Abstract

Here I present technical details on the software package PMR2, which is the software running the CellML and Physiome Project model repositories. In particular, the use of mercurial repositories to define workspaces for collaborative model development, creating modular hierarchies of embedded workspaces, and defining exposures as a means to provide permanent links to specific revisions of model workspaces. I also briefly mention the use of OpenCMISS to link CellML models into large scale, spatially distributed field modeling and simulation.

Highlights

  • Build up a multiscale model of the renal nephron – ion transporters, cellular models, segmental models, whole nephron

  • Workspaces can be embedded at a specific revision or set to track the most recent revision of the source workspace

  • Changes made to the source workspace will not affect the embedding workspace until the author explicitly chooses to update the embedded workspace

Read more

Summary

An example from computational physiology

Build up a multiscale model of the renal nephron – ion transporters, cellular models, segmental models, whole nephron.

Embedded workspaces
Versioning embedded workspaces
EEppiEtihpEtheiptlehiialteihlaleCilalCeilaleClllCel lel ll OpenCMISS
Full Text
Paper version not known

Talk to us

Join us for a 30 min session where you can share your feedback and ask us any queries you have

Schedule a call

Disclaimer: All third-party content on this website/platform is and will remain the property of their respective owners and is provided on "as is" basis without any warranties, express or implied. Use of third-party content does not indicate any affiliation, sponsorship with or endorsement by them. Any references to third-party content is to identify the corresponding services and shall be considered fair use under The CopyrightLaw.