Abstract

Epitranscriptomics has gained ground in recent years, especially after the advent of techniques for accurately studying these mechanisms. Among all modifications occurring in RNA molecules, N6-methyladenosine (m6A) is the most frequent, especially among mRNAs. m6A has been demonstrated to play important roles in many physiological processes and several disease states, including various cancer models (from solid to liquid tumors). Tumor cells’ epitranscriptome is indeed disrupted in a way to promote cancer-prone features, by means of up/downregulating m6A-related players: the so-called writers, readers and erasers. These proteins modulate m6A establishment, removal and determine mRNAs fate, acting in a context-dependent manner, so that a single player may act as an oncogenic signal in one tumor model (methyltransferase like 3 (METTL3) in lung cancer) and as a tumor suppressor in another context (METTL3 in glioblastoma). Despite recent advances, however, little attention has been directed towards urological cancer. By means of a thorough analysis of the publicly available TCGA (The Cancer Genome Atlas) database, we disclosed the most relevant players in four major urogenital neoplasms—kidney, bladder, prostate and testicular cancer—for prognostic, subtype discrimination and survival purposes. In all tumor models assessed, the most promising player was shown to be Vir like m6A methyltransferase associated (VIRMA), which could constitute a potential target for personalized therapies.

Highlights

  • Cancer Biology and Epigenetics Group, Research Center of Portuguese Oncology Institute of Porto (GEBC CI-IPOP), R

  • MRNA expression levels of Vir like m6A methyltransferase associated (VIRMA) and YTHDF3, and the writer METTL4, the eraser ALKBH5 and the reader YTHDC1, were significantly higher in SEs compared to NSTs (p < 0.0001 for all)

  • YTHDF3 compared to low grade tumors (p = 0.003, p < 0.001 and p = 0.041, respectively), but the discriminative power was limited, the best disclosed by METTL4 (AUC 0.80)

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Summary

RNA Modifications in Brief

In the past few years, RNA modifications have caught the scientific community’s attention. 2 and 3; YTHDC 1 and 2—YTH domain-containing proteins 1 and 2; eIF3—eukaryotic initiation factor 3; HNRNPC—heterogeneous nuclear ribonucleoprotein C; HNRNPA2B1—heterogeneous nuclear ribonucleoprotein A2-B1; m6 A—N6-methyladenosine In this vein, m6 A has been explored in many perspectives and different contexts in the past few years, having been shown to play important roles in very diverse biological mechanisms and related diseases, including metabolism/obesity, circadian rhythm, immune response, viral replication, gametogenesis/infertility, embryogenesis/stem cell differentiation, neurologic development/deficits, and in cancer [3,16,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39].

Methodology
Prostate Cancer
Testicular Cancer
Kidney Cancer
Bladder Cancer
Findings
Discussion
Full Text
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