Abstract

Stress granules (SGs) are phase-separated, membraneless, cytoplasmic ribonucleoprotein (RNP) assemblies whose primary function is to promote cell survival by condensing translationally stalled mRNAs, ribosomal components, translation initiation factors, and RNA-binding proteins (RBPs). While the protein composition and the function of proteins in the compartmentalization and the dynamics of assembly and disassembly of SGs has been a matter of study for several years, the role of RNA in these structures had remained largely unknown. RNA species are, however, not passive members of RNA granules in that RNA by itself can form homo and heterotypic interactions with other RNA molecules leading to phase separation and nucleation of RNA granules. RNA can also function as molecular scaffolds recruiting multivalent RBPs and their interactors to form higher-order structures. With the development of SG purification techniques coupled to RNA-seq, the transcriptomic landscape of SGs is becoming increasingly understood, revealing the enormous potential of RNA to guide the assembly and disassembly of these transient organelles. SGs are not only formed under acute stress conditions but also in response to different diseases such as viral infections, cancer, and neurodegeneration. Importantly, these granules are increasingly being recognized as potential precursors of pathological aggregates in neurodegenerative diseases. In this review, we examine the current evidence in support of RNA playing a significant role in the formation of SGs and explore the concept of SGs as therapeutic targets.

Highlights

  • Stress granules (SGs) have been described as a triage for mRNA during cellular stress where they either store translationally silent mRNA, transfer mRNA transcripts to processing bodies (p-bodies) where they will be degraded, or transfer mRNA back into polysomes for translation (Kedersha et al, 2000, 2002; Anderson and Kedersha, 2008)

  • Stress granules are generally found within the cytoplasm of the cell, but it has become increasingly recognized that the specific compartmentalization of SGs in the cytoplasm may play a critical role in the stress response

  • Tauber et al (2020b) have classified all the SG proteins into five groups: (a) kinetic RNA condensers, proteins that increase the rate of trans RNA–RNA interaction formation; (b) thermodynamic RNA condensers, proteins that reduce G of RNP granulation through RNA binding; (c) kinetic RNA decondensers, proteins that reduce activation energy barriers and decrease the valency of RNAs to promote the dissociation of cis or trans RNA interactions and accelerate RNA refolding; (d) thermodynamic RNA decondensers proteins that bind RNA with high affinity to restrict the sites or conformations that are available for trans RNA–RNA interactions; and (e) client/unknown proteins

Read more

Summary

The Integral Role of RNA in Stress Granule Formation and Function

Stress granules (SGs) are phase-separated, membraneless, cytoplasmic ribonucleoprotein (RNP) assemblies whose primary function is to promote cell survival by condensing translationally stalled mRNAs, ribosomal components, translation initiation factors, and RNA-binding proteins (RBPs). While the protein composition and the function of proteins in the compartmentalization and the dynamics of assembly and disassembly of SGs has been a matter of study for several years, the role of RNA in these structures had remained largely unknown. SGs are formed under acute stress conditions and in response to different diseases such as viral infections, cancer, and neurodegeneration. These granules are increasingly being recognized as potential precursors of pathological aggregates in neurodegenerative diseases. We examine the current evidence in support of RNA playing a significant role in the formation of SGs and explore the concept of SGs as therapeutic targets

INTRODUCTION
Stress Granule Dynamics
Stress Granule Composition
Stress Granule Compartmentalization
RNA IN THE FORMATION AND FUNCTION OF STRESS GRANULES
The Dynamic Nature of RNA
RNA Induces Phase Transitions
RNA Is Critical for Ribonucleoprotein Granule Assembly
RNA SPECIES IN STRESS GRANULES
Transcriptomics of Stress Granules
RNA Modifications in Stress Granule Formation
Viral Infection
Neurodegenerative Diseases
Findings
DISCUSSION

Talk to us

Join us for a 30 min session where you can share your feedback and ask us any queries you have

Schedule a call

Disclaimer: All third-party content on this website/platform is and will remain the property of their respective owners and is provided on "as is" basis without any warranties, express or implied. Use of third-party content does not indicate any affiliation, sponsorship with or endorsement by them. Any references to third-party content is to identify the corresponding services and shall be considered fair use under The CopyrightLaw.