Molecular dynamics simulations of the interaction of an anionic micelle of 64 SDS molecules with carnosine and anserine (a substituted analogue) in their three-pole cationic form were performed. The formation of hydrogen bonds between the peptides and the micelle has been established. The H-bond lengths range from 0.184 to 0.198 nm. The H-binding sites in the peptides are the protonated amino group and the NH group in the protonated imidazole fragment, and in the case of carnosine, the uncharged NH group in the OCNH peptide fragment. The binding sites in the micelle are the anionic oxygen atoms located closer to the micelle surface. The ethereal oxygen atoms that bind the sulfo group to the surfactant hydrophobic tail do not show noticeable activity in the formation of hydrogen bonds. The average numbers and the lifetimes of the peptide - SDS and peptide - water H-bonds were determined. The differences in the orientations of equally charged three-pole ions of carnosine and anserine relative to the anionic micelle were discussed. For carnosine associated with the micelle, the ψ-dihedral angle in the alanine residue appears in two discrete zones due to the COO– group rotation. The two zones correspond to two peptide conformers differing in the about-turn of the CH2NH3+ fragment on the micelle surface. The steric correspondence of the peptides and micelle controls the process of H-bonding between them and leads to significant differences in the orientation of equally charged ions of the peptides on an anionic micelle.
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