The southwest of the Brazilian Pantanal contains areas formed by calcareous sediments, which give this hydromorphic environment special characteristics in the formation of soils such as Phaeozems, Chernozems and Gleysols. These soils have a dark surface horizon, enriched with organic matter, high natural fertility in the sorption complex and high clay activity. These soils are important because they store large amounts of organic carbon and can be used in carbon sequestration and greenhouse gases studies. However, despite their abundance in the Pantanal region and importance, these soils are few studied. Thus, our study aimed to characterize the morphology, physical, and chemical attributes of black soils in this region, identifying the main mechanisms of organic carbon and secondary carbonate accumulation. Three profiles located in the municipality of Corumbá-MS were studied, namely Phaeozem (profiles P1), Gleysol (profile P2) and Chernozem (profiles P3). In all profiles, high concentrations of Ca2+, Mg2+ and K+ elements were observed, mainly derived from the sediments of the Serra da Bodoquena and the Urucum-Amolar residual plateau, ion transport fluxes and secondary carbonate dissolution. The preservation of these elements and 2:1 clays is closely linked to the rainfall dynamics of the region, alternating between floods and droughts. The high 2:1 clays and exchangeable Ca2+ benefits the stabilization of organic carbon by means of organic–mineral interactions and promote the increase of humin content. In Phaeozem and Chernozem, the highest levels of secondary carbonates were observed at the top of the B horizons of these soils, where the pressure of CO2 is lower. Being a lowland area under the direct influence of flooding, the development of secondary carbonates is limited in the B horizons of the Gleysol, where access to the water table and root activity at depth increases the CO2 pressure and hinders the re-precipitation of carbonates in this soil, precipitating in the capillary bangs and in the upper zone (surface horizons).
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