Bioturbation Processes Research Articles

Mixed Signals: interpreting mixing patterns of different soil bioturbation processes through luminescence and numerical modelling

Abstract. Soil bioturbation plays a key role in soil functions such as carbon and nutrient cycling. Despite its importance, fundamental knowledge on how different organisms and processes impact the rates and patterns of soil mixing during bioturbation is lacking. However, this information is essential for understanding the effects of bioturbation in present-day soil functions and on long-term soil evolution. Luminescence, a light-sensitive mineral property, serves as a valuable tracer for long-term soil bioturbation over decadal to millennial timescales. The luminescence signal resets (bleaches) when a soil particle is exposed to daylight at the soil surface and accumulates when the particle is buried in the soil, acting as a proxy for subsurface residence times. In this study, we compiled three luminescence datasets of soil mixing by different biota and compared them to numerical simulations of bioturbation using the ChronoLorica soil-landscape evolution model. The goal was to understand how different mixing processes affect depth profiles of luminescence-based metrics, such as the modal age, width of the age distributions and fraction of the bleached particles. We focus on two main bioturbation processes: mounding (advective transport of soil material to the surface) and subsurface mixing (diffusive subsurface transport). Each process has a distinct effect on the luminescence metrics, which we summarized in a conceptual diagram to help with qualitative interpretation of luminescence-based depth profiles. A first attempt to derive quantitative information from luminescence datasets through model calibration showed promising results but also highlighted gaps in the data that must be addressed before accurate, quantitative estimates of bioturbation rates and processes are possible. The new numerical formulations of bioturbation, which are provided in an accompanying modelling tool, provide new possibilities for calibration and more accurate simulation of the processes in soil function and soil evolution models.

Optimizing power generation in sediment microbial fuel cells through multi-electrode configurations

Optimizing power generation in sediment microbial fuel cells through multi-electrode configurations

Multispecies macrozoobenthic seasonal bioturbation effect on sediment erodibility

Multispecies macrozoobenthic seasonal bioturbation effect on sediment erodibility

Berthierine/Chamosite ooids and associated phases in Devonian deposits of the Parnaíba Basin, Brazil: Genesis and diagenetic evolution

Berthierine/Chamosite ooids and associated phases in Devonian deposits of the Parnaíba Basin, Brazil: Genesis and diagenetic evolution

THE EFFECT OF COASTAL AND CHANNEL MANGROVES SEDIMENT ON BIOTURBATION DISTRIBUTION

Mangroves are a type of tropical tree that thrives and flourishes in harsh conditions where most vegetation struggles. Despite their resilience, mangrove ecosystems face significant threats from deforestation, pollution, and human activities. As an exceptionally efficient habitat for the capture and stabilization of sediment, the mangrove region is also supported by the bioturbation activity where organisms burrow and play an important role in the carbon and nutrient cycle while shaping soil geomorphology within the ecosystem. Many discoveries on the distribution of bioturbation have been carried out in coastal areas regarding grain size, soil density, and others. However, the difference in bioturbation activities on different physical attributes such as coastal, channels, and creeks areas has not yet been well addressed especially in Malaysia. Thus, this study proposes to elucidate the difference in bioturbation distribution between coastal and channel regions in the mangrove areas. The aim is to determine bioturbation distribution within coastal and channel regions by investigating the sediment characteristics and bioturbation frequencies along these two regions. The stratified random quadrat sampling method has been used for bioturbation frequencies, inhabitant species, and population richness. The sediment was characterized with a standard soil dry-sieving method and further analysed by laser diffraction method for fine particle distribution. In examining the effect of physical attribute influence on the bioturbation distribution, a two-way ANOVA assessment was carried out. This study has found that coastal and channel had different sediment distribution and the bioturbation frequencies were influenced by different inhabitants in both regions. Thus, the result of this study supports that coastal and channel regions have significant differences in the bioturbation process. The outcome of this study perhaps will increase awareness among the community members and their involvement in the enrichment and nurturing of ground areas, especially mangrove forests (SDG14).

Single-celled bioturbators: benthic foraminifera mediate oxygen penetration and prokaryotic diversity in intertidal sediment

Abstract. Bioturbation processes influence particulate (sediment reworking) and dissolved (bioirrigation) fluxes at the sediment–water interface. Recent works showed that benthic foraminifera largely contribute to sediment reworking in intertidal mudflats, yet their role in bioirrigation processes remains unknown. In a laboratory experiment, we showed that foraminifera motion behaviour increased the oxygen penetration depth and decreased the total organic content. Their activity in the top 5 mm of the sediment also affected prokaryotic community structure. Indeed, in bioturbated sediment, bacterial richness was reduced, and sulfate-reducing taxa abundance in deeper layers was also reduced, probably inhibited by the larger oxygen penetration depth. Since foraminifera can modify both particulate and dissolved fluxes, their role as bioturbators can no longer be neglected. They are further able to mediate the prokaryotic community, suggesting that they play a major role in the benthic ecosystem functioning and may be the first described single-celled eukaryotic ecosystem engineers.

Visual evaluation of soil structure in low‐intensity land use systems of steppe zone of Ukraine

AbstractThe network of natural forests and shelterbelts is a crucial element of agroforestry systems for the efficient and environmentally sustainable land use in Ukraine. From 2016 to 2021, we studied the quality of black soils structure under steppe wildland herbaceous vegetation, man‐made tree plantations ofRobinia pseudoacaciaL. andQuercus roburL., and native forest vegetation of ravines and floodplains in the steppe zone of Ukraine. According to the visual evaluation of soil structure (VESS) scores, the content of the agronomically valuable fraction (AVF), soil organic carbon (SOC) and earthworm casts, native forest soils (Chernozems and Phaeozems) had a significantly (p < .05) higher soil structural quality in 0–25 cm layer as compared with the Chernozems under the steppe vegetation and shelterbelt plantations. In the conditions of steppe landscapes, VESS methods were shown to provide efficient diagnostics to differentiate the black soil structural quality of low‐intensity land use systems, that is steppe wildlands, shelterbelts, native forests: VESS indicators significantly (p < .05) correlated with quantitative characteristics of soil structure. The most significant dependence was found between VESS parameters and earthworm casts content. The need to improve VESS method was demonstrated, that is to assign higher weight to the earthworm bioturbation process as one of the key indicators of soil structural quality.

Sand, wind, paleosols, war: Late Quaternary aeolian dynamics in the Selima Sand Sheet Region, Darb el Arba'in Desert, Southern Egypt

Sand, wind, paleosols, war: Late Quaternary aeolian dynamics in the Selima Sand Sheet Region, Darb el Arba'in Desert, Southern Egypt

Ediacaran-Cambrian bioturbation did not extensively oxygenate sediments in shallow marine ecosystems.

The radiation of bioturbation during the Ediacaran-Cambrian transition has long been hypothesized to have oxygenated sediments, triggering an expansion of the habitable benthic zone and promoting increased infaunal tiering in early Paleozoic benthic communities. However, the effects of bioturbation on sediment oxygen are underexplored with respect to the importance of biomixing and bioirrigation, two bioturbation processes which can have opposite effects on sediment redox chemistry. We categorized trace fossils from the Ediacaran and Terreneuvian as biomixing or bioirrigation fossils and integrated sedimentological proxies for bioturbation intensity with biogeochemical modeling to simulate oxygen penetration depths through the Ediacaran-Cambrian transition. Ultimately, we find that despite dramatic increases in ichnodiversity in the Terreneuvian, biomixing remains the dominant bioturbation behavior, and in contrast to traditional assumptions, Ediacaran-Cambrian bioturbation was unlikely to have resulted in extensive oxygenation of shallow marine sediments globally.

Outcomes of feeding activity of the sea cucumber Holothuria tubulosa on quantity, biochemical composition, and nutritional quality of sedimentary organic matter

IntroductionHolothuria tubulosa is one of the most common sea cucumbers in the Mediterranean Sea, generally associated with organically enriched coastal sediments and seagrass beds. As a deposit-feeder, it is responsible for strong bioturbation processes and plays a putative key role in sedimentary carbon cycling and benthic trophodynamics. With the aim of exploring the potential use of holothuroids as a tool for remediating eutrophicated sediments, we investigated the effects of H. tubulosa on sedimentary organic matter quantity, biochemical composition, and nutritional quality.MethodsHolothuroids and associated samples of ambient sediments were collected in two sites located in the Central-Western Mediterranean Sea (Sardinia, Italy) and characterized by different trophic status backgrounds: the site of Oristano characterized by sandy-muddy sediments and the presence of mariculture plants (ranked as meso-eutrophic) and the site of Teulada characterized by sandy sediments and Posidonia oceanica meadows (ranked as oligo-mesotrophic). We compared the biochemical composition (proteins, carbohydrates, lipids) of ambient sediment vs sea cucumbers feces and the sedimentary protein content vs protein content in the sediments retrieved in different gut sections (esophagus, mid gut, end gut) of the holothuroid.ResultsOur results reveal that holothuroids feeding on meso-eutrophic sediments can increase protein (1.5 times) and lipid (1.3 times) content through their defecation, thus making these substrates a more labile food source for other benthic organisms. We report here that H. tubulosa feeding on meso-eutrophic sediment is most likely able to actively select particles rich in labile organic matter with buccal tentacles, as revealed by the protein content in the esophagus that is up to 2-folds higher than that in the source sediment. According to the inverse relationship between assimilation rates and availability of organic substrates and the optimal foraging theory, H. tubulosa feeding on oligo-mesotrophic sediments showed potential assimilation of proteins ca. 25% higher than that of specimens feeding on meso-eutrophic sediments.DiscussionOur results reveal that H. tubulosa feeding on meso-eutrophic sediments can profoundly influence the benthic trophic status, specifically modifying the biochemical composition and nutritional quality of organic matter, thus paving the way to its possible use in bioremediation actions of eutrophicated sediments and in Integrated Multi-Trophic Aquaculture systems.

Changes in macrofauna bioturbation during repeated heatwaves mediate changes in biogeochemical cycling of nutrients

The increasing frequency and intensity of marine heatwaves (MHWs) observed worldwide entails changes in the structure and functioning of ecological communities. While severe and extreme heatwaves often have more destructive effects, the more subtle effects of moderate and strong heatwaves may nevertheless affect ecosystem functioning through complex, context-dependent linkages between different processes. Here we conducted a laboratory experiment to study the effects of repeated short-term, strong MHWs on macrofauna bioturbation and associated solute fluxes as a measure of ecosystem functioning using natural soft-sediment communities from the Baltic Sea. Our results showed changes in both bioturbation and biogeochemical cycling of nutrients following short-term, strong heatwaves, which seemed to contribute to an enhanced degradation of organic matter in the seafloor and an enhanced exchange of solutes across the sediment-water interface as well as increased sediment oxygen consumption. Following changes in these processes, the relative contribution of macrofauna and the environmental context to ecosystem functioning was altered. Our results highlight the potential of even shorter-term, strong MHWs of having system-wide impacts due to changes in the mechanistic process of bioturbation underpinning the biogeochemical cycling of nutrients. This study also highlights the need to measure a wide range of variables for a comprehensive understanding of the changes in functioning under disturbances, such as MHWs.

Micro‐computed tomography scanning approaches to quantify, parameterize and visualize bioturbation activity in clogged streambeds: A proof of concept

AbstractFine particle clogging and faunal bioturbation are two key processes co‐occurring in the hyporheic zone that potentially affect hyporheic exchange through modifications in the sediment structure of streambeds. Clogging results from excessive fine sediment infiltration and deposition in rivers, and it is known to decrease matrix porosity and potentially reduce permeability. Faunal bioturbation activity may compensate for the negative effect of clogging by reworking the sediment, increasing porosity, and preventing further infiltration of fines. Although both processes of clogging and bioturbation have received significant attention in the literature separately, their combined effects on streambed sediment structure are not well understood, mostly due to the lack of a standard methodology for their assessment. Here, we illustrate a novel methodology using X‐ray computed tomography (CT), as proof of concept, to investigate how, together, clogging and bioturbation affect streambed porosity in a controlled flow‐through flume. By visualising gallery formations of an upward conveyor macroinvertebrate; Lumbriculus variegatus as a model species, we quantified bioturbation activity in a clogged streambed, focusing on orientation, depth, and volume at downwelling and upwelling areas of the flume. Gallery creation increased the porosity of the streambed sediment, suggesting a potential improvement in permeability and a possible offset of clogging effects. We illustrate the promising use of X‐ray CT as a tool to assess bioturbation in clogged streambeds, and the potential role of bioturbation activity supporting hyporheic exchange processes in streambeds, warranting further studies to understand the extent of bioturbation impacts in natural systems.

Bioturbation supplying young carbon into West Antarctic continental margin sediment

Bioturbation supplying young carbon into West Antarctic continental margin sediment

Microplastics cause neurotoxicity and decline of enzymatic activities in important bioturbator Hediste diversicolor

Microplastics cause neurotoxicity and decline of enzymatic activities in important bioturbator Hediste diversicolor

Reliability of mangrove radiocarbon chronologies: A case study from Mahé, Seychelles

Mangrove sediments are valuable archives of paleoenvironmental and relative sea-level changes. The most widely applied method to obtaining chronologies of past changes in mangrove sediments is radiocarbon dating, because mangroves produce large amounts of organic matter in situ. However, there are many challenges to obtaining reliable radiocarbon chronologies because bioturbation processes from roots and crabs can rework mangrove sediments, resulting in ages that are not in stratigraphic order. Previous studies have suggested that methods that isolate specific sediment size fractions may yield ages closer to the age of the paleo depositional surface by removing younger carbon contamination from fine roots. This study examines which sample types are more likely to yield reliable radiocarbon ages using shallow cores from a mangrove environment on Mahé, Seychelles, in the Indian Ocean. We compare radiocarbon ages from bulk sediment, sieved organic concentrates and above-ground macrofossils collected from the same stratigraphic depths. Bulk sediment and organic concentrate ages are comparable, which suggests that methods that separate out different size fractions do not sample different carbon sources in Seychelles mangrove cores. Identifiable above-ground macrofossils are rare in Seychelles mangrove cores, but yield older radiocarbon ages than comparable bulk sediment or organic concentrate ages. We suggest that in Seychelles, limited accommodation space over the late-Holocene, determined by relatively stable relative sea levels, has resulted in poor preservation of above-ground macrofossils for radiocarbon dating due to low rates of burial and sediment accretion. Low accretion rates have likely resulted in a mangrove sediment sequence that is highly bioturbated and degraded, meaning both bulk sediment and organic concentrate samples are impacted by contamination from younger roots. We argue that the availability of accommodation space and sediment composition controls the reliability of mangrove radiocarbon chronologies, which has implications for sample choice and site selection.

Inter-specific and inter-individual trait variability matter in surface sediment reworking rates of intertidal benthic foraminifera

Although benthic foraminifera are an important component of meiofauna and contribute to carbonate production and carbon/nitrogen cycles, their role in bioturbation processes remains poorly known. Five dominant intertidal benthic foraminiferal species were recently classified into functional bioturbator groups according to their sediment reworking mode and intensity. Our study aimed at identifying potential drivers (i.e. size and/or travelled distance) of species-specific surface sediment reworking rate. The travelled distance and surface sediment reworking rate of Haynesina germanica, Cribroelphidium williamsoni, Ammonia tepida, Quinqueloculina seminulum and Miliammina fusca were assessed through image analysis. Our results show that the surface sediment reworking performed by these species is not size-dependent, but dependent on their motility traits through interspecific differences in the travelled distance. Smaller species (i.e. Quinqueloculina seminulum and Haynesina germanica) contributed more to surface sediment reworking than larger ones (i.e. Ammonia tepida, Cribroelphidium williamsoni and Miliammina fusca). These observations stress the critical role of motion behaviour in surface sediment reworking processes by intertidal foraminifera. Finally, we stress that the high inter-individual variability observed in conspecific motion behaviour may be important to decipher the role of foraminifera in sediment bioturbation. Noticeably, the species characterized by a strong inter-individual variability are also the species that have the highest surface sediment reworking rates. This last observation may inform on the species-specific phenotypic plasticity and, therefore, the potential for the functional role of these species to be maintained in their natural environment. This is particularly relevant in an era of global change where ecosystem balance is increasingly threatened by various stressors such as heat-waves, ocean acidification and pollution.

Benthic estuarine communities' contribution to bioturbation under the experimental effect of marine heatwaves

Marine heatwaves are increasing worldwide, with several negative impacts on biological communities and ecosystems. This 24-day study tested heatwaves' effect with distinct duration and recovery periods on benthic estuarine communities' diversity and contribution to ecosystem functioning experimentally. The communities were obtained from a temperate estuary, usually subjected to high daily thermal amplitudes. Our goal was to understand the communities' response to the thermal change, including the community descriptors and behavioural changes expected during heat extremes. We measured community composition and structural changes and the bioturbation process and nutrient release as ecosystem functioning measurements. Overall, our findings highlight the potential tolerance of studied estuarine species to the temperature ranges tested in the study, as community composition and structure were similar, independently of the warming effect. We detected a slight trend for bioturbation and nutrient release increase in the communities under warming, yet these responses were not consistent with the heatwaves exposure duration. Overall, we conclude on the complexity of estuarine communities’ contribution to functioning under warming, and the importance of scalable experiments with benthic organisms' responses to climate variability, accommodating longer time scales and replication. Such an approach would set more efficient expectations towards climate change mitigation or adaptation in temperate estuarine ecosystems.

Unmixing deep-sea paleoclimate records: A study on bioturbation effects through convolution and deconvolution

Unmixing deep-sea paleoclimate records: A study on bioturbation effects through convolution and deconvolution

Influence of Bioturbation on Hyporheic Exchange in Streams: Conceptual Model and Insights From Laboratory Experiments

AbstractBioturbation occurs in streambeds by the action of a range of faunal species, but little is known about how it could modify the hyporheic exchange in streams. Previous experimental work investigating the effects of sediment‐biota interaction on exchange across the sediment‐water interface has been largely conducted in small mesocosms or infiltration columns that do not represent the lotic environment adequately. Therefore, the experimental findings from these studies may not be transferable to flowing water environments (e.g., streams). In this work, we first present a conceptual model demonstrating the causal pathways through which the sediment reworking and burrow ventilation processes (together referred to as bioturbation) could potentially modify the hyporheic flow regime. Next, to study the role of activities of faunal organisms in lotic environments and test some of the arguments presented in the model, laboratory experiments are conducted in re‐circulating flumes. The experiments involved investigating the modification of dune‐induced hyporheic flow due to the activities of a model bioturbating organism, Lumbriculus variegatus, following a control (without organisms) and treatment (with organisms) based experimental design. The sediment reworking activities such as surficial deposition of fecal pellets and burrowing by L. variegatus caused significantly higher hyporheic flux, longer mean residence times, and deeper solute penetration in the treatment flumes relative to the control flumes. We advocate that more intensive laboratory experiments and field investigations must be conducted to test the propositions put forward in the conceptual model and advance our understanding of the role of bioturbation process in fluvial ecosystems.

Impact of climate change on sedimentation processes in the eastern Gulf of Finland during the Middle to Late Holocene

This paper presents the results of high‐resolution sedimentological analyses of sediment cores from the eastern Gulf of Finland (Baltic Sea). Sampling sites in the periphery of sedimentary basins were selected on the basis of acoustic profiling analyses. The research allowed tracing of the transition from the freshwater Ancylus Lake to the Littorina Sea. A specific transitional layer of ‘blue clays’, indicating the first stage of brackish water inflow into the Gulf of Finland, was dated to 9.1 ka BP. The date of first appearance of Littorina silty clay sedimentation was as follows: from 8.0 ka BP near Gogland Island, from 7.0 ka BP near Moshchny Island and from 5.9 ka BP near the Berezovye Islands. Holocene cycles of hypoxia, associated with periods of warming, were identified and cycles of ‘warming – transgression – anoxic conditions’ and ‘cooling – regression – oxygen‐rich conditions’ were revealed. During the first stage of Littorina transgression (8.0–7.0 ka BP), the near‐bottom environment in the deepest sedimentary basin of the eastern Gulf of Finland was characterized by oxygen deficiency. In contrast, 7.0–6.0 ka BP was dominated by oxygen‐rich conditions and active processes of bioturbation. Anoxic conditions occurred again from 6.0–4.8 ka BP (Holocene Climatic Optimum), resulting in the accumulation of undisturbed silty clays with subhorizontal lamination. The interval from 4.8–2.0 ka was then characterized by oxygen‐rich near‐bottom conditions favourable for benthic organisms. The grain‐size distributions throughout the sediment cores from the easternmost sedimentary basins suggest a relative lowering of the sea level from 3.5–1.8 ka and a rise after 1.8 ka BP.