In the present study, the distribution of water content in the membrane of PEFC was analyzed by using a numerical simulation as well as understanding the behavior of internal moisture of PEFC. Eight parameters were selected for the simulation then 18 combinations of the parameters were allocated by design of experiments, thus the data obtained were analyzed by multiple regression analysis to understand the influence factor of operating conditions quantitatively. As a result, the influence of the operating parameters on the dryness of the membrane for the anode side and the cathode side of PEFC was quantitatively shown by using the method of the multiple regression analysis. Further it was found that the area where cerium carbonate ought to be coated for preventing the degradation without decreasing performance.