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  • New
  • Research Article
  • 10.22146/ijbiotech.107035
Anti‐inflammatory properties of conditioned medium from human Wharton’s jelly mesenchymal stem cells
  • Dec 31, 2025
  • Indonesian Journal of Biotechnology
  • Rizal Azis + 7 more

Acute respiratory distress syndrome (ARDS) is a critical respiratory dysfunction triggered by intense in‐ flammation, microvascular damage, and increased epithelial and pulmonary vascular permeability. Human Wharton’s jelly mesenchymal stem cells (hWJMSCs) possess regenerative and anti‐inflammatory activities through the cytokines, chemokines, and growth factor secretion. The development of anti‐inflammatory agents derived from hWJMSCs has become one of the therapeutic solutions. Instead of direct cell use of hWJMSCs, their conditioned medium (CM) provides a cell‐free approach that delivers bioactive factors while minimizing the risks associated with stem cell transplantation. This study aims to measure the levels of vascular endothelial growth factor‐α (VEGF‐α), epidermal growth factor‐β (EGF‐β), interleukin‐10 (IL‐10), and hepatocyte growth factor (HGF) in CM‐hWJMSCs under non‐starvation and starvation conditions (24, 48 and 72 hours) using ELISA. The anti‐inflammatory potential of these factors was then analyzed through molecular docking with pro‐inflammatory cytokines. VEGF‐α, EGF‐β, IL‐10 and HGF levels were measured across all conditions. VEGF‐α ranged from 2590.37 to 3613.92 ng/mg protein; EGF‐β 347.01–504.43 ng/mg; IL‐10 302.59–729.28 pg/mg; and HGF 1747.20–2903.52 ng/mg. The molecular docking revealed strong binding between VEGF‐α, EGF‐β, IL‐10 and HGF with pro‐inflammatory cytokines, namely IL‐1β, IL‐6 and TNF‐α. VEGF‐α had the strongest bond with TNF‐α (–1162.3 kJ/mol), while EGF‐β formed the most hydrophobic and hydrogen interactions. The findings suggest that CM‐hWJMSCs, enriched with anti‐inflammatory and regenerative cytokines, may serve as a promising candidate for modulating the inflammatory pathways involved in ARDS pathogenesis. Longer starvation increased the secretion of VEGF‐α, EGF‐β, IL‐10 and HGF. These factors are known to promote angiogenesis, regulate immune responses, and protect against epithelial injury, thereby supporting the anti‐inflammatory and regenerative potential of hWJMSCs‐CM for ARDS therapy.

  • New
  • Research Article
  • 10.22146/ijbiotech.109941
Enzyme and hormone activities related to phosphorus uptake limitation in oil palm (Elaeis guineensis Jacq.)
  • Dec 31, 2025
  • Indonesian Journal of Biotechnology
  • Sigit Dwi Maryanto + 9 more

Phosphorus (P) is an essential element for oil palm growth and development. Acid phosphatase (Apase) and Pti‐interacting serine/threonine kinase are two enzymes which enzymes confirmed to be related to P‐uptake in oil palm, therefore their activities in oil palm treated with P‐limitation need to be quantified. Acid phosphatase is believed to be induced by P‐deprivation. Conversely, the Pto‐interaction (Pti) serine/threonine kinase activity is associated with abiotic stress. The aim of this study was to quantify of activities of two selected enzymes and phytohormone content in oil palm‐clones in the P‐limitation condition. Two oil palms genotypes were treated with three P dosages i.e. 0% (v/v), 4.67% (v/v), and 14.02% (v/v) represented as starvation, deficiency, and optimum condition, respectively. The activity of these two enzymes was quantified in mitochondria and cytoplasm using spectrophotometry and modified dot‐blot methods, while abscisic acid, indole acetic acid and gibberellic acid content was quantified using ultra performance liquid chromatography (UPLC). The result showed that the Apase activity in P‐optimum was higher than starvation and deficiency in leaf and root tissues in both genotypes, whereas Pti serine/threonine kinase activity was higher in prolific than non‐prolific genotypes in P‐deficient dosage. Furthermore, abscisic acid content was higher in prolific than non‐prolific genotypes in starvation and deficient, whereas other hormone contents were similar. Association study showed that prolific was separated with non‐prolific ones at different doses of P. Finally, the prolific genotype is more adaptable with P deficiency.

  • New
  • Research Article
  • 10.22146/ijbiotech.111727
Orchid‐associated endophytic Bacillus mediates Fusarium suppression and promotes in vitro regeneration of banana plantlets via culture supernatant
  • Dec 31, 2025
  • Indonesian Journal of Biotechnology
  • Aries Bagus Sasongko + 3 more

The application of Fusarium‐antagonistic endophytic bacteria with plant growth‐promoting traits offers an effective method to enhance the success of banana plantlet tissue culture while combating Fusarium wilt disease caused by Fusarium oxysporum f.sp. cubense Tropical Race 4 (FocTR4) (VCG 01213). This study evaluates the endophytic bacterium AP3311, isolated from healthy banana roots in direct association with orchid roots. AP3311 exhibited strong antagonism toward FocTR4, hyphal colonization ability, and multiple growth‐promoting activities, including phosphate solubilization, nitrogen fixation and auxin production. 16S rRNA gene sequencing identified that AP3311 belongs to the genus Bacillus, while metabarcoding analysis revealed that Bacillus species dominate the root microbiomes of both bananas and orchids. The bacterial supernatants stimulated root development and leaf growth in vitro. Metabolomic profiling indicated that antimicrobial compounds, together with plant growth regulators, promoted both root and shoot growth. Overall, the research demonstrates that Bacillus sp. AP3311 and its supernatants are valuable components in banana tissue culture, providing the dual benefits of plant growth promotion and effective disease control.

  • New
  • Research Article
  • 10.22146/ijbiotech.109403
Metagenomic detection and biochemical characterization of a Streptomyces tyrosinase from Mesopotamian marsh soils: Implications for phenolic turnover
  • Dec 31, 2025
  • Indonesian Journal of Biotechnology
  • Nadia Altaee + 2 more

Wetland soils in southern Iraq store large carbon pools and contain abundant phenolics that can modulate microbial decomposition. In this study, we investigate bacterial tyrosinases (TYRs), type III copper enzymes that oxidize mono‐ and diphenols, in Mesopotamian marsh soils using a combined metagenomic and biochemical approach. Degenerate primers targeting conserved CuA/CuB motifs recovered diverse partial tyr fragments affiliated with Proteobacteria and Actinobacteria. From one sample, we amplified the full melC operon from a Streptomyces lineage; expressed the tyrosinase in E. coli; and purified the enzyme (SZTYR). SZTYR displayed an alkaline pH optimum (~9); retained activity up to ~70 °C; and preferentially oxidized diphenols (e.g., L‐DOPA, dopamine) over monophenols. The enzyme also acted on phenolics relevant to peat/wetland matrices (e.g., caffeic, protocatechuic, p‐coumaric and gallic acids). The results document TYR genetic diversity in Iraqi marsh soils and establish the biochemical profile of an alkaline‐adapted Streptomyces tyrosinase. While ecosystem‐level impacts were not measured, our findings motivate field‐scale assessments of in situ TYR activity, phenolic pools and oxygen/pH dynamics to evaluate potential consequences for phenolic turnover and carbon cycling in aridifying wetlands.

  • New
  • Research Article
  • 10.22146/ijbiotech.111102
Evaluation of synthetic‐gene recombinant LipL32 antigen for IgM ELISA detection of Leptospira infection
  • Dec 31, 2025
  • Indonesian Journal of Biotechnology
  • Dyah Widiastuti + 5 more

Leptospirosis presents with nonspecific clinical features and requires time‐consuming laboratory tests for gold standard diagnosis. This study aims to design and characterize the recombinant LipL32 from synthetic gene and assess its performance as an antigen for detecting leptospirosis. The antigen was developed by cloning the LipL32 gene conserved portion of Leptospira interrogans serovar Icterohaemorrhagiae strain Langkawi. The immunoinformatic was used to characterize the developed rLipL32. Western blot results using anti‐histidine revealed a band of rLipL32 protein at ~40 kDa. Subsequently, it was used to examine the IgM antibody on human sera by using ELISA. The IgM‐LipL32 ELISA was evaluated using 67‐positive and 25‐negative sera and compared with a commercial ELISA. With a cut‐off value of 0.8, it showed 85.7% sensitivity, 83.3% specificity, a 48% positive prediction value (PPV), and 97% negative prediction value (NPV), indicating modest performance compared to existing commercial kits. The rLipL32 is a potential antigen for detecting IgM using ELISA; however, for use in low incidence areas, a confirmation test is crucial.

  • Addendum
  • 10.22146/ijbiotech.113440
Corrigendum to: Antibacterial activity of mycelial extract from a local fungus, Sclerotium rolfsii [Indonesian Journal of Biotechnology, 30, 3, 2025, DOI: 10.22146/ijbiotech.108408
  • Dec 12, 2025
  • Indonesian Journal of Biotechnology
  • Muhandinni Zahra + 3 more

Author Correction:This article has been updated to include I Nyoman Pugeg Aryantha as an additional corresponding author. The authorship and correspondence information in the online version have been corrected accordingly.This correction does not affect the results, analysis, or conclusions of the original article.

  • Research Article
  • 10.22146/ijbiotech.108853
Extracellular alpha‐amylase from halophilic bacteria Marinobacter sp. LES TG5: Isolation, optimization, and characterization
  • Sep 30, 2025
  • Indonesian Journal of Biotechnology
  • I Putu Parwata + 1 more

The growing demand for stable and effective enzymes requires the discovery of novel microbial producers. Alpha‐amylase is an enzyme in high demand by various industries; however, the discovery of novel and stable alpha‐amylase producers remains limited. This study aims to isolate, optimize, and characterize extracellular alpha‐amylase from halophilic bacteria Marinobacter sp. LES TG5. Bacteria were isolated from saltwater and soil samples collected from traditional salt ponds in Les Village, Bali, Indonesia. Initial screening on starch agar yielded several amylase‐producing colonies, and subsequent spectrophotometric assays identified one promising isolate (LES TG5), which demonstrated an initial activity of 0.63 U/mL. The production of amylase was significantly enhanced by a multi‐stage optimization process. This involved first identifying optimal carbon and nitrogen sources, followed by a one‐variable‐at‐a‐time approach to determine the ideal nutrient levels, salt concentration, and incubation time. This optimization led to an 11‐fold increase in activity, from 0.63 U/mL to 6.99 U/mL, achieved with a medium containing 2.4% (w/v) nutrient broth, 0.4% (w/v) maltose, and 3% (w/v) NaCl with an incubation time of 22 hours. Enzyme characterization revealed optimal amylase activity at pH 7, 55 °C, and 3% (w/v) NaCl. While Ca2+ and Mg2+ had no effect on amylase activity, Pb2+, Fe2+, Sn2+, and Al3+ significantly reduced it. Importantly, the amylase demonstrated outstanding stability in organic solvents such as methanol, ethanol, and n‐hexane, suggesting its potential as a biocatalyst for chemical synthesis in non‐aqueous systems. Furthermore, its notable stability against surfactants and detergents highlights its promise as an additive in cleaning product formulations.

  • Research Article
  • 10.22146/ijbiotech.108408
Antibacterial activity of mycelial extract from a local fungus, Sclerotium rolfsii
  • Sep 30, 2025
  • Indonesian Journal of Biotechnology
  • Muhandinni Zahra + 3 more

Mycelium‐to‐sclerotium differentiation in fungi involves not only morphological but also biochemical changes throughout the process, which may contribute to their persistence and be a possible source of bioactive compounds. This study aims to evaluate the antibacterial activity and identify the bioactive compound in the local isolate Sclerotium rolfsii. Fungal culture was grown in media containing potato extract (20 g/L), dextrose (20 g/L), and peptone (5 g/L) for 27 days under static conditions at room temperature. Mycelium, sclerotium and filtrate were collected every three days and extracted with methanol, followed by evaporation and antibacterial screening. Significant activity was observed in day three of mycelial extract, which showed morphology of initial sclerotium formation (MIC 0.39 mg/mL) against B. subtilis and E. coli. An improved extraction method (sequential extraction) was employed for mycelial sample on the third day. N‐hexane and ethyl acetate extracts exhibited stronger activities (0.20 mg/mL). Ergosterol was identified after TLC‐bioautography, radial chromatography, and NMR elucidation analysis. S. rolfsii mycelium (third day‐sclerotial initiation) was found to contain ergosterol, demonstrating strong defense against bacteria, and possibly related to sclerotium‐differentiation metabolites. These findings may pave the way for more extensive studies of sclerotium differentiation as an interesting phenomenon of fungal development and bioactive compound origins.

  • Research Article
  • 10.22146/ijbiotech.107036
Biodegradable plant pots made from dried banana pseudo‐stems enriched with a Bacillus sp.‐biochar composite as an eco‐friendly alternative to plastic pots
  • Sep 30, 2025
  • Indonesian Journal of Biotechnology
  • Parisatcha Sangsuwan + 2 more

Agricultural plastic waste is a major environmental pollutant due to its non‐biodegradable nature. This study discusses the production of biodegradable pots (bio‐pots) using a biochar composed of banana pseudo‐stems and Bacillus sp. The isolated Bacillus sp. produced indole‐3‐acetic acid (IAA), solubilized potassium and phosphate, and secreted siderophores immobilized in banana pseudo‐stem biochar. X‐ray diffraction analysis revealed CaCO3 and KCl as the major elements, aside from carbon, released to the soil. Bio‐pots were made from banana pseudo‐stem biochar mixed with a Bacillus sp.–biochar composite at various formulations: 0%, 1%, 3%, 5%, and 10%. Mechanical testing indicated that the porous structure of the biochar contributed to low pot density and tensile strength. Moreover, the air‐filled spaces within the biochar enhanced water absorption, correlating with the amount of biochar used. Marigolds were cultivated outdoors in the bio‐pots to assess growth and yield. Our findings showed that those grown in biopot‐4 (10%) displayed improved growth and yield compared to the control group (grown in the ground). After 10 weeks, the control plants became infected with fungi and aphids, whereas those grown in biopot‐4 remained unaffected. In summary, bio‐pots incorporating 10% Bacillus sp.–biochar are eco‐friendly, reducing the need for chemical fertilizers, fungicides, and insecticides, while contributing to environmental sustainability. Moreover, the combination of biochar and Bacillus sp. is more effective than an unmixed form, since Bacillus sp. can inhabit and propagate in biochar pores if the conditions are otherwise unsuitable for growth.

  • Research Article
  • 10.22146/ijbiotech.107382
Network pharmacology‐based exploration of gut microbiota‐derived metabolites for type‐2 diabetes
  • Sep 30, 2025
  • Indonesian Journal of Biotechnology
  • Nadia Widjaja + 3 more

Probiotics confer health benefits and have been investigated for their potential therapeutic properties in type‐2 diabetes (T2D) treatment. This study employs a network pharmacology approach to explore gut microbiota‐derived metabolites that potentially alleviate T2D. Several strains and species of gut microbiota were identified that may produce metabolites with therapeutic potential for T2D. Interestingly, quercetin produced by Bacteroides uniformis and daidzein produced by Bifidobacterium adolescentis and Bifidobacterium breve have been studied for their antidiabetic effects. Using a network pharmacology approach, it was found that quercetin may target AKT1 and EGFR, critical proteins involved in insulin signaling pathways related to T2D. Additionally, 10‐oxo‐11‐octadecenoic acid produced by Lactobacillus plantarum and 10‐keto‐12Z‐octadecenoic acid produced by Lactobacillus paracasei were found to target PPARG, a gene regulating insulin signaling. These findings were further validated by the molecular docking analysis, which showed suitable to satisfactory binding strengths.