Core Assemblages Research Articles

Root rot induces a core assemblage of bacterial microbiome to prevent disease infection in Sanqi ginseng

Plants rely on rhizosphere microbes as the first line of defense against pathogen invasion and for maintaining the health of itself. Increasing evidence suggests that plants recruit beneficial microbes to the roots, strengthening their resistance to pathogens. However, the response of the rhizosphere core bacterial microbiome to root rot infection remains largely unclear. In this study, we investigated the rhizosphere and bulk soil core bacterial microbiome of healthy and root rot-diseased Sanqi ginseng in genuine production areas in China. We utilized 16S amplicon sequencing, co-occurrence network analysis, and strain culture approaches to explore whether root rot-induced plant rhizosphere alterations in the bacterial core microbiome could improve disease suppression. Root rot infection had a significant impact on the rhizosphere core bacterial microbiome of Sanqi ginseng. Root rot led to a reduction in the diversity and evenness of the core bacterial microbiome in the rhizosphere, while the variability of the core bacterial community in the rhizosphere increased. In response to fungal root rot pathogen infestation, Sanqi ginseng recruited potentially beneficial bacteria with disease-suppressive functions to the rhizosphere, such as Sphingobium, Pseudoxanthomonas, Pseudomonas, Stenotrophomonas, and Flavobacterium. Function prediction analysis demonstrated a remarkable enrichment of several functional genes involved in antibiotic biosynthesis in the rhizosphere that was infected with root rot. Strain isolation and pot addition experiments further confirmed the effectiveness of root rot rhizosphere-specific enrichment of Operational Taxonomic Units (OTUs) for controlling root rot. Furthermore, co-occurrence network analysis indicated that root rot activated the disease-suppressive functions of the rhizosphere core bacterial microbiome by enhancing complexity and connectivity at the expense of network stability. These findings expand our knowledge of plant-microbe interactions and provides new evidence supporting the “cry for help” strategy for rhizosphere responses to root rot.

Abrupt diatom assemblage shifts in Lake Baiyangdian driven by distinct hydrological changes and yet more so by gradual eutrophication

Lake Baiyangdian, the largest natural freshwater wetland on the North China Plain, has faced multiple stressors from anthropogenic disturbances and climate change, affecting its aquatic ecosystem over the past century. An improved understanding of the relationship between environmental stresses and ecosystem responses and the mechanisms underlying ecological shifts has significant implications for managing the aquatic ecosystem in Lake Baiyangdian. In this paper, we reconstructed the ecological changes in Lake Baiyangdian over the past 70 years based on diatom assemblages in a sediment core and identified ecological shifts by the Sequential t test Analysis of Regime-shifts algorithm (STARS) and a sequential F test. Our results revealed two ecological shifts. The first ecological shift in the diatom community occurred in approximately 1963, which was associated with the rather abrupt changes, i.e., damming in the basin. This hydrological modification prolongs hydraulic residence time and accelerates nutrient retention, consequently leading to an increase in eutrophic species. Subsequently, the second ecological shift occurred in the 1990 s, which was attributed to sustained nutrient loading due to human activity intensification as well as an increase in the regional temperature. Ongoing nutrient loading finally pushed the lake toward a driver threshold, leading to an abrupt shift in the diatom assemblage. Our study details the complex trajectories of aquatic ecosystem shifts driven by hydrological alteration, increasing nutrient loading, and climate change in Lake Baiyangdian and highlights the processes by which ecological shifts occur in response to both abrupt and gradual stressors.

Unravelling technological behaviors through core reduction intensity. The case of the early Protoaurignacian assemblage from Fumane Cave

This paper investigates core reduction intensity in the early Protoaurignacian lithic assemblage from Fumane Cave in northeastern Italy. Reduction intensity serves as a key tool to characterize blank selection strategies, raw material management, and the variability of knapping strategies throughout the reduction sequence by reconstructing the operatory field of core assemblages. Finally, it also aids in addressing the relationship between blades and bladelets, providing valuable insights into the behavioral and chrono-cultural significance of laminar productions within the Aurignacian technocomplex. To achieve these research goals, experimental work employing 3D scanning technology was conducted. This facilitated the comparison of different methods and variables for measuring reduction intensity, including the percentage of non-cortical surface, the Scar Density Index (SDI), and a novel adaptation of the Volumetric Reconstruction Method (VRM). Results demonstrate the effectiveness and potential of adapting the VRM for the study of reduction intensity in Upper Paleolithic laminar cores, and the provided R scripts and datasets will enable this method to be applied to other contexts with minimal need for modification to the workflow. Analysis of reduction intensity measures applied to the Protoaurignacian assemblage from Fumane Cave reveals slight variations based on factors such as the abundance and proximity of selected raw materials for blank production. Notably, the most prevalent raw material variety, the Maiolica, yields a higher number of less reduced cores, while reduction levels across all cores discarded at the site remain relatively high. The observed variability in the operatory field and the interrelation between blade and bladelet productions underscore the complexity and flexibility of Protoaurignacian behavior. This inherent complexity challenges any definitive separation between the operatory fields of blade and bladelet productions. These findings are particularly important to emphasize the importance of considering reduction intensity when examining technological variability and human behavior in Aurignacian studies. The proposed adaptation of the VRM and the effective combination with other measures of reduction, promises to allow future research to incorporate reduction intensity as a vital temporal component within studies on stone tool production. This integration offers a pathway to enhancing our understanding of the adaptive behaviors exhibited by Homo sapiens across diverse ecological settings and provides a clearer framework for better framing the development of the Upper Paleolithic.

A new method for examining the co-occurrence network of fossil assemblages

Currently, studies of ancient faunal community networks have been based mostly on uniformitarian and functional morphological evidence. As an important source of data, taphonomic evidence offers the opportunity to provide a broader scope for understanding palaeoecology. However, palaeoecological research methods based on taphonomic evidence are relatively rare, especially for body fossils in lacustrine sediments. Such fossil communities are not only affected by complex transportation and selective destruction in the sedimentation process, they also are strongly affected by time averaging. Historically, it has been believed that it is difficult to study lacustrine entombed fauna by a small-scale quadrat survey. Herein, we developed a software, the TaphonomeAnalyst, to study the associational network of lacustrine entombed fauna, or taphocoenosis. TaphonomeAnalyst allows researchers to easily perform exploratory analyses on common abundance profiles from taphocoenosis data. The dataset for these investigations resulted from fieldwork of the latest Middle Jurassic Jiulongshan Formation near Daohugou Village, in Ningcheng County of Inner Mongolia, China, spotlighting the core assemblage of the Yanliao Fauna. Our data included 27,000 fossil specimens of animals from this deposit, the Yanliao Fauna, whose analyses reveal sedimentary environments, taphonomic conditions, and co-occurrence networks of this highly studied assemblage, providing empirically robust and statistically significant evidence for multiple Yanliao habitats.

Benthic mollusc communities across space and through time in a hypersaline coastal lagoon, Mexico

The coast of the Yucatan Peninsula (Mexico) has undergone numerous changes over the last century as a result of population growth, shifts in land use, establishment of industries, and storm impacts. To understand how the mollusc fauna responded to these changes over time, paleoecological studies were conducted to compare historical and modern data, and to reveal information on past environmental conditions. We analyzed mollusc assemblages in sediment cores from Río Lagartos coastal lagoon, which span the last ∼70 years. Mollusc assemblages in the sediment cores were compared to a modern inventory of Mollusca fauna, which was compiled to assess species distributions associated with multiple environmental variables. Mollusc assemblages from the sediment cores (17,089 specimens), which represent 19 bivalve and 43 gastropod species, and modern inventory datasets possess the same ubiquitous species and the same feeding guilds, i.e., groups that exploit the same food resources. Nearly twice as many species were identified in the sediment cores as in the modern inventory. This finding probably reflects the fact that the mollusc community changed through time at the core sites in response to shifting environmental conditions. Nevertheless, we encountered a number of taxa in the modern survey samples, which were absent from the sediment cores. This was probably a consequence of the limited spatial coverage of the cores and small diameter of the core barrels, which precluded sampling of large taxa. We report differences in mollusc abundance and taxonomic composition in the cores across space and time, which may be related to salinity changes in the lagoon and modifications of the nearby terrestrial environment.

Molluscs Across Space and Through Time in a Hypersaline Coastal Lagoon, Mexico

Biotic remains have been used in paleoecological studies to provide information on past environmental conditions. Death assemblages can be used to make inferences about past environmental conditions if modern optima and ranges of taxa are known. Gaps in knowledge about historical biotic changes often stem from a paucity of information regarding species distributions, community species richness and evenness, community structure, ecological interactions, and possible factors that caused past biotic shifts. We studied mollusc assemblages in sediment cores from Río Lagartos coastal lagoon (Mexico) and compared them to present-day mollusc communities to gain insights into environmental changes that occurred in the lagoon throughout the last century. A total of 18,779 mollusc specimens, representing 20 bivalve and 45 gastropod species, and belonging to 32 families and 48 genera, were identified in three short sediment cores collected from the coastal lagoon in 2017. Molluscs in the sediment cores were compared to an inventory of modern fauna from the lagoon, which was collected along a salinity gradient in 2017 and 2018 to link species distributions with environmental variables. Mollusc communities from the sediment cores and present-day datasets possess the same ubiquitous species and feeding guilds. Nearly twice as many species, however, were identified in the sediment cores as in the present-day inventory. We report differences in mollusc abundance and taxonomic composition in the cores across space and time, which may be related to the salinity gradient in the lagoon, temporal shift in salinity, and recent human-mediated modifications of the nearby terrestrial environment. Biotic changes driven by shifts in salinity could have been reduced salinity. Such inputs may have been driven by hurricanes, along with associated high wind velocities and geomorphologic transformations. This paleobiology study will be of use for future conservation efforts in the coastal lagoon.

THE DISTRIBUTION RANGE OF CALCAREOUS NANNOFOSSIL SPECIES <em>RETICULOFENESTRA PSEUDOUMBILICUS</em> IN THE MIOCENE: AN EXAMPLE OF ECOLOGICAL INFLUENCE ON EVOLUTIONARY DEVELOPMENT

Reticulofenestra pseudoumbilicus is a Neogene calcareous nannofossil species whose highest stratigraphic occurrence (Top) is a reliable biohorizon in the Pliocene, calibrated at 3.82 Ma. The species is present in the stratigraphic record from at least the Middle Miocene, within an interval around the biohorizon Top Sphenolithus heteromorphus, calibrated at 13.53 Ma, but its lower distribution range is not precisely delineated. The study of nannofossil assemblages in sediment cores from Integrated Ocean Drilling Program IODP Site U1338 (eastern equatorial Pacific) indicates a lower stratigraphic position for the evolutionary emergence (Base) of R. pseudoumbilicus, detected in the Early Miocene with an estimated age of 16.46 Ma. This age results from a new astronomically tuned chronology, which dates the deepest sediments at Site U1338 to 16.67 Ma. Base R. pseudoumbilicus is followed above by a temporary disappearance of the taxon until a re-entrance after ~3 Myr. This lengthened stratigraphic range has been confirmed by data from other locations at low and mid-latitudes in the Atlantic. The distribution range of R. pseudoumbilicus, lasting ~13 Myr during the Neogene, is thus characterized by a variable pattern of repeated occurrences and disappearances. Comparison to benthic foraminifera δ18O and δ13C records suggests a control by global climatic/environmental conditions on these events, particularly by temperature variations. The recurrent presence of R. pseudoumbilicus at stratigraphically different intervals could represent an example of iterative evolution, expressed as repeated speciation events that are in part influenced by complex external factors related to the dynamic climate and environmental evolution during the Miocene.

One Tree Reef Foraminifera: a relic of the pre-colonial Great Barrier Reef

Abstract Benthic Foraminifera are important elements of coral reef ecosystems and valuable proxies for monitoring reef health in the face of local, regional and global stressors. Here Foraminifera preserved in a sediment core from the One Tree Reef (OTR) lagoon on the southern Great Barrier Reef (GBR) are used to quantify ecological changes associated with European colonization (early 1800s) and the subsequent industrialization of Australia (1950s onward). Core samples are compared to published benthic grab samples from three reefs to compare spatial and temporal variation. Standard measures of richness, diversity and foraminiferal assemblage composition indicate significant differences between the Recent assemblages of OTR lagoon and those from Heron and Wistari reef lagoons. However, there is no discernible change in the OTR lagoon core assemblages from the last four centuries in any of the richness or diversity indices examined. While benthic grabs likely undersample infaunal Foraminifera relative to core samples, these foraminiferal assemblages indicate the OTR lagoon contains a living example of a pre-colonial GBR lagoon ecosystem. Without cores from Heron and Wistari it is unknown if their foraminiferal assemblages have changed due to recent anthropogenic activity or if they have always been distinct.

A diatom-based predictive model for inferring past conductivity in Chadian Sahara lakes

For decades, diatoms have been recognized as powerful bio-indicators of modern water quality. They have also been utilized in the design of transfer functions, which can be applied to diatom assemblages in lake sediment cores to infer aspects of past lake hydrochemistry and estimate variables that can be incorporated into paleohydrology models. The Ounianga lakes, in the heart of the Chadian Sahara, possess unique and well-preserved sediment records that extend back beyond the middle Holocene. Today, the lakes display a range of hydrochemical conditions, from fresh to hypersaline. Mainly fed by fossil groundwater that originates in the Nubian Sandstone Aquifer System, measured conductivity across these lakes varies from 217 to 352,000 µS cm−1, values that are influenced by factors such as hydrology, local geomorphology (e.g., depth and area), and aquatic vegetation. Although these lakes have been on the UNESCO World Heritage List since 2012, they have never been studied in detail because they are located on the fringes of the Chadian Sahara. The distribution of diatom taxa in the lakes today is closely linked to water-column physical and chemical conditions, especially conductivity. Whereas each lake has particular features that influence its diatom flora, diatoms across a conductivity gradient enabled identification of three distinct waterbody types, freshwater lakes, meso-saline to hyper-saline lakes, and freshwater springs. Relationships between diatom species distributions and environmental variables were examined using multivariate analysis, which revealed that conductivity is the variable that explains most of the variance in the diatom flora. We used modern diatom assemblages from the lakes to develop a predictive model (transfer function) for conductivity, using the weighted averaging method. Our conductivity prediction model is strong, with a coefficient of determination (R2) of 0.89 between estimated and measured values, and a value of 0.78 using jackknife estimates of prediction. This study better constrained conductivity optima and tolerance values for diatom species found in the Ounianga lakes, thereby enabling development of a model that will yield better inferences for past conductivity, using diatoms from lake sediment records in the region.

Late Holocene environmental change in Celestun Lagoon, Yucatan, Mexico

Epikarst estuary response to hydroclimate change remains poorly understood, despite the well-studied link between climate and karst groundwater aquifers. The influence of sea-level rise and coastal geomorphic change on these estuaries obscures climate signals, thus requiring careful development of paleoenvironmental histories to interpret the paleoclimate archives. We used foraminifera assemblages, carbon stable isotope ratios (δ13C) and carbon:nitrogen (C:N) mass ratios of organic matter in sediment cores to infer environmental changes over the past 5300 years in Celestun Lagoon, Yucatan, Mexico. Specimens (> 125 µm) from modern core top sediments revealed three assemblages: (1) a brackish mangrove assemblage of agglutinated Miliammina and Ammotium taxa and hyaline Haynesina (2) an inner-shelf marine assemblage of Bolivina, Hanzawaia, and Rosalina, and (3) a brackish assemblage dominated by Ammonia and Elphidium. Assemblages changed along the lagoon channel in response to changes in salinity and vegetation, i.e. seagrass and mangrove. In addition to these three foraminifera assemblages, lagoon sediments deposited since 5300 cal yr BP are comprised of two more assemblages, defined by Archaias and Laevipeneroplis, which indicate marine Thalassia seagrasses, and Trichohyalus, which indicates restricted inland mangrove ponds. Our data suggest that Celestun Lagoon displayed four phases of development: (1) an inland mangrove pond (5300 BP) (2) a shallow unprotected coastline with marine seagrass and barrier island initiation (4900 BP) (3) a protected brackish lagoon (3000 BP), and (4) a protected lagoon surrounded by mangroves (1700 BP). Stratigraphic (temporal) changes in core assemblages resemble spatial differences in communities across the modern lagoon, from the southern marine sector to the northern brackish region. Similar temporal patterns have been reported from other Yucatan Peninsula lagoons and from cenotes (Nichupte, Aktun Ha), suggesting a regional coastal response to sea level rise and climate change, including geomorphic controls (longshore drift) on lagoon salinity, as observed today. Holocene barrier island development progressively protected the northwest Yucatan Peninsula coastline, reducing mixing between seawater and rain-fed submarine groundwater discharge. Superimposed on this geomorphic signal, assemblage changes that are observed reflect the most severe regional wet and dry climate episodes, which coincide with paleoclimate records from lowland lake archives (Chichancanab, Salpeten). Our results emphasize the need to consider coastal geomorphic evolution when using epikarst estuary and lagoon sediment archives for paleoclimate reconstruction and provide evidence of hydroclimate changes on the Yucatan Peninsula.

Initial Results From the Oman Drilling Project Multi‐Borehole Observatory: Petrogenesis and Ongoing Alteration of Mantle Peridotite in the Weathering Horizon

AbstractThe Oman Drilling Project “Multi‐Borehole Observatory” (MBO) samples an area of active weathering of tectonically exposed peridotite. This article reviews the geology of the MBO region, summarizes recent research, and provides new data constraining ongoing alteration. Host rocks are partially to completely serpentinized, residual mantle harzburgites, and replacive. Dunites show evidence for “reactive fractionation,” in which cooling, crystallizing magmas reacted with older residues of melting. Harzburgites and dunites are 65%–100% hydrated. Ferric to total iron ratios vary from 50% to 90%. In Hole BA1B, alteration extent decreases with depth. Gradients in water and core composition are correlated. Serpentine veins are intergrown with, and cut, carbonate veins with measurable14C. Ongoing hydration is accompanied by SiO2addition. Sulfur enrichment in Hole BA1B may result from oxidative leaching of sulfur from the upper 30 m, coupled with sulfate reduction and sulfide precipitation at 30–150 m. Oxygen fugacity deep in Holes BA3A, NSHQ14, and BA2A is fixed by the reaction 2H2O = 2H2 + O2combined with oxidation of ferrous iron in serpentine, brucite, and olivine. fO2deep in Holes BA1A, BA1D, and BA4A is 3–4 log units above the H2O‐H2limit, controlled by equilibria involving serpentine and brucite. Variations in alteration are correlated with texture, with reduced, low SiO2assemblages in mesh cores recording very low water/rock ratios, juxtaposed with adjacent veins recording much higher ratios. The proportion of reduced mesh cores versus oxidized veins increases with depth, and the difference in fO2recorded in cores and veins decreases with depth.

Aquatic Biological Diversity Responses to Flood Disturbance and Forest Management in Small, Forested Watersheds

We examined riparian system responses to an extreme rainfall event on 1–4 December 2007, in eleven small watersheds (mean area—13.2 km2) from 2008–2016 at debris flow, high flood, and low flood reaches (all extended overbank flows). Macroinvertebrate responses followed expected outcomes after extreme disturbance including increasing chironomids and other multi-voltine species. A core assemblage of twenty abundant and common species-maintained populations even after debris flow (likely by recolonizing quickly) with total richness during project of 253 including 183 rare species (<0.01 total abundance) supporting an annual turnover of species from 22 to 33%. Primary disturbance changes to habitat were declines in shade and in-channel wood at all reaches, more strongly at debris flow reaches. Macroinvertebrate communities across disturbance intensities became increasingly similar after the storm. Combined effects of the flood reducing channel complexity and previous logging decreasing in-channel wood recruitment from riparian systems, limits habitat complexity. Until this feature of forested watershed streams returns, there appears to be a ceiling on reach scale aquatic biological diversity.

Landscape Is the Main Driver of Weed Assemblages in Field Margins but Is Outperformed by Crop Competition in Field Cores.

Weeds are considered a major pest for crops, and as such have been intensively managed by farmers. However, weeds, by providing resources, also support farmland biodiversity. The challenge for sustainable weed management is therefore to maintain weed diversity without compromising crop production. Meeting this challenge requires determining the processes that shape weed assemblages, and how agricultural practices and landscape arrangement affect them. In this study, we assess the effects of crop competition on weeds, nitrogen input, weed control and landscape on both weed diversity and abundance in the margins and centres of 115 oilseed rape fields in Western France. We show that weed assemblages in field cores were mainly shaped by crop height, a proxy of crop competition. By contrast, weed assemblages in field margins increased with the number of meadows in the landscape, revealing the role of spatial dispersal. Using structural equation modelling, we further show that in the field core, weed assemblages were also indirectly shaped by landscape through spatial dispersal from the field margin. Overall, our study gives empirical support for crop competition as a way to reduce the intensity of chemical weeding, and for meadows as a way to enhance biodiversity in the landscape.

Mollusk death assemblages in 210Pb-dated marine sediment cores reveal recent biotic changes in the Gulf of Guanahacabibes, NW Cuba

We investigated stratigraphic changes in mollusk death assemblages and geochemistry in sediment cores from four seagrass beds and one unvegetated site in the Gulf of Guanahacabibes (GG), NW Cuba. There was a transition from mangrove to seagrass beds, associated with sea level rise ∼6000 years ago. Sediment accumulation rates during the last century showed a general rise, but increased sharply after ∼1980, likely because of human activities. The GG displayed overall high mollusk γ-diversity, and our estimate of 189 species is biased toward the low end. High β-diversity was driven by inter-site differences in grain size, vegetation cover, and nutrient input. Spatial heterogeneity within the basin influenced downcore abundance and diversity metrics, highlighting the influence of local drivers. Herbivorous gastropods dominated in seagrass beds and suspension feeder bivalves were dominant on sandy bottom. In the top parts of cores, species richness declined at two sites that were subject to high, human-mediated bulk sedimentation rates and eutrophication. Conservation measures are needed to preserve this hotspot of marine diversity.

Identifying Local Learning Communities During the Terminal Palaeolithic in the Southern Levant: Multi-scale 3-D Analysis of Flint Cores

A methodology for identifying prehistoric local learning communities is proposed. We wish to test possible relationships among communities based on continuity and variability in lithic reduction sequence technological traits with different visibility and malleability. Quantitative features reflecting different technological traits are measured on 3-D models of flint cores in different scales: the ratio between core thickness and reduction surface width, the angle between subsequent bands of production blank scars to the relative striking platform, and the average curvature of the ridge between each blank scar striking platform pair. Continuity and variability in these features are used to establish the relations among lithic assemblages on different hierarchical levels: local learning communities and geographically widespread cultural lineages. The Late Upper Palaeolithic and the Epipalaeolithic of the Southern Levant (ca. 27,000–15,000 cal BP) provide an opportunity to test our method. A progressive increase in territoriality is hypothesized throughout this timespan, yet the precise timing and modes of this phenomenon need to be defined. The present study analyzes six core assemblages attributed to different cultural entities, representing chronologically separated occupations of the Ein Gev area and the coastal Sharon Plain. Continuity in technological traits between the Atlitian (ca. 27,000–26,000 cal BP) and Nizzanan (ca. 20,000–18,500 cal BP) occupations of the Ein Gev area suggests that the same learning community repeatedly settled there during a long time span. Two geographically separate learning communities were defined in the study areas within the Kebaran cultural entity (ca. 24,000–18,000 cal BP); the group occupying the Ein Gev area possibly continued to settle there during the Geometric Kebaran (ca. 18,000–15,000 cal BP). Continuity in more conservative traits of the reduction sequence allows to tie these two communities to the same cultural lineage. The ability to track prehistoric learning communities based on quantitative features helps increase the objectivity and the resolution in the reconstruction of past cultural dynamics.

Food availability and temperature optima shaped functional composition of chironomid assemblages during the Late Glacial–Holocene transition in Northern Europe

Non-biting midges (Chironomidae) are the most diverse and abundant invertebrate group in boreal lakes and are strongly responsive to climate change, thus they are a valuable palaeoecological proxy for studying aquatic biodiversity response in the face of climate change. Here, we aim to decipher the influence of climate-induced changes on temporal patterns in chironomid assemblages. We apply a novel approach combining traditional taxon-based analysis and species-trait framework to subfossil chironomid assemblages in a sediment core covering the Late Glacial–Holocene transition in Northern Europe. We produce pollen-based July and January temperature reconstructions to characterize past climate fluctuations that show a distinct Early Holocene warming for continuous 1700 years with considerably greater warming in winter (ca. 10 °C) than summer (ca. 4 °C) temperature. Overall, chironomid taxonomic changes were mainly induced by the temperature tolerances and optima of species, as temporal dynamics showed agreement with temperature reconstructions. Our results suggest that vegetation dynamics could also play a role in structuring chironomid assemblages by selecting taxa with the highest ability to exploit available food resources, thus potentially confounding chironomid-based summer climate reconstructions. We demonstrate that the study of the hidden chironomid functional composition could help to identify secondary drivers and thus strengthen the reliability of climate reconstruction based on subfossil chironomids.

Application of a Diatom Transfer Function to Quantitative Paleoclimatic Reconstruction — A Case Study of Yunlong Lake, Southwest China

Although diatom records from lake sediments have been used for quantitative paleoclimatic reconstruction, their validity and sensitivity have rarely been tested rigorously. At Yunlong Lake, an alpine lake in Southwest China, we studied the seasonal succession of diatom assemblages to produce a mean surface water temperature (MSWT) transfer function. In addition, based on the spatial distribution of surface diatom assemblages with water depth, we produced a diatom-water depth (WD) transfer function. Combined with the analysis of diatom assemblages in a sediment core (YL2013-A), changes in surface water temperature and water level over the last ∼100 years were quantitatively reconstructed using the diatom-based transfer functions. Comparison with records of regional meteorology and reservoir water capacity revealed that the diatom-based lake water level reconstruction is a sensitive indicator of short-term fluctuations in precipitation, and it also reflects a long-term stepwise rise in water level caused by the impounding and large-scale extension of the reservoir. In addition, the diatom-inferred MSWT is consistent with the changes in air temperature prior to large-scale human disturbance of the site. However, after the extension of the reservoir, although the regional air temperature continued to increase, the water temperature decreased substantially. This suggests that the large increase in lake water volume in the short term led to a decrease in the average water temperature, which in turn led to the occurrence of a diatom bloom in the cold season. The results demonstrate that diatom transfer functions based on modern observations of the same lake has a high environmental sensitivity and can be used for the quantitative reconstruction of regional climate change. Overall, our findings provide a foundation for the use of lake diatom records for quantitative paleoclimatic reconstruction on various timescales.

Biotic response of benthic foraminifera to OMZ variations in the northwestern Pacific since the last deglaciation

Recent declines in oxygen concentrations in the global oceans have been particularly acute in oxygen minimum zones (OMZ) at intermediate depths. Fossil benthic foraminifera have the potential to provide useful information on the long-term biotic responses of marine organisms to past variations in the OMZ. During the last deglaciation, the OMZ at 1 km water depth in the northwestern Pacific Ocean intensified. However, temporal variations in benthic foraminifera in the upper layer of the OMZ since the last deglaciation are poorly understood. Thus, we studied temporal variations in benthic foraminifera assemblages in a sediment core taken from a water depth of 777 m off of Hokkaido, North Japan, to determine their biotic responses to environmental changes in the upper layer of the OMZ from the last deglaciation to the late Holocene. The results suggested that dysoxic species such as Bolivina seminuda and Buliminella tenuata increased rapidly during the Bolling/Allerod warming event, which was associated with severe oxygen depletion and expansion of the OMZ. Similar dysoxic assemblages were recorded at 1 km water depth in this region. On the other hand, the dominance of the oxic species Nonionellina labradorica during the Younger Dryas cold period may indicate that oxygenation events were induced by intensification of intermediate water ventilation. Suboxic assemblages composed of Uvigerina akitaensis, Bolivina spissa, and Elphidium batialis appeared in the late Holocene. The increase in this late Holocene assemblage, which is similar to the modern assemblage in this region, may coincide with gradual cooling around the Japanese Islands.

CHANGES OF THERMOCLINE DEPTH AT THE SUMBA ISLAND OFFSHORE BASED ON PLANKTONIC FORAMINIFERAL ASSEMBLAGES AND ITS IMPLICATION TO EUTROPHICATION SINCE THE LAST DEGLACIATION (~18 ka BP): A PRELIMINARY STUDY

Changes of the thermocline depth (DOT) at the Sumba Island offshore are not well-known compared to the DOT changes in the Timor Sea, the main exit passage of the Indonesian Through-flow (ITF). Planktonic foraminiferal assemblages in cores collected from the southwest Sumba offshore (ST08) and Sumba Strait (ST12, ST13, and ST14) were used as a tool to infer the DOT and paleoproductivity changes at the Sumba Island offshore. The DOT changes were indicated from the thermocline and mixed layer dwellers’ relative abundance while the paleoproductivity changes were indicated from the relative abundance of Neogloboquadrina dutertrei. This study suggests a contrast between the DOT pattern at the Sumba Island offshore and the DOT pattern in the Timor Sea during the Last Deglaciation–Holocene. The contrast DOT pattern indicated that the multi-millennial changes of the Australian-Indonesian monsoon (AIM) during the Last Deglaciation– Holocene were the main factors behind the DOT changes in this region while the effects of El Niño Southern Oscillation (ENSO) –like, Indian Ocean Dipole (IOD) –like, and ITF to DOT changes were minimal. Paleoproductivity enhancement at the Sumba Island offshore was not solely related to the monsoon-driven coastal upwelling intensification, which resulted in the DOT shoaling and eutrophic condition. The increase of nutrient availability in surface water due to river runoff increase and changes in the lifted water mass nature were also able to enhance productivity in this region.

Planktonic foraminifera eDNA signature deposited on the seafloor remains preserved after burial in marine sediments

Environmental DNA (eDNA) metabarcoding of marine sediments has revealed large amounts of sequences assigned to planktonic taxa. How this planktonic eDNA is delivered on the seafloor and preserved in the sediment is not well understood. We address these questions by comparing metabarcoding and microfossil foraminifera assemblages in sediment cores taken off Newfoundland across a strong ecological gradient. We detected planktonic foraminifera eDNA down to 30 cm and observed that the planktonic/benthic amplicon ratio changed with depth. The relative proportion of planktonic foraminiferal amplicons remained low from the surface down to 10 cm, likely due to the presence of DNA from living benthic foraminifera. Below 10 cm, the relative proportion of planktonic foraminifera amplicons rocketed, likely reflecting the higher proportion of planktonic eDNA in the DNA burial flux. In addition, the microfossil and metabarcoding assemblages showed a congruent pattern indicating that planktonic foraminifera eDNA is deposited without substantial lateral advection and preserves regional biogeographical patterns, indicating deposition by a similar mechanism as the foraminiferal shells. Our study shows that the planktonic eDNA preserved in marine sediments has the potential to record climatic and biotic changes in the pelagic community with the same spatial and temporal resolution as microfossils.