Aquatic Nutrient Cycling Research Articles

Nutrient driven transcriptional changes during phage infection in an aquatic Gammaproteobacterium.

SummaryPhages modulate bacterial metabolism during infection by regulating gene expression, which influences aquatic nutrient cycling. However, the effects of shifting nutrient regimes are less understood. Here, we analyzed transcriptomes of an ecologically relevant Gammaproteobacterium and its lytic phage in high (HNM) and low (LNM) nutrient medium. Despite different infection characteristics, including reduced burst size and longer latent period in LNM, the phage had a fixed expression profile. Bacterial transcription was instead different depending on nutrient regime, with HNM bacteria focusing on growth while LNM bacteria focused on motility and membrane transport. Additionally, phage infection had a larger effect on bacterial gene expression in LNM compared to HNM, e.g. suppressing increased iron uptake and altering expression of phosphorus uptake genes. Overall, phage infection influenced host metabolism more in LNM, which was more similar to natural conditions, emphasizing the importance of considering natural conditions to understand phage and host ecology.

Evaluating Instream Restoration Effectiveness in Reducing Nitrogen Export from an Urban Catchment with a Data‐Model Approach

AbstractUrbanization increases stormwater runoff into streams, resulting in channel erosion, and increases in sediment and nutrient delivery to receiving water bodies. Stream restoration is widely used as a Best Management Practice to stabilize banks and reduce sediment and nutrient loads. While most instream nutrient retention measurements are often limited to low flow conditions, most of the nutrient load is mobilized at high stream flows in urban settings. We, therefore, use a process‐based stream ecosystem model in conjunction with measurements at low flows and focus on estimation of stream nitrogen retention over the full streamflow distribution. The model provides a theoretical framework to evaluate the geomorphic, hydrologic, and ecological factors that are manipulated by stream restoration, and drive nitrogen retention. We set a model for a pool‐riffle sequence restored stream (190 m) in Baltimore County, Maryland and calibrated the model to the in situ measured primary production (Nash–Sutcliffe model efficiency coefficient [NSE] NSE = 0.89), respiration (NSE = 0.74), and nitrate uptake lengths (R2 = 0.88). At the daily scale, simulations showed low nitrogen retention during high flows due to high transport rates, mobilization of stored hyporheic nitrogen, and scouring of periphyton biomass. This result underscores the need to reduce contributing watershed runoff flashiness to promote aquatic nutrient cycling and retention. At monthly and yearly time scale, model predicted a higher percent reduction in summer than in winter and estimated 5.7%–9.5% of annual nitrate reductions. While the model was tested in a pool‐riffle sequence restoration design, the approach can be adapted to evaluate a range of channel restoration design characteristics, and the effects of upland watershed restoration to mitigate stormwater loading through both restored and unrestored streams.

New Methods, New Concepts: What Can Be Applied to Freshwater Periphyton?

Microbial interactions play an essential role in aquatic ecosystems and are of the great interest for both marine and freshwater ecologists. Recent development of new technologies and methods allowed to reveal many functional mechanisms and create new concepts. Yet, many fundamental aspects of microbial interactions have been almost exclusively studied for marine pelagic and benthic ecosystems. These studies resulted in a formulation of the Black Queen Hypothesis, a development of the phycosphere concept for pelagic communities, and a realization of microbial communication as a key mechanism for microbial interactions. In freshwater ecosystems, especially for periphyton communities, studies focus mainly on physiology, biodiversity, biological indication, and assessment, but the many aspects of microbial interactions are neglected to a large extent. Since periphyton plays a great role for aquatic nutrient cycling, provides the basis for water purification, and can be regarded as a hotspot of microbial biodiversity, we highlight that more in-depth studies on microbial interactions in periphyton are needed to improve our understanding on functioning of freshwater ecosystems. In this paper we first present an overview on recent concepts (e.g., the “Black Queen Hypothesis”) derived from state-of-the-art OMICS methods including metagenomics, metatranscriptomics, and metabolomics. We then point to the avenues how these methods can be applied for future studies on biodiversity and the ecological role of freshwater periphyton, a yet largely neglected component of many freshwater ecosystems.

Reduced daytime net growth rate of Synechococcus spp. in the East China sea in summer estimated using a dilution approach

Viruses are thought to play a critical role in aquatic nutrient cycling, yet few field experiments have quantified their significance. We conducted fifteen modified dilution experiments in the East China Sea in summer to determine the growth rate and effect of mortality on growth rates of Synechococcus spp. They were measured in a 0.2 μm dilution series in which the abundance of Synechococcus spp. and nanoflagellates were diluted but the viruses were retained. They were also measured in a 30 kDa filtered natural samples in which the abundance of Synechococcus spp., nanoflagellates and viruses were diluted. We found positive relationships between dilution factor and Synechococcus spp. net growth rates. Instantaneous growth rate of Synechococcus spp in 100% whole water generally exceeded rates in other dilution fraction treatments, a result of net growth rates of Synechococcus spp. in undiluted incubations. Throughout the entire study area, growth rate of Synechococcus app. was highly variable and ranged from 0.01 h−1 to 0.17 h−1, with a maximum value appearing in waters with a salinity of around 31 psμ. Most importantly, net growth rates of Synechococcus spp. were suppressed in the 30 kDa dilution series compared to the 0.2 μm dilution series dilution experiments, suggesting that dissolved organic matter available to heterotrophic bacteria and viral lysis contributed to nutrient cycling and made a difference in the growth rates found in the two dilution series.

From concept to practice to policy: modeling coupled natural and human systems in lake catchments

AbstractRecent debate over the scope of the U.S. Clean Water Act underscores the need to develop a robust body of scientific work that defines the connectivity between freshwater systems and people. Coupled natural and human systems (CNHS) modeling is one tool that can be used to study the complex, reciprocal linkages between human actions and ecosystem processes. Well‐developed CNHS models exist at a conceptual level, but the mapping of these system representations in practice is limited in capturing these feedbacks. This article presents a paired conceptual–empirical methodology for functionally capturing feedbacks between human and natural systems in freshwater lake catchments, from human actions to the ecosystem and from the ecosystem back to human actions. We address extant challenges in CNHS modeling, which arise from differences in disciplinary approach, model structure, and spatiotemporal resolution, to connect a suite of models. In doing so, we create an integrated, multi‐disciplinary tool that captures diverse processes that operate at multiple scales, including land‐management decision‐making, hydrologic‐solute transport, aquatic nutrient cycling, and civic engagement. In this article, we build on this novel framework to advance cross‐disciplinary dialogue to move CNHS lake‐catchment modeling in a systematic direction and, ultimately, provide a foundation for smart decision‐making and policy.

Aquatic toxicity of ivermectin in cattle dung assessed using microcosms

Ivermectin (IVM) is a parasiticide widely used for livestock. It is a semisynthetic derivative of avermectin, a macrocyclic lactone produced by Streptomyces avermitilis. This drug is only partly metabolized by livestock; considerable amounts of parent drug are excreted mostly via feces. To simulate exposure of aquatic invertebrates and macrophytes to direct excretion of cattle dung into surface waters, a microcosm experiment with IVM spiked in cattle dung was conducted. The objectives of this study were to characterize accumulation of IVM in water, sediment+dung, roots of the floating fern Salvinia and the zooplankton Ceriodaphnia dubia, the amphipod Hyalella and the apple snail Pomacea; to determine the effect of this drug spiked in cattle dung on life-history traits of these invertebrates; and to evaluate the influence of IVM on aquatic nutrient cycling. Dung was spiked with IVM to attain concentrations of 1150, 458, 50 and 22µgkg−1dung fresh weight, approximating those found in cattle dung at days 3, 7, 16 and 29 following subcutaneous injection. Concentrations found in dung during the first week of excretion were lethally toxic to Ceriodaphnia dubia and Hyalella, whereas no mortality was observed in Pomacea. Concentrations of IVM in roots, sediment + dung and Pomacea increased significantly from the lowest to the highest treatment level. The effect of this drug on decomposition and release of nutrients from dung would have negative consequences for nutrient cycling in water. Increasing concentrations in sediment + dung with days of the experiment suggested that toxic concentrations would persist for an extended period in the water–sediment system. IVM represents an ecological risk for aquatic ecosystems, underscoring the need for livestock management strategies to limit its entry into water bodies.

Risks of large-scale use of systemic insecticides to ecosystem functioning and services.

Large-scale use of the persistent and potent neonicotinoid and fipronil insecticides has raised concerns about risks to ecosystem functions provided by a wide range of species and environments affected by these insecticides. The concept of ecosystem services is widely used in decision making in the context of valuing the service potentials, benefits, and use values that well-functioning ecosystems provide to humans and the biosphere and, as an endpoint (value to be protected), in ecological risk assessment of chemicals. Neonicotinoid insecticides are frequently detected in soil and water and are also found in air, as dust particles during sowing of crops and aerosols during spraying. These environmental media provide essential resources to support biodiversity, but are known to be threatened by long-term or repeated contamination by neonicotinoids and fipronil. We review the state of knowledge regarding the potential impacts of these insecticides on ecosystem functioning and services provided by terrestrial and aquatic ecosystems including soil and freshwater functions, fisheries, biological pest control, and pollination services. Empirical studies examining the specific impacts of neonicotinoids and fipronil to ecosystem services have focused largely on the negative impacts to beneficial insect species (honeybees) and the impact on pollination service of food crops. However, here we document broader evidence of the effects on ecosystem functions regulating soil and water quality, pest control, pollination, ecosystem resilience, and community diversity. In particular, microbes, invertebrates, and fish play critical roles as decomposers, pollinators, consumers, and predators, which collectively maintain healthy communities and ecosystem integrity. Several examples in this review demonstrate evidence of the negative impacts of systemic insecticides on decomposition, nutrient cycling, soil respiration, and invertebrate populations valued by humans. Invertebrates, particularly earthworms that are important for soil processes, wild and domestic insect pollinators which are important for plant and crop production, and several freshwater taxa which are involved in aquatic nutrient cycling, were all found to be highly susceptible to lethal and sublethal effects of neonicotinoids and/or fipronil at environmentally relevant concentrations. By contrast, most microbes and fish do not appear to be as sensitive under normal exposure scenarios, though the effects on fish may be important in certain realms such as combined fish-rice farming systems and through food chain effects. We highlight the economic and cultural concerns around agriculture and aquaculture production and the role these insecticides may have in threatening food security. Overall, we recommend improved sustainable agricultural practices that restrict systemic insecticide use to maintain and support several ecosystem services that humans fundamentally depend on.

Virus-driven nitrogen cycling enhances phytoplankton growth

Viruses have been implicated as major players in aquatic nutrient cycling, yet few data exist to quantify their significance. To determine the effect of viruses on ammonium regener- ation by bacteria, experiments were carried out in the oligotrophic Indian Ocean and productive False Creek, Vancouver, Canada. Bacteria were concentrated and then diluted with virus-free water to reduce virus abundance, or with virus-replete water to restore natural virus abundances. Virus-replete treatments showed increased ammonium concentrations compared to treatments with viruses removed (differences of 0.287 ± 0.14 and 1.44 ± 0.73 µmol l �1 , mean ± SD, in the Indian Ocean and False Creek, respectively). Bacterial abundances were lower, while phyto- plankton abundances and chlorophyll a (chl a) concentrations were greater in the virus-replete treatments, consistent with the increased availability of ammonium in the presence of viruses. These data demonstrate that viral lysis leads to ammonium production, likely through the libera- tion of dissolved organic N that is remineralised by uninfected bacteria. In turn, the released ammonium fuels primary production. These results show that viruses play a critical role in the marine N cycle, and suggest that viral lysis likely supplies a significant portion of the global N requirements of phytoplankton.

Evaluation of Biological Characteristics of Bacteria Contributing to Biofilm Formation

Biofilm-associated microorganisms play crucial roles in terrestrial and aquatic nutrient cycling and in the biodegradation of environmental pollutants. Biofilm formation was determined for a total of 18 bacterial isolates obtained from the biofilms of wastewater treatment systems and of little carpolite in soil. Among these isolates, seven showed strong biofilm-forming capacity. The phylogenetic affiliation of the isolates showing high biofilm formation capacity was determined through 16S rDNA sequencing and the isolates were grouped into 7 bacterial species including Pseudomonas sp., Pseudomonas putida, Aeromonas caviae, Bacillus cereus, Pseudomonas plecoglossicida, Aeromonas hydrophila, and Comamonas testosteroni. The biofilm-forming capacity was closely related with flagella, exopolysaccharide, and extracellular protein. According to the coefficient of determination, the relative importance of the five biological characteristics to biofilm formation was, in order from greatest to least, exopolysaccharide > flagella >N-acyl-homoserine lactones (AHLs) signaling molecules > extracellular protein > swarming motility.

CO 2 Production as an Indicator of Biofilm Metabolism

Biofilms are important in aquatic nutrient cycling and microbial proliferation. In these structures, nutrients like carbon are channeled into the production of extracellular polymeric substances or cell division; both are vital for microbial survival and propagation. The aim of this study was to assess carbon channeling into cellular or noncellular fractions in biofilms. Growing in tubular reactors, biofilms of our model strain Pseudomonas sp. strain CT07 produced cells to the planktonic phase from the early stages of biofilm development, reaching pseudo steady state with a consistent yield of approximately 10(7) cells.cm(-2).h(-1) within 72 h. Total direct counts and image analysis showed that most of the converted carbon occurred in the noncellular fraction, with the released and sessile cells accounting for <10% and <2% of inflowing carbon, respectively. A CO(2) evolution measurement system (CEMS) that monitored CO(2) in the gas phase was developed to perform a complete carbon balance across the biofilm. The measurement system was able to determine whole-biofilm CO(2) production rates in real time and showed that gaseous CO(2) production accounted for 25% of inflowing carbon. In addition, the CEMS made it possible to measure biofilm response to changing environmental conditions; changes in temperature or inflowing carbon concentration were followed by a rapid response in biofilm metabolism and the establishment of new steady-state conditions.

Are phytoplankton population density maxima predictable through analysis of host and viral genomic DNA content?

Phytoplankton:virus interactions are important factors in aquatic nutrient cycling and community succession. The number of viral progeny resulting from an infection of a cell critically influences the propagation of infection and concomitantly the dynamics of phytoplankton populations. Host nucleotide content may be the resource limiting viral particle assembly. We present evidence for a strong linear correlation between measured viral burst sizes and viral burst sizes predicted from the host DNA content divided by the viral genome size, across a diversity of phytoplankton:viral pairs. An analysis of genome sizes therefore supports predictions of taxon-specific phytoplankton population density thresholds beyond which viral proliferation can trim populations or terminate phytoplankton blooms. We present corollaries showing that host:virus interactions may place evolutionary pressure towards genome reduction of both phytoplankton hosts and their viruses.