The Dynamic UPR Rheostat Orchestrates Single-Cell Plasticity in Glioblastoma.
Glioblastoma (GBM) adapts to microenvironmental stress through the unfolded protein response (UPR), yet whether the three canonical arms IRE1/XBP1, ATF6, and PERK operate as a graded control system at single-cell resolution remains unclear. We reanalyzed publicly available scRNA-seq datasets spanning discovery (n = 871 cells) and validation cohorts (n = 11,877 cells) to quantify arm-specific activities and their coordination across tumor cell states and pseudotime. We introduce arm-resolved metrics, including a Rheostat Index (per-cell dispersion of arm scores) and balance (normalized Shannon entropy), and map dynamic dominance switching (early ATF6 → late IRE1; rare PERK dominance) along lineage trajectories. IRE1 and ATF6 consistently exhibit tight coupling, whereas PERK remains semi-independent, indicating an adaptive division of labor. Rheostat tuning is associated with hypoxia and glycolytic programs and reorganizes across platforms (SMART-seq, 10x) and datasets. To minimize artificial correlations, we employ non-overlapping target sets and validate results using transcription factor activity inference. Statistical analyses prioritize patient-level inference via pseudobulk summaries and random-effects models to mitigate pseudoreplication. Overall, our results support a graded, arm-resolved UPR rheostat that governs GBM cellular plasticity and stress tolerance. These findings motivate therapeutic strategies that rebalance the rheostat attenuating IRE1/ATF6 survival signaling while permitting PERK-mediated death programs rather than globally suppressing the UPR. Our transcriptomic analyses infer arm-resolved coordination; functional validation will require perturbation studies and protein-level readouts.
- Research Article
60
- 10.1194/jlr.m007104
- Feb 1, 2011
- Journal of Lipid Research
Palmitic acid (PA) upregulates oxidized LDL receptor-1 (LOX-1), a scavenger receptor responsible for uptake of oxidized LDL (oxLDL), and enhances oxLDL uptake in macrophages. However, the precise underlying mechanism remains to be elucidated. PA is known to induce endoplasmic reticulum (ER) stress in various cell types. Therefore, we investigated whether ER stress is involved in PA-induced LOX-1 upregulation. PA induced ER stress, as determined by phosphorylation of PERK, eIF2α, and JNK, as well as induction of CHOP in macrophage-like THP-1 cells. Inhibitors [4-phenylbutyric acid (PBA), sodium tauroursodeoxycholate (TUDCA), and salubrinal] and small interfering RNA (siRNA) for the ER stress response decreased PA-induced LOX-1 upregulation. Thapsigargin, an ER stress inducer, upregulated LOX-1, which was decreased by PBA and TUDCA. We next examined whether unsaturated FAs could counteract the effect of PA. Both oleic acid (OA) and linoleic acid (LA) suppressed PA-induced LOX-1. Activation of the ER stress response observed in the PA-treated cells was markedly attenuated when the cells were cotreated with OA or LA. In addition, OA and LA suppressed thapsigargin-induced LOX-1 upregulation with reduced activation of ER stress markers. Our results indicate that activation of ER stress is involved in PA-induced LOX-1 upregulation in macrophages, and that OA and LA inhibit LOX-1 induction through suppression of ER stress.
- Research Article
384
- 10.1194/jlr.r800032-jlr200
- Apr 1, 2009
- Journal of lipid research
Macrophage apoptosis is an important feature of atherosclerotic plaque development. Research directed at understanding the functional consequences of macrophage death in atherosclerosis has revealed opposing roles for apoptosis in atherosclerotic plaque progression. In early lesions, macrophage apoptosis limits lesion cellularity and suppresses plaque progression. In advanced lesions, macrophages apoptosis promotes the development of the necrotic core, a key factor in rendering plaques vulnerable to disruption and in acute lumenal thrombosis. The first section of this review will examine the role of phagocytic clearance of apoptotic macrophages, a process known as efferocytosis, in the dichotomous roles of macrophage apoptosis in early vs. advanced lesions. The second section will focus on the molecular and cellular mechanisms that are thought to govern macrophage death during atherosclerosis. Of particular interest is the complex and coordinated role that the endoplasmic reticulum (ER) stress pathway and pattern recognition receptors (PRRs) may play in triggering macrophage apoptosis.
- Research Article
31
- 10.1016/j.stem.2020.04.016
- May 11, 2020
- Cell Stem Cell
ADAR1-Dependent RNA Editing Promotes MET and iPSC Reprogramming by Alleviating ER Stress.
- Research Article
20
- 10.1074/jbc.m708598200
- Feb 1, 2008
- Journal of Biological Chemistry
Methylenetetrahydrofolate reductase (MTHFR), an enzyme in folate and homocysteine metabolism, influences many cellular processes including methionine and nucleotide synthesis, methylation reactions, and maintenance of homocysteine at nontoxic levels. Mild deficiency of MTHFR is common in many populations and modifies risk for several complex traits including vascular disease, birth defects, and cancer. We recently demonstrated that MTHFR can be up-regulated by NF-kappaB, an important mediator of cell survival that is activated by endoplasmic reticulum (ER) stress. This observation, coupled with the reports that homocysteine can induce ER stress, prompted us to examine the possible regulation of MTHFR by ER stress. We found that several well characterized stress inducers (tunicamycin, thapsigargin, and A23187) as well as homocysteine could increase Mthfr mRNA and protein in Neuro-2a cells. The induction of MTHFR was also observed after overexpression of inositol-requiring enzyme-1 (IRE1) and was inhibited by a dominant-negative mutant of IRE1. Because IRE1 triggers c-Jun signaling, we examined the possible involvement of c-Jun in up-regulation of MTHFR. Transfection of c-Jun and two activators of c-Jun (LiCl and sodium valproate) increased MTHFR expression, whereas a reported inhibitor of c-Jun (SP600125) and a dominant-negative derivative of c-Jun N-terminal kinase-1 reduced MTHFR activation. We conclude that ER stress increases MTHFR expression and that IRE1 and c-Jun mediate this activation. These findings provide a novel mechanism by which the ER can regulate homeostasis and allude to an important role for MTHFR in cell survival.
- Peer Review Report
11
- 10.7554/elife.47084.015
- Jul 23, 2019
Upon detecting endoplasmic reticulum (ER) stress, the unfolded protein response (UPR) orchestrates adaptive cellular changes to reestablish homeostasis. If stress resolution fails, the UPR commits the cell to apoptotic death. Here we show that in hematopoietic cells, including multiple myeloma (MM), lymphoma, and leukemia cell lines, ER stress leads to caspase-mediated cleavage of the key UPR sensor IRE1 within its cytoplasmic linker region, generating a stable IRE1 fragment comprising the ER-lumenal domain and transmembrane segment (LDTM). This cleavage uncouples the stress-sensing and signaling domains of IRE1, attenuating its activation upon ER perturbation. Surprisingly, LDTM exerts negative feedback over apoptotic signaling by inhibiting recruitment of the key proapoptotic protein BAX to mitochondria. Furthermore, ectopic LDTM expression enhances xenograft growth of MM tumors in mice. These results uncover an unexpected mechanism of cross-regulation between the apoptotic caspase machinery and the UPR, which has biologically significant consequences for cell survival under ER stress.
- Research Article
31
- 10.1194/jlr.m004275
- Aug 1, 2010
- Journal of Lipid Research
Obese individuals are both insulin resistant and have high levels of circulating free fatty acids (FFAs). In cell culture, saturated but not unsaturated fatty acids induce endoplasmic reticulum (ER) stress. We hypothesized that chronic exposure to low dose fatty acids would significantly attenuate the acute stress response to a saturated fatty acid challenge and that unsaturated fatty acids (oleate) would be more protective than saturated fatty acids (palmitate). The ER stress response to palmitate was reduced after low dose fatty acid exposure in human hepatoma cells. Palmitate and oleate gave distinctive transcript responses, both acutely and after chronic low dose exposure. Differentially regulated pathways included lipid, cholesterol, fatty acid, and triglyceride metabolism, and IkappaB kinase and nuclear factor kappaB kinase inflammatory cascades. Oleate reduced palmitate-induced changes significantly more than low dose palmitate and completely blocked palmitate-induced phosphoinositide 3 kinase inhibitor (PIK3IP1) as well as induction of GADD45A and B. These changes are predicted to alter the PI3 kinase pathway and the pro-apoptotic p38 MAPK pathway. We recapitulated the oleate response by small interfering RNA-mediated block of PIK3IP1 stimulation with palmitate and significantly protected cells from palmitate-mediated ER stress. We show that transcriptional responses to oleate and palmitate are distinct, broad, and often discordant. We identified several potential candidates that may direct the transcriptional networks and demonstrate that PIK3IP1 partially accounts for the protective effects of oleate.
- Discussion
3
- 10.1053/j.gastro.2014.06.013
- Jun 20, 2014
- Gastroenterology
Details Unfold: The Endoplasmic Reticulum Stress Response in Intestinal Inflammation and Cancer
- Research Article
2
- 10.1016/j.plgene.2023.100421
- Apr 14, 2023
- Plant Gene
Overexpression of type II rice metacaspase, OsMC4, increases endoplasmic reticulum stress tolerance in transgenic rice calli
- Discussion
7
- 10.1016/j.jhep.2010.11.037
- Feb 5, 2011
- Journal of Hepatology
Novel insights in the interplay between inflammation and metabolic diseases: A role for the pathogen sensing kinase PKR
- Research Article
- 10.1152/physiol.2024.39.s1.419
- May 1, 2024
- Physiology
INTRODUCTION: One-third of cardiomyocyte are lost just before birth in the normally developing heart. The underlying reasons for this cell loss are unknown. We studied the role of the endoplasmic reticulum (ER) stress response in regulation of cardiomyocyte apoptosis in perinatal sheep hearts. We hypothesized that the signaling balance from survival to apoptosis changes just before the cardiomyocyte numbers decline, and that the ER stress response contributes. METHODS: Snap-frozen left ventricular (LV) samples and cultured cardiomyocytes from normally-growing lambs at 135 d of gestational age (dGA; term=147 dGA), 143 dGA and 1 d postnatal age (dPN) were used for this study (n=6 each age).Gene and protein regulation was studied by RT-PCR and western blot analysis. Parameters were compared by age by 1-way ANOVA followed, if justified, by Šídák's multiple comparisons test. RESULTS: In the LV, the ER stress master regulatory protein GRP78 was similar within fetal ages, but declined 32% between 143 dGA and 1 dPN (P= 0.0005), indicating less capacity for responding to misfolded proteins. eIF2α, downstream of GRP78, is critical for deciding the survival/apoptosis outcome following ER stress. Phosphorylation of eIF2α doubled between 135 dGA and 143 dGA (P=0.0015), implying increased ER stress in this period, and declined again at 1 dPN (p<0.0001 vs. 143 dGA). Cleaved apoptosis effector caspase 3 protein peaked after birth; levels at 1 dPN were 1- to 2-fold higher than at other ages (p<0.0001 vs. 135 dGA, P=0.002 vs. 143 dGA). Together, these data suggest that survival signaling in the ER stress pathway may be blunted between 135 and 143 dGA, as evidenced by diminished GRP78 expression and elevated eIF2α phosphorylation, resulting in activation of the apoptosis pathway. To better understand the mechanisms regulating dynamic perinatal changes in the ER stress response pathway, we studied sensitivity to ER stress (thapsigargin: 5 μM, 12 h) in cultured LV cardiomyocytes. In response to thapsigargin, GRP78 protein levels rose ~3-fold higher in cells from 135 dGA compared to 143 dGA or 1 dPN hearts (p<0.0001), supporting diminishing survival signaling closer to the time of birth. Phosphorylation of eIF2α followed a similar pattern and was highest in 135 dGA cells (p<0.0001 vs. 143 dGA and 1 dPN). This contrasts to the greater levels of phospho-eIF2α at 143 dGA in the tissue analysis. Thapsigargin stimulated 2-fold more cleavage of caspase 3 at 1 dPN than 135 dGA (P=0.0243), a similar timing as found in LV tissue. CONCLUSION: Findings suggest that at two weeks before birth, heart and cardiomyocytes are resilient to ER stress and stimulation of apoptosis, whereas nearer the time of birth there is a blunted ER stress response and increased activation of apoptotic pathways. R01HL142483 (Jonker), Collins Foundation (Bose). This is the full abstract presented at the American Physiology Summit 2024 meeting and is only available in HTML format. There are no additional versions or additional content available for this abstract. Physiology was not involved in the peer review process.
- Research Article
4
- 10.3390/jcm11133662
- Jun 24, 2022
- Journal of Clinical Medicine
Glioblastoma multiforme (GBM) is an aggressive brain tumor with high risks of recurrence and mortality. Chemoradiotherapy resistance has been considered a major factor contributing to the extremely poor prognosis of GBM patients. Therefore, there is an urgent need to develop highly effective therapeutic agents. Here, we demonstrate the anti-tumor effect of morusin, a typical prenylated flavonoid, in GBM through in vivo and in vitro models. Morusin showed selective cytotoxicity toward GBM cell lines without harming normal human astrocytes when the concentration was less than 20 µM. Morusin treatment significantly induced apoptosis of GBM cells, accompanied by the activation of endoplasmic reticulum (ER) stress, and the appearance of cytoplasmic vacuolation and autophagosomes in cells. Then, we found the ER stress activation and cytotoxicity of morusin were rescued by ER stress inhibitor 4-PBA. Furthermore, morusin arrested cell cycle at the G1 phase and inhibited cell proliferation of GBM cells through the Akt–mTOR–p70S6K pathway. Dysregulation of ERs and cell cycle in morusin exposed GBM cells were confirmed by RNA-seq analysis. Finally, we demonstrated the combination of morusin and TMZ remarkably enhanced ER stress and displayed a synergistic effect in GBM cells, and suppressed tumor progression in an orthotopic xenograft model. In conclusion, these findings reveal the toxicity of morusin to GBM cells and its ability to enhance drug sensitivity to TMZ, suggesting the potential application value of morusin in the development of therapeutic strategies for human GBM.
- Research Article
- 10.13028/m2v30x
- Nov 30, 2016
Glioblastoma multiforme (GBM) is a deadly grade IV brain tumor characterized by a heterogeneous population of cells that are drug resistant, aggressive, and infiltrative. The current standard of care, which has not changed in over a decade, only provides GBM patients with 12-14 months survival post diagnosis. We asked if the addition of a novel endoplasmic reticulum (ER) stress inducing agent, JLK1486, to the standard chemotherapy, temozolomide (TMZ), which induces DNA double strand breaks (DSBs), would enhance TMZ’s efficacy. Because GBMs rely on the ER to mitigate their hypoxic environment and DNA repair to fix TMZ induced DSBs, we reasoned that DSBs occurring during heightened ER stress would be deleterious. Treatment of GBM cells with TMZ+JLK1486 decreased cell viability and increased cell death due to apoptosis. We found that TMZ+JLK1486 prolonged ER stress induction, as indicated by elevated ER stress marker BiP, ATF4, and CHOP, while sustaining activation of the DNA damage response pathway. This combination produced unresolved DNA DSBs due to RAD51 reduction, a key DNA repair factor. The combination of TMZ+JLK1486 is a potential novel therapeutic combination and suggests an inverse relationship between ER stress and DNA repair pathways.
- Research Article
96
- 10.1002/aur.1966
- May 15, 2018
- Autism Research
Autism results in significant morbidity and mortality in children. The functional and molecular changes in the autistic brains are unclear. The present study utilized autistic brain tissues from the National Institute of Child Health and Human Development's Brain Tissue Bank for the analysis of cellular and molecular changes in autistic brains. Three key brain regions, the hippocampus, the cerebellum, and the frontal cortex, in six cases of autistic brains and six cases of non-autistic brains from 6 to 16 years old deceased children, were analyzed. The current study investigated the possible roles of endoplasmic reticulum (ER) stress, oxidative stress, and apoptosis as molecular mechanisms underlying autism. The activation of three signals of ER stress (protein kinase R-like endoplasmic reticulum kinase, activating transcription factor 6, inositol-requiring enzyme 1 alpha) varies in different regions. The occurrence of ER stress leads to apoptosis in autistic brains. ER stress may result from oxidative stress because of elevated levels of the oxidative stress markers: 4-Hydroxynonenal and nitrotyrosine-modified proteins in autistic brains. These findings suggest that cellular stress and apoptosis may contribute to the autistic phenotype. Pharmaceuticals and/or dietary supplements, which can alleviate ER stress, oxidative stress and apoptosis, may be effective in ameliorating adverse phenotypes associated with autism.
- Research Article
1
- 10.1016/j.bbalip.2020.158713
- Apr 21, 2020
- BBA - Molecular and Cell Biology of Lipids
VLDL and HDL attenuate endoplasmic reticulum and metabolic stress in HL-1 cardiomyocytes
- Front Matter
1
- 10.1053/j.gastro.2011.08.024
- Aug 24, 2011
- Gastroenterology
Pancreatic Stress and Regeneration
- Ask R Discovery
- Chat PDF
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