Cattle Database Research Articles

Annual incidence, prevalence and transmission characteristics of Streptococcus agalactiae in Danish dairy herds

Contagious mastitis pathogens continue to pose an economic threat to the dairy industry. An understanding of their frequency and transmission dynamics is central to evaluating the effectiveness of control programmes. The objectives of this study were twofold: (1) to estimate the annual herd-level incidence rates and apparent prevalences of Streptococcus agalactiae (S. agalactiae) in the population of Danish dairy cattle herds over a 10-year period from 2000 to 2009 inclusive and (2) to estimate the herd-level entry and exit rates (demographic parameters), the transmission parameter, β, and recovery rate for S. agalactiae infection.Data covering the specified period, on bacteriological culture of all bulk tank milk samples collected annually as part of the mandatory Danish S. agalactiae surveillance scheme, were extracted from the Danish Cattle Database and subsequently analysed. There was an increasing trend in both the incidence and prevalence of S. agalactiae over the study period. Per 100 herd-years the value of β was 54.1 (95% confidence interval [CI] 46.0–63.7); entry rate 0.3 (95% CI 0.2–0.4); infection-related exit rate 7.1 (95% CI 5.6–8.9); non-infection related exit rate 9.2 (95% CI 7.4–11.5) and recovery rate 40.0 (95% CI 36.8–43.5). This study demonstrates a need to tighten the current controls against S. agalactiae in order to lower its incidence.

Association between antibodies to Coxiella burnetii in bulk tank milk and perinatal mortality of Danish dairy calves

BackgroundCoxiella burnetii is a well-known cause of placentitis and subsequent abortion in ruminants, but there are no reports on the relationship with perinatal mortality. The study was performed to determine the influence of level and change of bulk tank milk (BTM) antibodies to C. burnetii on two outcomes associated with parturition in cattle: a) stillbirth; and b) stillbirth and neonatal mortality combined (perinatal death).MethodsTwenty-four Danish dairy herds were tested repeatedly for antibodies to C. burnetii in BTM using a commercial ELISA. Samples were collected monthly from July 2008 to July 2009. Information on the 2,362 calvings occurring in the study period was obtained from the Danish Cattle Database. Two multilevel logistic regression models were created for the two outcomes stillbirth and perinatal mortality. One model included the level of BTM antibodies in a specified period before or after the outcome had occurred. The other model included the change in antibodies over time. These predictors were included both at herd and animal level. Furthermore, all models included parity and breed.ResultsThe individual monthly BTM antibody levels were highly correlated within herds. Consequently, changes in BTM antibody levels were not found to be associated with neither risk of stillbirth nor the risk of perinatal mortality. However, the risk of stillborn calves and perinatal death was higher with high level of BTM antibodies 8 to 9 months after the incident, but not outside this period.ConclusionWe conclude that the level of antibodies to C. burnetii in BTM may be associated with perinatal mortality, but the association was not persistent and should be investigated further.

Welfare Assessments Based on Lifetime Health and Production Data in Danish Dairy Cows

The objective of this study was to describe how information about the whole lifetime of the cow can be used when defining nonhuman animal-based criteria of the welfare of animals on the farm. Often measured over a short period, disease occurrence provides information relevant for assessing the current welfare state of the herd. Arguably, however, if disease records are to be used as ethically relevant welfare indicators, it is also important to record disease occurrence over the individual animal's entire life span. Thus, it matters ethically whether the burden of an outbreak of disease or other condition affecting animal welfare is carried by a few individuals or is distributed more evenly. To illustrate this principle, the study obtained data on disease treatment records and production from 392,287 cows from the Danish Cattle Database. The average cow had lived for 5 years and produced more than 22,000 L of milk. The medium number of treatments a cow had received for any disease was 2, but 10% of the cows had received more than 8 treatments for a disease. The study concluded that lifetime description provides a measure of disease occurrence that gives added value of ethical relevance to single-point prevalence or short-term incidence.

The effect of grazing on cow mortality in Danish dairy herds

The effect of summer grazing in large Danish dairy herds and certain management characteristics of grazing were studied for their impact on dairy cow mortality. Mortality data (from the Danish Cattle Database) from 391 Danish dairy herds (>100 cows) were combined with information from a questionnaire survey of grazing procedures on these herds in 2008. In all, 131 of the herds were identified as summer grazing and 260 as zero-grazing herds. The mortality was affected by an interaction of summer grazing and milking system. The risk of a cow dying was reduced to 46% in a grazing compared to a zero-grazing herd having automatic milking system. In traditional milking system, mortality was reduced to 75% in grazing compared to zero-grazing herds. Within the grazing herds, the risk of mortality decreased with increasing number of hours on pasture during the season. Free access between barn and pasture was associated with increased cow mortality.

Genetic analysis of calf and heifer losses in Danish Holstein

Mortality in dairy cattle is not only relevant with regard to economic losses but also to animal health and welfare. Thus, the aim of this investigation was to explore the genetic background of postnatal mortality in calves and replacement heifers in different age groups until first calving in Danish Holsteins. Records of Danish Holstein heifer calves born in the years 1998 to 2007 were extracted from the Danish Cattle database (Danish Cattle, Skejby, Denmark). The following periods (P) were defined for analyses: P1=d 1 to 30, P2=d 31 to 180, P3=d 181 to 365, P4=d 366 until the day before first calving or a maximum age of 1,200 d if no calving was reported, and the full period P5=d 1 until the day before first calving or a maximum age of 1,200 d if no calving was reported. Records of animals slaughtered or exported within a defined period were set to missing for this and following periods, whereas their records were kept for preceding periods. After further data editing, more than 840,000 calves and heifers born in the years 1998 to 2007 were investigated. Mortality rates were 3.23, 2.66, 0.97, 1.92, and 9.36% for the defined periods P1 to P5, respectively. For the estimation of genetic parameters, linear and threshold sire models were applied. Effects accounted for were the random effects herd × year × season and sire as well as the fixed effects year × month, number of dam's parity (parities >5 were set to 5), calf size, and calving ease. In total, the pedigree consisted of 4,643 sires and 20,821 animals. Heritabilities for the linear model were low, ranging from 0.006 (P3) to 0.042 (P5). Heritabilities estimated by threshold models showed a wider range, from not significantly different from zero for periods with low frequencies to 0.082 for P1. The mortality rate until first calving was higher than the stillbirth rate. Genetic and phenotypic variation seemed to be sufficiently high to genetically improve the trait calf and heifer mortality. Hence, a routine genetic evaluation would be valuable for monitoring and for selecting fitter animals in the Danish Holstein cattle population.

Association between bulk-tank milk Salmonella antibody level and high calf mortality in Danish dairy herds

Salmonella enterica ssp. enterica Dublin is the most common Salmonella serotype found in the dairy sector in Denmark. Salmonella antibody level in bulk-tank milk (BTM), indicative of Salmonella Dublin infection in the herd, has been recorded regularly in all Danish dairy herds through a surveillance program since 2002. The objective of this study was to investigate whether high BTM Salmonella antibody level was associated with high calf mortality at herd level. Other risk factors for high calf mortality were also investigated: breed, production type (organic vs. conventional), number of animals purchased, herd size, and number of neighbor herds within a 4.9-km radius. Data from the Danish Cattle Database including the Salmonella surveillance program from September 2007 through August 2008 were used. Dairy herds with more than 20 cows were included (n=4,337). Because of a highly right-skewed distribution of calf mortality with many zero values, calf mortality had to be dichotomized for the analysis. Therefore, in this study, high calf mortality was defined as calf mortality of more than 6.5% for calves aged 1 to 180 d. A logistic analysis was performed to identify risk factors associated with the probability of a herd having high calf mortality. The following factors were significantly associated with high calf mortality: high BTM Salmonella antibody level, odds ratio (OR)=2.0 (95% confidence interval=1.6–2.4), organic production OR=1.4 (95% confidence interval=1.1–1.7) for organic versus conventional production, and breed. Purchase of 8 or more animals increased the OR of high calf mortality more than purchase of 1 to 7 animals, which again had a higher OR compared with purchase of 0 animals. Because only 14.3% of the population consisted of herds with high BTM Salmonella status, the estimated proportion of herds with high calf mortality could only be reduced from 38.7 to 36.5% by eradicating Salmonella from the Danish cattle population (i.e., a population attributable risk of 2.2%). This showed that although there is a strong association between BTM Salmonella status and calf mortality, the problem with high calf mortality will not be solved by eradicating Salmonella. All other things equal, a population with more Salmonella-infected herds would gain a larger reduction in calf mortality from a Salmonella control campaign. Nevertheless, individual herds with a high within-herd prevalence of Salmonella are likely to benefit, both economically and regarding animal welfare, from controlling pathogenic Salmonella types in cattle.

Database of cattle candidate genes and genetic markers for milk production and mastitis.

A cattle database of candidate genes and genetic markers for milk production and mastitis has been developed to provide an integrated research tool incorporating different types of information supporting a genomic approach to study lactation, udder development and health. The database contains 943 genes and genetic markers involved in mammary gland development and function, representing candidates for further functional studies. The candidate loci were drawn on a genetic map to reveal positional overlaps. For identification of candidate loci, data from seven different research approaches were exploited: (i) gene knockouts or transgenes in mice that result in specific phenotypes associated with mammary gland (143 loci); (ii) cattle QTL for milk production (344) and mastitis related traits (71); (iii) loci with sequence variations that show specific allele-phenotype interactions associated with milk production (24) or mastitis (10) in cattle; (iv) genes with expression profiles associated with milk production (207) or mastitis (107) in cattle or mouse; (v) cattle milk protein genes that exist in different genetic variants (9); (vi) miRNAs expressed in bovine mammary gland (32) and (vii) epigenetically regulated cattle genes associated with mammary gland function (1). Fourty-four genes found by multiple independent analyses were suggested as the most promising candidates and were further in silico analysed for expression levels in lactating mammary gland, genetic variability and top biological functions in functional networks. A miRNA target search for mammary gland expressed miRNAs identified 359 putative binding sites in 3′UTRs of candidate genes.

Factors affecting the risk of euthanasia for cows in Danish dairy herds

Information about the 7238 Danish dairy cows that died or were euthanased in April, May and June of 2008 was obtained from the Danish Cattle Database, and the herd-level factors...

Bovine renal lipofuscinosis: Prevalence, genetics and impact on milk production and weight at slaughter in Danish cattle

BackgroundBovine renal lipofuscinosis (BRL) is an incidental finding in cattle at slaughter. Condemnation of the kidneys as unfit for human consumption was until recently considered the only implication of BRL. Recent studies have indicated a negative influence on the health of affected animals. The present study investigated the prevalence, genetics and effect of BRL on milk yield and weight at slaughter.MethodsBRL status of slaughter cattle was recorded at four abattoirs during a 2-year-period. Data regarding breed, age, genetic descent, milk yield and weight at slaughter were extracted from the Danish Cattle Database. The prevalence of BRL was estimated stratified by breed and age-group. Furthermore, total milk yield, milk yield in last full lactation and weight at slaughter were compared for BRL-affected and non-affected Danish Holsteins and Danish Red cattle.Results433,759 bovines were slaughtered and 787 of these had BRL. BRL was mainly diagnosed in Danish Red, Danish Holstein and crossbreds. The age of BRL affected animals varied from 11 months to 13 years, but BRL was rarely diagnosed in cattle less than 2 years of age.The total lifelong energy corrected milk (ECM) yields were 3,136 and 4,083 kg higher for BRL affected Danish Red and Danish Holsteins, respectively. However, the median life span of affected animals was 4.9 months longer, and age-corrected total milk yield was 1,284 kg lower for BRL affected Danish Red cows. These cows produced 318 kg ECM less in their last full lactation. Weight at slaughter was not affected by BRL status.The cases occurred in patterns consistent with autosomal recessive inheritance and several family clusters of BRL were found. Analysis of segregation ratios demonstrated the expected ratio for Danish Red cattle, but not for Danish Holsteins.ConclusionThe study confirmed that BRL is a common finding in Danish Holsteins and Danish Red cattle at slaughter. The disorder is associated with increased total milk yield due to a longer production life. However, a reduced milk yield was detected in the end of the production life in Danish Red. The study supports that BRL is inherited autosomal recessively in the Danish Red breed and Danish Holsteins, but with incomplete penetrance of the genotype in Danish Holsteins.

Comparison between dairy cow disease incidence in data registered by farmers and in data from a disease-recording system based on veterinary reporting

Sweden has a national disease-recording system based on veterinary reporting. From this system, all cattle-disease records are transferred to the dairy industry cattle database (DDD) where they are used for several purposes including research and dairy-health statistics. Our objective was to evaluate the completeness of this data source by comparing it with disease data registered by dairy farmers. The proportion of veterinary-treated disease events was estimated, by diagnosis. Disease incidence in the DDD was compared, by diagnosis and age, with disease data registered by the farmers. Comparison was made, by diagnosis, for (i) all disease events and (ii) those reported as veterinary-treated. Disease events, defined as “observed deviations in health, from the normal” were recorded by the farmers during January, April, July and October 2004. For the diagnoses calving problems, peripartum disorders, puerperal paresis and retained placenta, incidence proportions (IP) with 95% confidence intervals (CIs) were estimated. For all other disease problems, incidence rates (IR) were used. In total, 177 farmers reported at least 1 month and 148 reported all 4 months. Fifty-four percent of all disease events in the farmers’ data were reported as veterinary-treated. For several of the most common diagnoses, the IRs and IPs for all events were significantly higher in farmers’ data than in the DDD. Examples are, in cows: clinical mastitis, cough, gastro-intestinal disorders and lameness in hoof and limb; and in young stock: cough and gastro-intestinal disorders. For veterinary-treated events only, significant differences with higher IR in the farmers’ data were found in young stock for sporadic cough and sporadic gastro-intestinal disorders. The diagnosis “other disorders” had significantly more events in the DDD than in farmers’ data, i.e. veterinarians tended to choose more unspecific diagnoses than the farmers. This result indicates that the true completeness is likely to be higher than our estimate. We conclude that for the time period studied there was differential under-reporting associated with the diagnosis, the age of the animal and whether the herd was served by a state-employed or private veterinarian.

Colostrum and Milk as Risk Factors for Infection with Mycobacterium avium subspecies paratuberculosis in Dairy Cattle

Mycobacterium avium ssp. paratuberculosis (MAP) infections cause major losses to the dairy industry. Transmission of MAP occurs primarily via feces and in utero, but MAP can also be excreted in colostrum and milk. The objective of this study was to determine whether colostrum and milk fed to calves are important risk factors for infection with MAP. A questionnaire was sent to 1,050 farms participating in the Danish control program on paratuberculosis in early 2007. Details on practices regarding colostrum and milk feeding between 1999 and 2006 were obtained from 808 (77%) herds. Nine vaccinated herds were excluded. Information on MAP antibody-ELISA results, date of birth, and herd of birth of 93,994 animals was obtained from the Danish Cattle Database. A 2-level logistic regression model was fitted with a dichotomized ELISA response, with outcome, age, source of colostrum, and milk as fixed effects, and herd as a random effect. Animals fed colostrum from multiple cows had an odds ratio of 1.24 of being ELISA positive compared with animals fed colostrum from their own dam only. Calves suckling with foster cows had an odds ratio of 2.01 of being ELISA positive compared with calves fed milk replacer. Feeding bulk tank milk and pooled milk from cows with high somatic cell counts did not increase the risk of being ELISA positive. Overall, the results of the study suggested that source of milk was not of great importance for the transmission of MAP, but colostrum should be fed only from the dam of that calf.

Euthanasia of Danish dairy cows evaluated in two questionnaire surveys

BackgroundMortality risk in Danish dairy cows has more than doubled since 1990 (from 2% in 1990 to 5% in 2005). Until now, registrations about dead cows in the Danish Cattle Database have not included information about whether the cow died unassisted or was euthanized.MethodsWe interviewed a random sample of 196 Danish dairy farmers that had reported a dead cow to the Danish Cattle Database in 2002 and 196 dairy farmers that had reported a dead cow in 2006. Our objectives were to evaluate the proportion of euthanized cows, changes in the behaviour of farmers regarding euthanasia of cows over the years and possible reasons for these changes.ResultsIt seems that the threshold for euthanasia of cows among farmers has changed. Farmers generally reported a lower threshold for euthanasia compared to 5–10 years ago.ConclusionThe threshold for euthanasia of cows has, according to the dairy farmers, become lower. This might have positive impacts on animal welfare as more seriously ill cows are euthanized in the herds and not put through a period of suffering associated with disease and treatment or transported to a slaughterhouse in poor condition.

A mixed methods inquiry into the validity of data

BackgroundResearch in herd health management solely using a quantitative approach may present major challenges to the interpretation of the results, because the humans involved may have responded to their observations based on previous experiences and own beliefs. This challenge can be met through increased awareness and dialogue between researchers and farmers or other stakeholders about the background for data collection related to management and changes in management. By integrating quantitative and qualitative research methods in a mixed methods research approach, the researchers will improve their understanding of this potential bias of the observed data and farms, which will enable them to obtain more useful results of quantitative analyses.Case descriptionAn example is used to illustrate the potentials of combining quantitative and qualitative approaches to herd health related data analyses. The example is based on two studies on bovine metritis. The first study was a quantitative observational study of risk factors for metritis in Danish dairy cows based on data from the Danish Cattle Database. The other study was a semi-structured interview study involving 20 practicing veterinarians with the aim to gain insight into veterinarians' decision making when collecting and processing data related to metritis.Discussion and EvaluationThe relations between risk factors and metritis in the first project supported the findings in several other quantitative observational studies; however, the herd incidence risk was highly skewed. There may be simple practical reasons for this, e.g. underreporting and differences in the veterinarians' decision making. Additionally, the interviews in the second project identified several problems with correctness and validity of data regarding the occurrence of metritis because of differences regarding case definitions and thresholds for treatments between veterinarians.ConclusionStudies where associations between specific herd health management routines and disease outcome variables are drawn based purely on quantitative observational studies may benefit greatly by adding a qualitative perspective to the quantitative approach as illustrated and discussed in this article. The combined approach requires, besides skills and interdisciplinary collaboration, also openness, reflection and scepticism from the involved scientists, but the benefits may be extended to various contexts both in advisory service and science.

Managerial and environmental determinants of clinical mastitis in Danish dairy herds

BackgroundSeveral management and environmental factors are known as contributory causes of clinical mastitis in dairy herd. The study objectives were to describe the structure of herd-specific mastitis management and environmental factors and to assess the relevance of these herd-specific indicators to mastitis incidence rate.MethodsDisease reports from the Danish Cattle Data Base and a management questionnaire from 2,146 herds in three Danish regions were analyzed to identify and characterize risk factors of clinical mastitis. A total of 94 (18 continuous and 76 discrete) management and production variables were screened in separate bivariate regression models. Variables associated with mastitis incidence rate at a p-value < 0.10 were examined with a factor analysis to assess the construct of data. Separately, a multivariable regression model was used to estimate the association of management variables with herd mastitis rate.ResultsThree latent factors (quality of labor, region of Denmark and claw trimming, and quality of outdoor holding area) were identified from 14 variables. Daily milk production per cow, claw disease, quality of labor and region of Denmark were found to be significantly associated with mastitis incidence rate. A common multiple regression analysis with backward and forward selection procedures indicated there were 9 herd-specific risk factors.ConclusionThough risk factors ascertained by farmer-completed surveys explained a small percentage of the among-herd variability in crude herd-specific mastitis rates, the study suggested that farmer attitudes toward mastitis and lameness treatment were important determinants for mastitis incidence rate. Our factor analysis identified one significant latent factor, which was related to labor quality on the farm.

Inherited Disorders in Danish Cattle

Department of Veterinary Pathobiology Faculty of Life Sciences University of Copenhagen Bulowsvej 17 DK-1870 Frederiksberg C Denmark Inherited disorders are of great concern in cattle breeding as the breeding systems and the extensive use of genetically related sires predispose to increased frequency of recessively inherited disease genes in the population and subsequently the occurrence of diseased animals. Inherited disorders may in this way contribute significantly to the extent of calf diseases and mortality as elite sires may produce hundreds of thousands of progeny. Furthermore, high numbers of defective animals may be reached due to international trade with semen, which links national cattle populations together genetically. Several inherited disorders have been recorded in Danish cattle, mainly in Danish Holsteins and the Danish Red Dairy breed. These two breeds are the first and third most common breeds in Denmark, which may partly explain this observation. The structure of the beef cattle industry in Denmark - with few purebred animals and many small herds - makes recognition of inherited disorders in beef cattle difficult. Sires used for breeding purposes in Denmark are labelled for specific inherited disorders if they are genetically related to known carriers or if they have been genotyped. The labelling system includes disorders such as complex vertebral malformation, bovine leukocyte adhesion deficiency, spinal muscular atrophy, and spinal dysmyelination. Animals may be labelled as non-carrier, confirmed carrier, likely carrier or possible carrier based on, for example, molecular genotyping, progeny examination or pedigree information. A complete list of sires that are carriers of an inherited disorder and have been used for breeding in Denmark is provided. The genotype of sons of heterozygous sires used for insemination was evaluated to determine if all carriers had been detected. The analyses demonstrated that labelling of sires based on examination of diseased progeny reported by breeders or veterinarians was insufficient to detect carriers. A targeted search for specific inherited disorders is therefore recommended in the future, i.e. through contact with owners of animals at high risk of developing disease. Such animals can be picked out based on breeding and pedigree information, which is available from the Danish Cattle Database. Molecular genotyping is an efficient way to distinguish between carriers and non-carriers, but this method is only applicable once the molecular basis of a disorder has been established.

Preventive strategies and risk factors for milk fever in Danish dairy herds: A questionnaire survey

Milk fever is a commonly recognized production disease in dairy cows around parturition. The aim of this questionnaire survey was therefore to investigate milk fever preventive strategies used in Danish dairy herds during 1998, to explore the reasons for choosing a specific strategy, and finally to evaluate possible risk factors for milk fever occurrences. A random sample of 230 milk producers (MP) was drawn from the Danish Cattle Database. A telephone interview (TI) was used to collect data. A sub-sample of 25% MPs was chosen by systematic random sampling and interviewed a second time (TI 2). Descriptive analysis of all answers was performed. The agreement between TI 1 and TI 2 was evaluated using Cohen's kappa coefficient and the overall intra-MP agreement. Risk factors (such as housing systems or use of milk fever preventive strategies) for differences in milk fever incidences between herds were evaluated using logistic regression. This investigation revealed that Danish MPs focused on a few well-described milk fever preventive principles and other management methods, such as reduced milking and management of body condition. There was no significant difference in risk of developing milk fever using different prevention strategies ( p = 0.80). Furthermore, the logistic regression did not indicate an association between reported milk fever cases and the assessments of this as a problem or not ( p = 0.09). Tie stalls increased the risk of milk fever compared to loose housing systems ( p = 0.019). There was a significant difference in risk of milk fever between parities. The overall milk fever incidence risk was 3.0%.

Loser cows in Danish dairy herds: Definition, prevalence and consequences

During the last few years, many Danish dairy farmers have expressed increasing concerns regarding a group of cows, which we have chosen to term ‘loser cows’. Until now, a loser cow has not been described scientifically. We defined a loser cow on the basis of a clinical examination of the cow. A total of 15,151 clinical examinations were made on 6,451 individual cows from 39 randomly selected, large Danish dairy herds with loose-housing systems using a clinical protocol. Scores for the clinical signs lameness, body condition, hock lesions, other cutaneous lesions, vaginal discharge, condition of hair coat and general condition were converted into a loser cow score. Cows with a loser cow score of 8 or more were classified as loser cows. The overall prevalence of loser cows was 2.15%, 4.50% and 2.98% during the first, second and third round of herd visits, respectively. The associations between the loser cow state and milk production, mortality, morbidity, culling and workload for the farmer were evaluated using data from herd visits and from the Danish Cattle Database and a number of different statistical techniques. It was concluded that the loser cow state has significant negative consequences for both the farmer and the cow. On average, loser cows yielded 0.61 to 2.24 kg energy corrected milk less per day than non-loser cows depending on parity. Hazard ratio for death or euthanasia was 5.69 for loser cows compared to non-loser cows. Incidence rate ratio for disease treatments was 0.69 for non-loser cows compared to loser cows. Loser cows were often culled in an ‘unfavourable’ way and generally caused extra workload for the farmer. A simplified version of the loser cow score was evaluated and is recommended for future research and use in practice.

Animal disease outbreak control : the use of crisis management tools

In this era of globalisation the effective control of animal disease outbreaks requires powerful crisis management tools. In the 1990s software packages for different sectors of the government and agricultural industry began to be developed. In 2004, as a special application for tracking the movement of animals and animal products, the European Union developed the Trade Control and Expert System (TRACES) on the basis of its predecessor, the ANImal MOvement (ANIMO) project. The nationwide use of the ANIMO system by the veterinary authorities in Germany marked the beginning of the development in 1993 of a computerised national animal disease reporting system--the TierSeuchenNachrichten (TSN)--using the ANIMO hardware and software components. In addition to TRACES and TSN the third pillar for the management of animal disease outbreaks and crises in Germany is the national cattle and swine database--called Herkunftssicherungs- und Informationssystem für Tiere. A high degree of standardisation is necessary when integrating the different solutions at all levels of government and with the private sector. In this paper, the authors describe the use of these tools on the basis of their experience and in relation to what we can do now and what we should opt for in the future.

Comparative mapping and structural analysis of a FOX gene cluster on bovine chromosome 18

FOX genes encode a family of transcription factors which play important roles during early development and in regulation of metabolic homeostasis in mammals. Some members of the gene family, including FOXC2, FOXF1, and FOXL1 genes comprise a gene cluster on particular regions of human and mouse chromosomes. In this paper, we report chromosomal localization and structure of bovine FOXC2, FOXF1 and FOXL1 gene cluster and comparative analysis of the gene cluster in cattle, human, and mouse, which were performed by a combination of in silico database searching and in vitro sequencing and mapping experiments. BLAST search of cattle database with cDNA sequences of human and mouse FOXC2, FOXF1 and FOXL1 genes identified several ESTs which represent cattle cDNAs of these genes. Radiation hybrid mapping of these cattle cDNAs revealed that the bovine FOXC2, FOXL1, and FOXF1 genes are localized on the proximal region of bovine chromosome 18 and form a gene cluster. A comparative map of the region including the FOX gene cluster between cattle and human indicated that the localization of these genes on cattle chromosome is in concordant with those in the corresponding human chromosome. Then, we identified a contig of BAC draft sequences containing genomic sequences of these genes by MEGABLAST search of a cattle genome database using the cattle cDNA sequences. Complete genomic sequences of these genes were determined by cloning and sequencing of a part of genomic region in which the nucleotide sequences could not be obtained from the published BAC draft sequences. A comparison of the nucleotide sequences of the cattle, human, and mouse FOX gene clusters showed highly conserved structure of the cluster in mammalian species and identified some potential regulatory regions which are conserved in mammalian species.

Genetic variation and heritability of the antibody response to Mycobacterium avium subspecies paratuberculosis in Danish Holstein cows.

The purpose of this study was to estimate the genetic variation and the heritability of the ability to establish an immune response by producing antibodies to Mycobacterium avium subsp. paratuberculosis. Antibody levels were determined using an ELISA and measuring optical density (OD) values from milk samples of 11,535 cows from 99 herds. The pedigree of the 11,535 cows and information about days in milk, parity, milk yield, and others were obtained from the Danish Cattle database. The statistical analyses were made using a bivariate mixed animal model. The bivariate model with daily milk yield and OD as dependent variables showed a significant heritability of the ability to produce Mycobacterium avium subsp. paratuberculosis antibodies of 0.102 (genetic variance=0.054) and a nonsignificant genetic correlation of -0.037 between daily milk yield and OD. When a sire model was used, the estimated heritability was 0.091. To evaluate whether intrauterine infection could be reflected in the OD, variation among 2715 dam-daughter or maternal sister groups was also estimated. Variation in this data was nonsignificant, possibly because only very few clinical cases or end-stage cows, i.e., heavy bacterial shedders may have been represented among the cows sampled. It does not appear that intrauterine transmission is of major importance in the transmission of paratuberculosis.