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Potential of Mean Force of Short‐Chain Surface Adsorption using Non‐Uniform Sampling Windows for Optimal Computational Efficiency

AbstractFree energy calculation in molecular simulation is an computationally expensive process. Umbrella sampling (US) is a go‐to method for obtaining the potential of mean force (PMF) along a reaction coordinate. Its computational cost increases drastically as the molecular system gets more complex. For many polymeric and biomolecular systems, adequately sampling all configurational degrees of freedom is computationally prohibitive. Using the adsorption of a short‐chain methylcellulose on a cellulose crystalline surface as the test case, this study shows that the sampling time required for reliable results is much higher than typical choices made in the literature. The accuracy of the PMF profile is strongly affected by sampling inadequacy in a few regions along the reaction coordinate. Non‐uniform windows and sampling parameters are proposed to enhance the sampling in difficult regions. Sampling windows that vary with the local PMF steepness are allocated with a new algorithm. Parameters in this algorithm are optimized for best sampling efficiency. It is demonstrated that significantly less computer time would be required to achieve the same sampling accuracy if computational resources are optimally distributed along the reaction coordinate.This article is protected by copyright. All rights reserved.

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Improvement of The Mathematical Model for Quality Assurance in The Determination of Kinetic Parameters of Thermal Degradation of Polypropylene Through Thermogravimetric Analysis

AbstractA robust mathematical treatment of the Ozawa/Flynn/Wall isoconversion method is conducted to determine the value and uncertainty of the activation energy and pre‐exponential factor for the degradation of polypropylene (PP) in thermogravimetric analysis (TGA) experiments at constant heating rates. In the present work are employed mathematical models and uncertainty propagation techniques, based on the Guide to the Expression of Uncertainty in Measurement (GUM) to estimate the Arrhenius activation energy and preexponential factor due the uncertainty of the integration constant b, both in a linear and a third‐degree reciprocal polynomial model with respect to x. The error arising from Doyle's linear approximation in the improper integral of temperature in the Arrhenius equation is examined, and an alternative method is proposed to correct this error, reducing it to 0.032% in the working interval of ̶ 200 ≤ x ≤ ̶ 15, where x = ̶ E/RT. Given the increased sensitivity of modern TGA equipment, these improvements are considered essential for obtaining reliable results that align with experimental precision limits compared to previous works. Thus, this allows for the development of an enhanced quality assurance framework by providing a more robust uncertainty estimation and better understanding of the method, leading to more reliable results. Moreover, this approach can be applied to other similar polymer systems.This article is protected by copyright. All rights reserved

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Effectiveness of DPD Simulations to Predict the Dynamics of Polymer Chains in Solutions at Equilibrium and Steady Shear Flows

AbstractThe suitability of dissipative particle dynamics simulations is investigated to predict the dynamics of polymer chains in dilute polymer solutions. The authors find that the predictions depend on the value of the repulsive parameter for bead‐bead pairwise interactions used in the DPD simulations (aij). For all systems, the chain sizes and the relaxation time spectrum are analyzed. For aij = 0, theta solvent behaviour is obtained, whereas the dynamics at equilibrium agrees well with the predictions of the Zimm model. For higher values of aij, the static properties of the chain show good solvent behaviour. However, the scaling laws for the chain dynamics at equilibrium show wide variations, with consistent results obtained only at an intermediate value of aij = 25. At higher values of the repulsive parameter (aij ⩾ 25), the simulations are also able to predict the abrupt cut‐off in the relaxation spectrum, which has been observed earlier in experiments of dilute solutions. To verify further, the chain dynamics in shear flow using DPD simulations is studied. Specifically, the variation of the chain is analysed stretch and end‐over‐end tumbling with shear rates. Overall, the trends obtained from DPD simulations agree well with those observed in earlier BD simulations.

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