Attachment Of Side Chains Research Articles

Phosphoramitoids-A submonomer approach to sequence defined N-substituted phosphoramidate polymers.

There is a growing interest in new methods to generate bio-inspired, chemically diverse, sequence-defined synthetic polymers. Solid-phase submonomer approaches offer facile access to these types of materials, since they take advantage of readily available synthons. Submonomer approaches to date have been applied to peptidomimetics with oligo-amide backbones. Here we extend the approach to a phosphorous-containing backbone, where N-substituted phosphoramidate oligomers are constructed from a set of amine submonomers, diphenyl H-phosphonate, and cyclohexane diol. The key chemical steps in chain elongation are a chain extension reaction based on H-phosphonate (P III) chemistry, and a side chain attachment step based on the Atherton-Todd reaction. Cheap, stable chemical reagents are used without heating, all reaction times are 30 minutes or less and open to air, and no main-chain protecting groups are required. Phosphoramitoid tetramers and pentamers displaying a variety of side chain functionalities were synthesized by a three-step solid-phase submonomer method, typically with >85% crude purities.

Computer‐aided solvent selection and design for the efficient extraction of a pharmaceutical molecule

AbstractWe have employed a computer‐aided approach to select and design task‐specific organic solvents for the liquid‐liquid extraction of ephedrine from its aqueous solution. We have identified three solvent performance indicators (SPIs) as the shortlisting criteria for solvents with desirable properties: high ephedrine solubility; low solvent loss; and high partition coefficient. Other properties that were considered include octanol‐water partition coefficient and toxicity, which give a measure of the safety/health/environmental (SHE) impacts, and liquid viscosity, which is an important process design parameter. We have first analyzed the trends in these SPIs for a range of common organic solvents. Toluene (currently employed for the extraction of R‐phenylacetylcarbinol, the precursor to ephedrine) has low solvent loss but relatively poor values of the other SPIs for ephedrine extraction, though with a relatively benign SHE impact. We are unable to identify a solvent (from the list of common organic solvents) that satisfies all the shortlisting criteria for use in the pharmaceutical industry and this provided the motivation for the design of task‐specific solvents. We have designed organic solvents (acyclic aliphatic, aromatic with one side chain attachment, and aromatic with two side chain attachments) with superior values of SPIs than the reference solvent, toluene. We have employed limiting values on the melting and boiling points to ensure the designed solvents are liquids at the operating conditions. Designed aliphatic compounds contain the chloro‐group(s), whereas there are aromatic solvents without the chloro‐groups with better SPIs than toluene. Designed solvents without chloro‐groups may be considered as the starting point for further screening experiments.

Absolute Configurations of Naturally Occurring [5]- and [3]-Ladderanoic Acids: Isolation, Chiroptical Spectroscopy, and Crystallography.

We have isolated mixtures of [5]- and [3]-ladderanoic acids 1a and 2a from the biomass of an anammox bioreactor and have separated the acids and their phenacyl esters for the first time by HPLC. The absolute configurations of the naturally occurring acids and their phenacyl esters are assigned as R at the site of side-chain attachment by comparison of experimental specific rotations with corresponding values predicted using quantum chemical (QC) methods. The absolute configurations for 1a and 2a were independently verified by comparison of experimental Raman optical activity spectra with corresponding spectra predicted using QC methods. The configurational assignments of 1a and 2a and of the phenacyl ester of 1a were also confirmed by X-ray crystallography.

The molecular mechanism of N-acetylglucosamine side-chain attachment to the Lancefield group A carbohydrate in Streptococcus pyogenes

In many Lactobacillales species (i.e. lactic acid bacteria), peptidoglycan is decorated by polyrhamnose polysaccharides that are critical for cell envelope integrity and cell shape and also represent key antigenic determinants. Despite the biological importance of these polysaccharides, their biosynthetic pathways have received limited attention. The important human pathogen, Streptococcus pyogenes, synthesizes a key antigenic surface polymer, the Lancefield group A carbohydrate (GAC). GAC is covalently attached to peptidoglycan and consists of a polyrhamnose polymer, with N-acetylglucosamine (GlcNAc) side chains, which is an essential virulence determinant. The molecular details of the mechanism of polyrhamnose modification with GlcNAc are currently unknown. In this report, using molecular genetics, analytical chemistry, and mass spectrometry analysis, we demonstrated that GAC biosynthesis requires two distinct undecaprenol-linked GlcNAc-lipid intermediates: GlcNAc-pyrophosphoryl-undecaprenol (GlcNAc-P-P-Und) produced by the GlcNAc-phosphate transferase GacO and GlcNAc-phosphate-undecaprenol (GlcNAc-P-Und) produced by the glycosyltransferase GacI. Further investigations revealed that the GAC polyrhamnose backbone is assembled on GlcNAc-P-P-Und. Our results also suggested that a GT-C glycosyltransferase, GacL, transfers GlcNAc from GlcNAc-P-Und to polyrhamnose. Moreover, GacJ, a small membrane-associated protein, formed a complex with GacI and significantly stimulated its catalytic activity. Of note, we observed that GacI homologs perform a similar function in Streptococcus agalactiae and Enterococcus faecalis In conclusion, the elucidation of GAC biosynthesis in S. pyogenes reported here enhances our understanding of how other Gram-positive bacteria produce essential components of their cell wall.

Aqueous Processing for Printed Organic Electronics: Conjugated Polymers with Multistage Cleavable Side Chains.

The ability to process conjugated polymers via aqueous solution is highly advantageous for reducing the costs and environmental hazards of large scale roll-to-roll processing of organic electronics. However, maintaining competitive electronic properties while achieving aqueous solubility is difficult for several reasons: (1) Materials with polar functional groups that provide aqueous solubility can be difficult to purify and characterize, (2) many traditional coupling and polymerization reactions cannot be performed in aqueous solution, and (3) ionic groups, though useful for obtaining aqueous solubility, can lead to a loss of solid-state order, as well as a screening of any applied bias. As an alternative, we report a multistage cleavable side chain method that combines desirable aqueous processing attributes without sacrificing semiconducting capabilities. Through the attachment of cleavable side chains, conjugated polymers have for the first time been synthesized, characterized, and purified in organic solvents, converted to a water-soluble form for aqueous processing, and brought through a final treatment to cleave the polymer side chains and leave behind the desired electronic material as a solvent-resistant film. Specifically, we demonstrate an organic soluble polythiophene that is converted to an aqueous soluble polyelectrolyte via hydrolysis. After blade coating from an aqueous solution, UV irradiation is used to cleave the polymer’s side chains, resulting in a solvent-resistant, electroactive polymer thin film. In application, this process results in aqueous printed materials with utility for solid-state charge transport in organic field effect transistors (OFETs), along with red to colorless electrochromism in ionic media for color changing displays, demonstrating its potential as a universal method for aqueous printing in organic electronics.

Cationic Side-Chain Attachment to Poly(Phenylene Oxide) Backbones for Chemically Stable and Conductive Anion Exchange Membranes

A series of chemically stable and ionically conductive side-chain anion exchange membranes (AEMs) based on poly(2,6-dimethyl-1,4-phenylene oxide) (PPO) backbones and alkyltrimethylammonium cations are reported in this work. Two alkyltrimethylammonium groups with n-propyl (C3) and n-pentyl (C5) alkyl chains were tethered onto PPO backbones through secondary amine moieties, resulting in two side-chain AEMs, that is, NC3Q-PPO and NC5Q-PPO and NC5 Q-PPO. In comparison to benzylic QA groups (e.g., benzyltrimethylammonium cations in quarternized PPO (QPPO) and benzylalkyldimethylammonium cations in comb-shaped PPOs (i.e., QC3-PPO and QC6-PPO)), the alkyltrimethylammonium cations of the side-chain PPOs, which do not possess highly reactive benzylic protons adjacent to both the aromatic ring and the cation, showed superior alkaline stability. After 30 days of aging in 1 mol/L NaOH solution at 80 °C, the retention of the conductivities of NC3Q-PPO (IEC = 2.17 mmol/g), NC5Q-PPO-40 (IEC = 2.03 mmol/g), and NC5Q-PPO-...

Charge Separation Mechanisms in Ordered Films of Self-Assembled Donor-Acceptor Dyad Ribbons.

Orthogonal attachment of polar and nonpolar side-chains to a zinc porphyrin-perylenediimide dyad (ZnP-PDI, 1a) is shown to result in self-assembly of ordered supramolecular ribbons in which the ZnP and PDI molecules form segregated π-stacked columns. Following photoexcitation of the ordered ribbons, ZnP+•-PDI-• radical ion pairs form in <200 fs and subsequently produce a 30 ± 3% yield of free charge carriers that live for about 100 μs. Elongating the side chains on ZnP and PDI in 1b enhances the order of the films, but does not result in an increase in free charge carrier yield. In addition, this yield is independent of temperature, free energy of reaction, and the ZnP-PDI distance in the covalent dyad. These results suggest that the free charge carrier yield in this system is not limited by a bound charge transfer (CT) state or promoted by a vibronically hot CT state. Instead, it is likely that π-stacking of the segregated donors and acceptors within the ribbons results in delocalization of the charges following photoexcitation, allowing them to overcome Coulombic attraction and generate free charge carriers.

Jeffamine® based polymers as highly conductive polymer electrolytes and cathode binder materials for battery application

Abstract We report a simple synthesis route towards a new type of comb polymer material based on polyether amines oligomer side chains (i.e., Jeffamine® compounds) and a poly(ethylene-alt-maleic anhydride) backbone. Reaction proceeds by imide ring formation through the NH2 group allowing for attachment of side chains. By taking advantage of the high configurational freedoms and flexibility of propylene oxide/ethylene oxide units (PO/EO) in Jeffamine® compounds, novel polymer matrices were obtained with good elastomeric properties. Fully amorphous solid polymer electrolytes (SPEs) based on lithium bis(trifluoromethanesulfonyl)imide (LiTFSI) and Jeffamine®-based polymer matrices show low glass transition temperatures around −40 °C, high ionic conductivities and good electrochemical stabilities. The ionic conductivities of Jeffamine-based SPEs (5.3 × 10−4 S cm−1 at 70 °C and 4.5 × 10−5 S cm−1 at room temperature) are higher than those of the conventional SPEs comprising of LiTFSI and linear poly(ethylene oxide) (PEO), due to the amorphous nature and the high concentration of mobile end-groups of the Jeffamine-based polymer matrices rather than the semi-crystalline PEO The feasibility of Jeffamine-based compounds in lithium metal batteries is further demonstrated by the implementation of Jeffamine®-based polymer as a binder for cathode materials, and the stable cycling of Li|SPE|LiFePO4 and Li|SPE|S cells using Jeffamine-based SPEs.

Synthesis and energy transfer in original poly(3-alkylthiophene)-g-poly(fluorene) toothbrush copolymers

Conjugated tootbrush copolymers are prepared by connecting end-capped poly(9,9’-dioctylfluorene) (PF) side-chains (PF) to a poly(3-alkylthiophene) (P3AT) backbone via the CuAAC reaction. The ratio of grafted/nongrafted segment is varied. The influence of the covalent attachment of sidechains to the backbone on the self-assembly is studied by UV–vis spectroscopy. By excitation of the PF side-chains energy transfer to the P3HT backbone is studied.

Biological Activity of Brassinosteroids – Direct Comparison of Known and New Analogs in planta

A systematic investigation of structural modifications of brassinosteroids is presented. We describe in detail their synthetic preparation, which includes significant improvements of previously reported protocols as well as access to new analogs with functional modifications of the steroid skeleton and of the C(17)‐attached side chain. We report the biological potency of the prepared brassinosteroid analogs as plant hormones, which were carefully established in the French bean second internode elongation assay and discuss our observations in light of the recently reported structural data detailing the molecular interactions between brassinolide in the trimeric complex with the protein receptors kinases BRASSINOSTEROID INSENSITIVE 1 (BRI1) and SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 (SERK1). In a further part of this work we describe the preparation of H2O‐soluble pro‐forms of 24‐epicastasterone and we discuss their physical properties, hydrolytic stabilities and biological activity.

Insulated molecular wires: inhibiting orthogonal contacts in metal complex based molecular junctions.

Metal complexes are receiving increased attention as molecular wires in fundamental studies of the transport properties of metal|molecule|metal junctions. In this context we report the single-molecule conductance of a systematic series of d8 square-planar platinum(ii) trans-bis(alkynyl) complexes with terminal trimethylsilylethynyl (C[triple bond, length as m-dash]CSiMe3) contacting groups, e.g. trans-Pt{C[triple bond, length as m-dash]CC6H4C[triple bond, length as m-dash]CSiMe3}2(PR3)2 (R = Ph or Et), using a combination of scanning tunneling microscopy (STM) experiments in solution and theoretical calculations using density functional theory and non-equilibrium Green's function formalism. The measured conductance values of the complexes (ca. 3-5 × 10-5G0) are commensurate with similarly structured all-organic oligo(phenylene ethynylene) and oligo(yne) compounds. Based on conductance and break-off distance data, we demonstrate that a PPh3 supporting ligand in the platinum complexes can provide an alternative contact point for the STM tip in the molecular junctions, orthogonal to the terminal C[triple bond, length as m-dash]CSiMe3 group. The attachment of hexyloxy side chains to the diethynylbenzene ligands, e.g. trans-Pt{C[triple bond, length as m-dash]CC6H2(Ohex)2C[triple bond, length as m-dash]CSiMe3}2(PPh3)2 (Ohex = OC6H13), hinders contact of the STM tip to the PPh3 groups and effectively insulates the molecule, allowing the conductance through the full length of the backbone to be reliably measured. The use of trialkylphosphine (PEt3), rather than triarylphosphine (PPh3), ancillary ligands at platinum also eliminates these orthogonal contacts. These results have significant implications for the future design of organometallic complexes for studies in molecular junctions.

The antiprotozoal potencies of newly prepared 3-azabicyclo[3.2.2]nonanes.

3-Azabicyclo[3.2.2]nonanes are already reported as antiprotozoal agents. Structural variations were performed by attachment of several basic side chains, being part of drugs in use, to the ring nitrogen. The structures of the new compounds were established using one and two dimensional NMR measurements. All compounds were investigated for their antiplasmodial and antitrypanosomal activities against Plasmodium falciparum K 1 (multiresistant) and Trypanosoma brucei rhodesiense. Their cytotoxicity was assessed against L6 cells. The results are compared to the activities of formerly synthesized compounds. Structure-activity relationships are discussed.

Excitation Energy Transfer in meta‐Substituted Phenylacetylene Multibranched Chromophores

A comprehensive investigation into the spectral properties and excitation energy transfer in di- or tribranched dithienyldiketopyrrolopyrrole (DPP) molecules with meta-substituted benzene as a central core (TADPP2-TT and TADPP3), by means of steady-state and transient measurements and quantum chemical calculations, is reported. Excitation in the meta-substituted chromophores is localized on one of the DPP units in the branching molecules owing to the disruption of conjugation by meta substitution for both TADPP2-TT and TADPP3. Weak electronic couplings result from the long distance between the DPP chromophores and the steric effects from the attached side chains on DPP. The attachment of the acetylene linker in each branch, which has a very low twisting barrier, could also play an important role in reducing the interaction between DPP chromophores. The dynamics of the excited states show that excitation energy transfer occurs on the picosecond scale, which is attributed to the incoherent hopping mechanism.

Protein-Backbone Thermodynamics across the Membrane Interface

The thermodynamics of insertion of a protein in a membrane depends on the fine interplay between backbone and side-chain contributions interacting with the lipid environment. Using computer simulations, we probe how different descriptions of the backbone glycyl unit affect the thermodynamics of insertion of individual residues, dipeptides, and entire transmembrane helices. Due to the lack of reference data, we first introduce an efficient methodology to estimate atomistic potential of mean force (PMF) curves from a series of representative and uncorrelated coarse-grained (CG) snapshots. We find strong discrepancies between two CG models, Martini and PLUM, against reference atomistic PMFs and experiments. Atomistic simulations suggest a weak free energy of insertion between water and a POPC membrane for the glycyl unit, in overall agreement with experimental results despite severe assumptions in our calculations. We show that refining the backbone contribution in PLUM significantly improves the PMF of insertion of the WALP16 transmembrane peptide. An improper balance between the glycyl backbone and the attached side chain will lead to energetic artifacts, rationalizing Martini's overstabilization of WALP's adsorbed interfacial state. It illustrates difficulties associated with free-energy-based parametrizations of single-residue models, as the relevant free energy of partitioning used for force-field parametrization does not arise from the entire residue but rather the solvent-accessible chemical groups.

Sodium and Potassium Ion Selective Conjugated Polymers for Optical Ion Detection in Solution and Solid State

This paper presents the development of alkali metal ion selective small molecules and conjugated polymers for optical ion sensing. A crown ether bithiophene unit is chosen as the detecting unit, as both a small molecule and incorporated into a conjugated aromatic structure. The complex formation and the resulting backbone twist of the detector unit is investigated by UV–vis and NMR spectroscopy where a remarkable selectivity toward sodium or potassium ions is found. X‐ray diffraction analysis of single crystals with and without alkali metal ions is carried out and a difference of the dihedral angle of more than 70° is observed. In a conjugated polymer structure, the detector unit has a higher sensitivity for alkali metal ion detection than its small molecule analog. Ion selectivity is retained in polymers with solubility in polar solvents facilitated by the attachment of polar ethylene glycol side chains. This design concept is further evolved to develop a sodium‐salt solid state sensor based on blends of the detecting polymer with a polyvinyl alcohol matrix where the detection of sodium ions is achieved in aqueous salt solutions with concentrations similar to biologically important environments.

Fluorinated betulinic acid derivatives and evaluation of their anti-HIV activity.

Several fluorinated derivatives of the anti-HIV maturation agent bevirimat (1) were synthesized and evaluated for anti-HIV replication activity. The modified positions were the C-2, C-3, C-28, and C-30 positions, either directly on the betulinic acid (2) skeleton or in the attached side chains. Compound 18, which has a trifluoromethyl group added to C-30 of its isopropenyl group, exhibited similar potency to 1 against HIV-1NL4-3. In total, our current studies support our prior conclusion that C-30 allylic modification is unlikely to be a pharmacophore for anti-HIV activity, but could be a meaningful route to manipulate other properties of 2-related compounds.

Influence of side groups on the performance of infrared absorbing aza‐BODIPY organic solar cells

AbstractAbstractauthoren Organic solar cells are a promising technology for a large area conversion of sunlight into electricity. In particular for solar cells based on oligomers (small molecules), efficient donor materials absorbing wavelengths larger than 780 nm are still rare. Here, we investigate three aza‐BODIPY dyes absorbing in the infrared. The addition of side groups leads to a red shift of the optical gap from 802 to 818 nm. In optimized devices using these donors in a bulk heterojunction with , we observe a higher charge carrier mobility and a higher power conversion efficiency for the molecules without a methyl or methoxy side group lowering the molecular reorganization energy. Surprisingly, the donor–acceptor blend with the lowest energy loss during the electron transfer to the yields the highest short circuit current. With increasing size of the attached side chain, the devices exhibit a larger trap density, measured by impedance spectroscopy. Based on the investigation of different blend ratios, we conclude that these traps are mainly present in the donor phase.

Design of an ionic liquid as a solvent for the extraction of a pharmaceutical intermediate

Abstract Ionic liquids (ILs) have generated considerable interest as potential alternatives to traditional organic solvents in the liquid–liquid extraction process. Performing experiments with various ILs to determine the suitability of these molecules for specific tasks is expensive and time consuming. Thus, computer aided molecular design (CAMD) methodology has been employed to design an IL as a solvent for extraction in three different case studies, where the design of a single side chain attachment, an additional attachment and double attachments to an IL have been considered. Further, a CAMD problem is formulated for the extraction of a pharmaceutical intermediate, R-phenylacetylcarbinol from an aqueous phase, with bounds on properties including distribution coefficient (m), solvent loss (SL), selectivity (β), solvent power (SP), octanol–water partition coefficient, thermal decomposition temperature and melting point. These properties have been estimated using the UNIFAC-IL model and the group contribution method. The exhaustive direct search method has been employed to design potential ILs which are superior in performance to toluene, the solvent employed in current industrial practice. Further, the associations between the properties m, SL, β and SP have been determined using graphical and statistical analyses. We have identified m and SL as the independent solvent performance indicators. The potential solvents obtained from each case study are, therefore, arranged either in descending order of m or in ascending order of SL and reported here.

Water Uptake in Novel, Water-Stable, Heteropoly Acid Films

Operating a fuel cell at high temperature and low humidity can reduce catalyst and heat and water management cost in addition to improved tolerance to fuel impurities [1]. Traditional perfluorinated sulfonic acid proton exchange membranes do not operate well under these conditions, due to a need for high hydration to facilitate proton transport. Heteropoly acids (HPA)s have demonstrated promise for high temperature, low humidity fuel cell operation, but often are not immobilized, resulting in premature fuel cell performance loss[2]. In order to overcome this, a novel, chemically and thermally robust chemistry has been explored. Phenyl phosphonic acid side chains are grafted onto a 3M polyvinyl fluoride-co-hexafluoropropylene, FC-2178. These phenyl phosphonic acid (PPA) side chains then react with lacunary silicotungstic acid, thus immobilizing the HPAs, via covalent bonds. Different levels of PPA attachment have been explored, giving different ion-exchange capacities. 31P and 1H NMR have been used to determine the side chain attachment and IEC of the PPA functionalized FC-2178. The immobilized tungsten content was measured using PIXE (Proton Induced X-ray Emission) elemental analysis. Knowledge of the IEC and tungsten content elucidates the contributions to IEC from both PPA and HPA. SAXS and AFM have been used to determine the membrane morphology. Samples with a continuous conducting phase have shown proton conductivities up to 20 mS/cm at 110°C and 50% RH.

Ring-opening graft polymerization of propylene carbonate onto xylan in an ionic liquid.

The amidine organocatalyst 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) is an effective nucleophilic catalyst. Biocomposites with tuneable properties were successfully synthesized by ring-opening graft polymerization (ROGP) of propylene carbonate (PC) onto xylan using DBU as a catalyst in the ionic liquid (IL) 1-allyl-3-methylimidazolium chloride ([Amim]Cl). The effects of reaction temperature, reaction time and the molar ratio of PC to anhydroxylose units (AXU) in xylan were investigated. The physico-chemical properties of xylan-graft-poly(propylene carbonate) (xylan-g-PPC) copolymers were characterised by FT-IR, NMR, TGA/DTG, AFM and tensile analysis. The FT-IR and NMR results indicated the successful attachment of PPC onto xylan. TGA/DTG suggested the increased thermal stability of xylan after the attachment of PPC side chains. AFM analysis revealed details about the molecular aggregation of xylan-g-PPC films. The results also showed that with the increased DS of xylan-g-PPC copolymers, the tensile strength and Young’s modulus of the films decreased, while the elongation at break increased.