Abstract

The receptor for advanced glycation end-products (RAGE) is involved in the onset and progression of several inflammatory diseases. The RAGE primary transcript undergoes numerous alternative splicing (AS) events, some of which are species-specific. Here, we characterize the mouse-specific mRAGE_v4 splice variant, which is conserved in rodents and absent in primates. mRAGE_v4 derives from exon 9 skipping and encodes a receptor (M-RAGE) that lacks 9 amino acids between the transmembrane and the immunoglobulin (Ig) domains. RNA-Seq data confirm that in mouse lung mRAGE_v4 is the most abundant RAGE mRNA isoform after mRAGE, which codes for full-length RAGE (FL-RAGE), while in heart all RAGE variants are almost undetectable. The proteins M-RAGE and FL-RAGE are roughly equally abundant in mouse lung. Contrary to FL-RAGE, M-RAGE is extremely resistant to shedding because it lacks the peptide motif recognized by both ADAM10 and MMP9, and does not contribute significantly to soluble cRAGE formation. Thus, a cassette exon in RAGE corresponds to a specific function of the RAGE protein–the ability to be shed. Given the differences in RAGE AS variants between rodents and humans, caution is due in the interpretation of results obtained in mouse models of RAGE-dependent human pathologies.

Highlights

  • The receptor for advanced glycation end-products (RAGE) is a pattern recognition receptor (PRR) that binds numerous ligands, including advanced glycation end-products (AGE), several S100/calgranulins, amyloid-beta peptide, High Mobility Group Box 1 protein (HMGB1), the PLOS ONE | DOI:10.1371/journal.pone.0153832 September 21, 2016Characterization of the Mouse-Specific RAGE_v4 Isoform supported by grant GR-2010-2312693 from the Italian Ministry of Health

  • Expression patterns of alternatively spliced mRNA isoforms in the mouse We explored by RNA-Seq analysis the relative expression of all coding RAGE splice variants across embryonic, post-natal and adult mouse heart and lung samples

  • It is not possible to define the relative amount for each RAGE splice variant in both embryonic/postnatal (Fig 1A) andadult (Fig 1B) hearts because the expression is weak (FPKM < 6) and only detectable with low confidence for some samples

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Summary

Introduction

The receptor for advanced glycation end-products (RAGE) is a pattern recognition receptor (PRR) that binds numerous ligands, including advanced glycation end-products (AGE), several S100/calgranulins, amyloid-beta peptide, High Mobility Group Box 1 protein (HMGB1), the PLOS ONE | DOI:10.1371/journal.pone.0153832 September 21, 2016Characterization of the Mouse-Specific RAGE_v4 Isoform supported by grant GR-2010-2312693 from the Italian Ministry of Health. The receptor for advanced glycation end-products (RAGE) is a pattern recognition receptor (PRR) that binds numerous ligands, including advanced glycation end-products (AGE), several S100/calgranulins, amyloid-beta peptide, High Mobility Group Box 1 protein (HMGB1), the PLOS ONE | DOI:10.1371/journal.pone.0153832. Characterization of the Mouse-Specific RAGE_v4 Isoform supported by grant GR-2010-2312693 from the Italian Ministry of Health. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript

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