanki is a species of the genus Turnix, which belongs to the order Charadriiformes. It is distributed across almost all of China. The International Union for Conservation of Nature has assessed the bird’s conservation status as ‘Least Concern (LC).’ We sequenced the complete mitogenome of T. tanki and examined its phylogenetic relationship with other charadriiformes species. The mitochondrial DNA is packaged in a compact 17,620 base pair circular molecule with A + T content of 57.90%. It contains 37 typical mitochondrial genes, including 13 protein-coding genes, two rRNAs and 22 tRNAs, and two non-coding regions. We reconstructed a phylogenetic tree based on mitogenome sequences of five Turnicidae species and one outgroup. Phylogenetic analysis indicated that T. tanki is a sister to T. suscitator.

BackgroundThe Scolopacidae family (Suborder Scolopaci, Charadriiformes) is composed of sandpipers and snipes; these birds are long-distance migrants that show great diversity in their behavior and habitat use. Cytogenetic studies in the Scolopacidae family show the highest diploid numbers for order Charadriiformes. This work analyzes for the first time the karyotype of Actitis macularius by classic cytogenetics and chromosome painting.ResultsThe species has a diploid number of 92, composed mostly of telocentric pairs. This high 2n is greater than the proposed 80 for the avian ancestral putative karyotype (a common feature among Scolopaci), suggesting that fission rearrangements have formed smaller macrochromosomes and microchromosomes. Fluorescence in situ hybridization using Burhinus oedicnemus whole chromosome probes confirmed the fissions in pairs 1, 2, 3, 4 and 6 of macrochromosomes.ConclusionComparative analysis with other species of Charadriiformes studied by chromosome painting together with the molecular phylogenies for the order allowed us to raise hypotheses about the chromosomal evolution in suborder Scolopaci. From this, we can establish a clear idea of how chromosomal evolution occurred in this suborder.

Helminths are an important component of biodiversity with over 24,000 species parasitising wild birds globally, with this figure on the rise given the growing interest in wildlife parasitology. The present study aimed to establish an updated baseline of the helminthological surveys on wild birds from Chile. Available publications were reviewed to build a parasite-host association checklist and also to discuss the state of knowledge regarding these parasites. A total of 92 publications were found between the years 1892 and 2019. Regarding helminth parasites, 174 taxa belonging to 3 phyla and 37 families were recorded, 114 taxa were identified at species level, with the rest remaining incompletely described. Also, 4 taxa corresponded to new genera and 16 to new at species for science. The most reported parasites were platyhelminthes (53.9%) followed by nematodes (36.2%) and acanthocephalans (9.2%). Sixty-five avian species from 19 orders have been recorded as hosts, with most of them having been studied only once (64.6%). Out of these, the order Charadriiformes had the highest number of publications (n=23). In the case of the avian species present in the country, 14.2% of native, 40% of endemic and 22.2% of exotic species have been recorded hosting helminths. Regarding heteroxenous parasites, only 2 species have had their life cycles elucidated. Among the methodologies used for parasitic identification, 48.9% of the studies used morphological tools, 5.4% used molecular tools and 4.3% used both tools. For that reason, there are evident gaps in the data concerning the hosts sampled, methodologies and issues related to the biology of parasites such as life cycles, among others. In this sense, the need for specialists and cooperative research becomes indispensable to improve our understanding of helminths.

Birds are important components of biodiversity and acts as an indicator of habitat quality, productivity and stability. This study aimed to document species richness and assess the temporal distribution pattern of globally threatened bird species in the Basanta Protected Forest (BPF), one of the largest corridor forests which connects Dudhwa National Park (India) with protected areas of western lowland Nepal. During study period of ten years from 2010 to 2019, a total of 381 bird species from 78 families of 19 orders were recorded. Order Passeriformes had the highest species richness (n=180) followed by order Accipitriformes and Charadriiformes. Among the families, the family Muscicapidae had the highest species richness (n=31), followed by Accipitridae and Anatidae. Majority of bird recorded were forest bird followed by wetland and farmland bird species. Fifteen globally threatened species like red-headed vulture (Sarcogyps calvus), white-rumped vulture (Gyps bengalensis), slender-billed vulture (Gyps tenuirostris), steppe eagle (Aquila nipalensis) and Egyptian vulture (Neophron percnopterus) were recorded in the BPF. Extensive avian survey in the BPF is important for further exploration of avian community along with its driving factors, which might play a crucial role in developing baseline information and implementing conservation implications.

We analysed standardised estimates of local occupancy probability of 13 species of native wading birds, terns and gulls (order Charadriiformes) derived from the New Zealand Ornithological Society’s national Atlas of Bird Distribution collated in 1969–1979 and 1999–2004. We show systematic patterns in changes with taxonomic level of endemism, breeding habitat (coastal or inland), and location (distance from the coast, road density, and degree of land development for agriculture and forestry). The main changes were decreases in endemic inland breeding species within their inland South Island breeding ranges, and increases in most coastal-breeding species and some inland-breeding species around much of the coast, especially near urban centres in the North Island. Our results are consistent with both intensive land use and predation contributing to widespread declines of inland-breeding species across inland South Island. Potential causes of occupancy changes around the coast are less clear, and we offer some suggestions.

The results of research on identification of bird species involved in collisions mainly with aircraft of the Aeroflot–Russian Airlines Public Joint-Stock Company are presented. Identification examination as a complex study includes DNA analysis, as well as examination of the macro- and microstructure of a group of feathers, a single feather, or a fragment of one. The bird strike location is established. The reasons and factors leading to the appearance of a species at the airfield are considered, and brief recommendations are given to minimize bird strikes at the airfield. During this period, 32 species of ten bird orders involved in strikes were identified. It was found that most collisions occurred with the orders Charadriiformes (mostly with gulls), Falconiformes, and Apodiformes. It is noted that more than 90% of collisions occur at the airport or in its vicinity; there are half again as many more strikes during taking off than during landing. The largest number of collisions takes place in spring and summer time and during daylight hours. The engine, nose cone, and fuselage mainly suffer from bird collisions.

Each May for over three decades, avian influenza A viruses (IAVs) have been isolated from shorebirds and gulls (order Charadriiformes) at Delaware Bay (DE Bay), USA, which is a critical stopover site for shorebirds on their spring migration to arctic breeding grounds. At DE Bay, most isolates have been recovered from ruddy turnstones (Arenaria interpres), but it is unknown if this species is involved in either the maintenance or movement of these viruses outside of this site. We collected and tested fecal samples from 2823 ruddy turnstones in Florida and Georgia in the southeastern United States during four winter/spring sample periods—2010, 2011, 2012, and 2013—and during the winters of 2014/2015 and 2015/2016. Twenty-five low pathogenicity IAVs were recovered representing five subtypes (H3N4, H3N8, H5N9, H6N1, and H12N2). Many of these subtypes matched those recovered at DE Bay during the previous year or that year’s migratory cycle, suggesting that IAVs present on these southern wintering areas represent a source of virus introduction to DE Bay via migrating ruddy turnstones. Analyses of all IAV gene segments of H5N9 and H6N1 viruses recovered from ruddy turnstones at DE Bay during May 2012 and from the southeast during the spring of 2012 revealed a high level of genetic relatedness at the nucleotide level, suggesting that migrating ruddy turnstones move IAVs from wintering grounds to the DE Bay ecosystem.

BackgroundAquatic waterfowl, particularly those in the order Anseriformes and Charadriiformes, are the ecological reservoir of avian influenza viruses (AIVs). Dabbling ducks play a recognized role in the maintenance and transmission of AIVs. Furthermore, the pathogenesis of highly pathogenic AIV (HPAIV) in dabbling ducks is well characterized. In contrast, the role of diving ducks in HPAIV maintenance and transmission remains unclear. In this study, the pathogenesis of a North American A/Goose/1/Guangdong/96-lineage clade 2.3.4.4 group A H5N2 HPAIV, A/Northern pintail/Washington/40964/2014, in diving sea ducks (surf scoters, Melanitta perspicillata) was characterized.ResultsIntrachoanal inoculation of surf scoters with A/Northern pintail/Washington/40964/2014 (H5N2) HPAIV induced mild transient clinical disease whilst concomitantly shedding high virus titers for up to 10 days post-inoculation (dpi), particularly from the oropharyngeal route. Virus shedding, albeit at low levels, continued to be detected up to 14 dpi. Two aged ducks that succumbed to HPAIV infection had pathological evidence for co-infection with duck enteritis virus, which was confirmed by molecular approaches. Abundant HPAIV antigen was observed in visceral and central nervous system organs and was associated with histopathological lesions.ConclusionsCollectively, surf scoters, are susceptible to HPAIV infection and excrete high titers of HPAIV from the respiratory and cloacal tracts whilst being asymptomatic. The susceptibility of diving sea ducks to H5 HPAIV highlights the need for additional research and surveillance to further understand the contribution of diving ducks to HPAIV ecology.

Shorebirds (part of the order Charadriiformes) have a global distribution and exhibit remarkable variation in ecological and behavioural traits that are pertinent to many core questions in the fields of evolutionary ecology and conservation biology. Shorebirds are also relatively convenient to study in the wild as they are ground nesting and often occupy open habitats that are tractable to monitor. Here we present a database documenting the reproductive ecology of 1,647 individually marked snowy plovers (Charadrius nivosus) monitored between 2006 and 2016 at Bahía de Ceuta (23°54N, 106°57W) – an important breeding site in north-western Mexico. The database encompasses various morphological, behavioural, and fitness-related traits of males and females along with spatial and temporal population dynamics. This open resource will serve as an important data repository for addressing overarching questions in avian ecology and wetland conservation during an era of big data and global collaborative science.

The order Charadriiformes comprises three major clades: Lari and Scolopaci as sister group to Charadrii. Until now, only three Charadriiformes species have been studied by chromosome painting: Larus argentatus (Lari), Burhinus oedicnemus and Vanellus chilensis (Charadrii). Hence, there is a lack of information concerning the third clade, Scolapaci. Based on this, and to gain a better understanding of karyotype evolution in the order Charadriiformes, we applied conventional and molecular cytogenetic approaches in a species belonging to clade Scolopaci - the wattled jacana (Jacana jacana) - using Gallus gallus and Zenaida auriculata chromosome-specific probes. Cross-species evaluation of J. jacana chromosomes shows extensive genomic reshuffling within macrochromosomes during evolution, with multiple fission and fusion events, although the diploid number remains at high level (2n=82). Interestingly, this species does not have the GGA7-8 fusion, which was found in two representatives of Charadrii clade, reinforcing the idea that this fusion may be exclusive to the Charadrii clade. In addition, it is shown that the chromosome evolution in Charadriiformes is complex and resulted in species with typical and atypical karyotypes. The karyotypic features of Scolopaci are very different from those of Charadrii and Lari, indicating that after divergence, each suborder has undergone different chromosome rearrangements.

Avian influenza (AI) viruses have been routinely isolated from a wide diversity of free-living avian species, representing numerous taxonomic orders. Birds in orders Anseriformes and Charadriiformes are considered the natural reservoirs for all AI viruses; it is from these orders that AI viruses have been most frequently isolated. Since first recognized in the late 1800s, AI viruses have been an important cause of disease in poultry and, occasionally, in non-gallinaceous birds and mammals. While AI viruses tend to be of low pathogenicity (LP) in wild birds, the 2014-2015 incursion of highly pathogenic avian influenza (HPAI) clade 2.3.4.4 H5Nx viruses into North America and the recent circulation of HPAI H5 viruses in European wild birds highlight the need for targeted, thorough, and continuous surveillance programs in the wild bird reservoir. Such programs are crucial to understanding the potential risk for the incursion of AI into human and domestic animal populations. The aim of this chapter is to provide general concepts and guidelines for the planning and implementation of surveillance plans for AI viruses in wild birds.

This paper reveals the complexes of structural signs of body feathers in Charadriiformes bird species that have a taxonomical value. The complexes of structural signs are united in a system of diagnostic signs, which is used to identify bird taxa by one body feather, a part of a feather, and/or feather fragments. It is noted that the successful definition of a taxon requires the use of signs within the system.

A new species, Cherevychnavis umanskae sp. nov., (Aves: Charadriiformes) from the late Miocene of Ukraine is described, and all known fossils of the suborder Charadrii from the Paleogene and Miocene are summarized. The combination of preserved characters allows us to assign the new species to the suborder Charadrii but its more exact systematic position remains uncertain. Morphologically, the new species is most similar to the extant Haematopus and Recurvirostra, and in terms of size to Haematopus, but it clearly differs from all extant genera of Charadrii. The current remains fill the temporal and spatial gaps in the fossil record of charadriiform birds; they constitute the first record of the Charadrii in eastern-most Europe, and add to our still insufficient knowledge of the late Miocene birds.

Anthropogenic impact on nesting waders and passerine birds in the Arctic in surroundings of the industrial complex Sabetta, Yamal Peninsula, Russia was studied. A lot of factors associated with human development may affect nesting birds. The human-subsidized predation is considered to be the most significant. Anthropogenic food sources are usually present in human-transformed habitats, as well as additional dens and perch sites. This leads to a higher press of predation. In Sabetta, there are specific conditions causing artificially-limited predation and human-induced disturbance. Finding a large number of nests in close proximity to industrial infrastructure we have suggested that waders (order Charadriiformes) and passerine (order Passeriformes) birds may be tolerant to an urbanized landscape. In the studied industrial habitat, they probably do not reduce the nesting density, thanks to particular advantages of such habitats (drainability and variety of shelters). To test this hypothesis, we performed an analysis of the relationship between the nesting density of the 8 most abundant species of waders and passerines in relation to the degree of habitat transformation. Statistical analysis was carried out using the GLM module of Statsoft Statistica 10. We found a positive relation between nesting density of the Ringed Plover (Charadrius hiaticula) and Snow bunting (Plectrophenax nivalis) and the degree of transformation. Habitat transformation did not significantly affect the White wagtail (Motacilla alba) and Red-throated pipit (Anthus cervinus). The Lapland longspur (Calcarius lapponicus) showed a clear decrease of the nest density in transformed habitats. Last but not least, the Little stint (Calidris minuta), Temminck’s stint (C. temminckii) and Red-necked phalarope (Phalaropus lobatus) completely ignored only artificial habitats, whereas in partially transformed habitats, their mean nesting density was similar to undisturbed natural areas.

The greatest diversity of influenza A virus (IAV) is found in wild aquatic birds of the orders Anseriformes and Charadriiformes. In these birds, IAV replication occurs mostly in the intestinal tract. Fecal, cloacal, and/or tracheal swabs are typically collected and tested by real‐time RT‐PCR (rRT‐PCR) and/or by virus isolation in embryonated chicken eggs in order to determine the presence of IAV. Virus isolation may impose bottlenecks that select variant populations that are different from those circulating in nature, and such bottlenecks may result in artifactual representation of subtype diversity and/or underrepresented mixed infections. The advent of next‐generation sequencing (NGS) technologies provides an opportunity to explore to what extent IAV subtype diversity is affected by virus isolation in eggs. In the present work, we evaluated the advantage of sequencing by NGS directly from swab material of IAV rRT‐PCR‐positive swabs collected during the 2013–14 surveillance season in Guatemala and compared to results from NGS after virus isolation. The results highlight the benefit of sequencing IAV genomes directly from swabs to better understand subtype diversity and detection of alternative amino acid motifs that could otherwise escape detection using traditional methods of virus isolation. In addition, NGS sequencing data from swabs revealed reduced presence of defective interfering particles compared to virus isolates. We propose an alternative workflow in which original swab samples positive for IAV by rRT‐PCR are first subjected to NGS before attempting viral isolation. This approach should speed the processing of samples and better capture natural IAV diversity.OPEN RESEARCH BADGES This article has earned an Open Data Badge for making publicly available the digitally‐shareable data necessary to reproduce the reported results. The data is available at https://doi.org/10.5061/dryad.3h2n106.