Abstract

The structural characterization of peripheral membrane proteins represents a tremendous challenge in structural biology due to their transient interaction with the membrane and the potential multitude of protein conformations during this interaction. Neutron reflectometry is uniquely suited to address this problem because of its ability to structurally characterize biological model systems nondestructively and under biomimetic conditions that retain full protein functionality. Being sensitive to only the membrane-bound fraction of a water-soluble peripheral protein, neutron reflectometry obtains a low-resolution average structure of the protein-membrane complex that is further refined using integrative modeling strategies. Here, the authors review the current technological state of biological neutron reflectometry exemplified by a detailed report on the structure determination of the myristoylated human immunodeficiency virus-1 (HIV-1) Gag matrix associated with phosphoserine-containing model membranes. The authors found that the HIV-1 Gag matrix is able to adopt different configurations at the membrane in a pH-dependent manner and that the myristate group orients the protein in a way that is conducive to PIP2-binding.

Highlights

  • The authors review the current technological state of biological neutron reflectometry exemplified by a detailed report on the structure determination of the myristoylated human immunodeficiency virus-1 (HIV-1) Gag matrix associated with phosphoserine-containing model membranes

  • Structural characterization of peripheral membrane proteins poses unique challenges due to their interaction with the membrane, which is often transient, and the variety of protein conformations that can occur during this interaction

  • Detailed knowledge of membrane binding characteristics and aggregation behavior of a protein is required before a structural characterization can be pursued

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Summary

Structural biology of peripheral membrane proteins

02D408-2 interpretation can be achieved using integrated modeling strategies involving complementary experimental data and molecular dynamics (MD) simulations.

HIV-1 Gag MA
BIOLOGICAL NEUTRON REFLECTOMETRY
Biomimetic model membrane systems
Composition-space modeling of neutron reflectometry
Integrative modeling of interfacial structures
Protein expression and purification
Mass spectrometry
HDX-MS and HDX data processing
Lipid and liposome preparation
Neutron reflectometry
Surface plasmon resonance
MA membrane binding depends on pH
Findings
CONCLUSION
Full Text
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