Abstract
Synchrotron resonance-enhanced infrared atomic force microscopy (RE-AFM-IR) is a near-field photothermal vibrational nanoprobe developed at Diamond Light Source (DLS), capable of measuring mid-infrared absorption spectra with spatial resolution around 100 nm. The present study reports a first application of synchrotron RE-AFM-IR to interrogate biological soft matter at the subcellular level, in this case, on a cellular model of drug-induced phospholipidosis (DIPL). J774A-1 macrophages were exposed to amiodarone (10 μM) or medium for 24 h and chemically fixed. AFM topography maps revealed amiodarone-treated cells with enlarged cytoplasm and very thin regions corresponding to collapsed vesicles. IR maps of the whole cell were analyzed by exploiting the RE-AFM-IR overall signal, i.e., the integrated RE-AFM-IR signal amplitude versus AFM-derived cell thickness, also on lateral resolution around 100 nm. Results show that vibrational band assignment was possible, and all characteristic peaks for lipids, proteins, and DNA/RNA were identified. Both peak ratio and unsupervised chemometric analysis of RE-AFM-IR nanospectra generated from the nuclear and perinuclear regions of untreated and amiodarone-treated cells showed that the perinuclear region (i.e., cytoplasm) of amiodarone-treated cells had significantly elevated band intensities in the regions corresponding to phosphate and carbonyl groups, indicating detection of phospholipid-rich inclusion bodies typical for cells with DIPL. The results of this study are of importance to demonstrate not only the applicability of Synchrotron RE-AFM-IR to soft biological matters with subcellular spatial resolution but also that the spectral information gathered from an individual submicron sample volume enables chemometric identification of treatment and biochemical differences between mammalian cells.
Highlights
Synchrotron resonance-enhanced infrared atomic force microscopy (RE-AFM-IR) is a near-field photothermal vibrational nanoprobe developed at Diamond Light Source (DLS), capable of measuring mid-infrared absorption spectra with spatial resolution around 100 nm
Averaged synchrotron radiation (SR) RE-AFM-IR spectra from 15 to 20 scan points across three cells from each group (UT vs AM) were compared to a transmission SR-FTIR spectrum generated from single cells on the same sample slides (Figure 3)
The signal-tonoise ratio (SNR) of the RE-AFM-IR spectra was lower than that of the transmission FTIR spectrum as the RE-AFM-IR instrument obtains its signal from a sample volume that is several orders of magnitude smaller than the SR-FTIR measurement
Summary
Synchrotron resonance-enhanced infrared atomic force microscopy (RE-AFM-IR) is a near-field photothermal vibrational nanoprobe developed at Diamond Light Source (DLS), capable of measuring mid-infrared absorption spectra with spatial resolution around 100 nm. The integrated RE-AFM-IR signal amplitude (due to all IR wavelengths absorption with no spectral discrimination) was used as it can be rapidly acquired during topography maps and is directly related to morphological features of the cell, providing insight into the minimum sample thickness required to generate RE-AFM-IR spectra of sufficiently high signal-tonoise ratio (SNR) for analysis. From these spectra, bands characteristic for cellular components, such as lipids, proteins, and nucleic acids, were evaluated across the cells to distinguish areas of characteristic chemical composition at a high spatial resolution. Band ratio analysis and principle component analysis of the collected spectra from the nuclear and perinuclear regions of the cells were performed to interrogate differences between untreated and amiodaronetreated groups
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