Stemonosudis fumea, a new barracudina (Aulopiformes: Paralepididae) from Japan, with taxonomic comments on the Stemonosudis rothschildi species complex

BackgroundThe availability of mitochondrial genomes has allowed for the resolution of numerous questions regarding the evolutionary history of fungi and other eukaryotes. In the Gibberella fujikuroi species complex, the exact relationships among the so-called “African”, “Asian” and “American” Clades remain largely unresolved, irrespective of the markers employed. In this study, we considered the feasibility of using mitochondrial genes to infer the phylogenetic relationships among Fusarium species in this complex. The mitochondrial genomes of representatives of the three Clades (Fusarium circinatum, F. verticillioides and F. fujikuroi) were characterized and we determined whether or not the mitochondrial genomes of these fungi have value in resolving the higher level evolutionary relationships in the complex.ResultsOverall, the mitochondrial genomes of the three species displayed a high degree of synteny, with all the genes (protein coding genes, unique ORFs, ribosomal RNA and tRNA genes) in identical order and orientation, as well as introns that share similar positions within genes. The intergenic regions and introns generally contributed significantly to the size differences and diversity observed among these genomes. Phylogenetic analysis of the concatenated protein-coding dataset separated members of the Gibberella fujikuroi complex from other Fusarium species and suggested that F. fujikuroi (“Asian” Clade) is basal in the complex. However, individual mitochondrial gene trees were largely incongruent with one another and with the concatenated gene tree, because six distinct phylogenetic trees were recovered from the various single gene datasets.ConclusionThe mitochondrial genomes of Fusarium species in the Gibberella fujikuroi complex are remarkably similar to those of the previously characterized Fusarium species and Sordariomycetes. Despite apparently representing a single replicative unit, all of the genes encoded on the mitochondrial genomes of these fungi do not share the same evolutionary history. This incongruence could be due to biased selection on some genes or recombination among mitochondrial genomes. The results thus suggest that the use of individual mitochondrial genes for phylogenetic inference could mask the true relationships between species in this complex.

Anopheles cruzii is a small sylvatic mosquito and primary human Plasmodium vector in Southern Brazil. The distribution of this bromeliad-breeding mosquito follows the Atlantic forest coastal distribution, where bromeliads are abundant. Morphological, genetic, and molecular polymorphisms among different populations have been reported and it has recently been suggested that An. cruzii is a complex of cryptic species. The aim of this work is to analyze the gene flow between different populations of An. cruzii collected in four localities within the geographic distribution range of the species, and to examine if An. cruzii is a complex of cryptic species. The genetic distances show that populations of the states of Santa Catarina, Sao Paulo, and Rio de Janeiro are genetically closer (0.032 to 0.083) than populations of Bahia (0.364 to 0.853) based on profiles from 10 distinct isoenzyme loci. The Fst was lower (0.077) when the Bahia population was excluded than when it was included (0.300) in the analyses. The inferred number of migrants per generation was 2.99 individuals among populations from the states of Santa Catarina, Sao Paulo, and Rio de Janeiro and 0.58 migrants per generation among all populations. Results suggest that An. cruzii is a complex of species and that the specimens of state of Bahia can be considered as belonging to a species that is distinct from other three closely-related populations studied.

Raymundo, Thayna da Silva, Martins, Jéssica Letícia Abreu, Ferreira, Douglas da Silva, Gonçalves, Maísa de Carvalho, Serrão, José Eduardo, Salles, Frederico Falcão (2021): The morphology of the eggs in the Hermanella complex (Ephemeroptera: Leptophlebiidae). Revista Brasileira de Entomologia (e20200121) 65 (1): 1-5, DOI: 10.1590/1806-9665-RBENT-2020-0121, URL: http://dx.doi.org/10.1590/1806-9665-rbent-2020-0121

The oligochaete worm, Cognettia sphagnetorum (Vejdovský, 1878), is widely used as a model organism in soil biology, and therefore it is important that its taxonomy is firmly established. A previous study based on both mitochondrial and nuclear genetic markers showed that this taxon is an assemblage of at least four species that do not form a monophyletic group. Also the validity of the genus Cognettia Nielsen and Christensen, 1959 is subject to debate, since the existence of two putative senior synonyms, Euenchytraeus Bretscher, 1906 and Chamaedrilus Friend, 1913 has been pointed out. Herein we revise the generic assignment of the species currently placed in Cognettia: two species, C. clarae Bauer, 1993 and C. piperi Christensen and Dózsa-Farkas, 1999, are transferred to Euenchytraeus, together with its type Eu. bisetosus Bretscher, 1906, whereas the remaining species, including Cognettia sphagnetorum, are being transferred to Chamaedrilus. Five species within the Chamaedrilus sphagnetorum complex are revised: the type species of Chamaedrilus, Ch. chlorophilus Friend, 1913, as well as the type species of Cognettia, Ch. sphagnetorum s. str. are redescribed, and a neotype is designated for the latter; and the cryptic species Ch. pseudosphagnetorum sp. nov. and Ch. chalupskyi sp. nov. are described as new to science and discussed against a paratype of Ch. valeriae (Dumnicka, 2010) comb. nov. DNA-barcodes are provided for all the named species in the complex except Ch. valeriae. A key to the species in the complex is given and the value of different somatic characters for separating and identifying species of Chamaedrilus is discussed. No morphological feature seems to distinguish Ch. sphagnetorum from Ch. pseudosphagnetorum. Thus, for a reliable identification of these species, molecular methods, e.g. DNA barcoding, are recommended.http://zoobank.org/urn:lsid:zoobank.org:pub:F840CD92-F784-429E-B4BF-3E61F6632A8D

Type material is used to illustrate and redescribe the following species in the paramunnid Austrosignum-Munnogonium complex (classification sensu Just and Wilson 2007): Cryosignum incisum (Richardson, 1908), Cryosignum latifrons (Menzies, 1962) comb. nov., Meridiosignum kerguelensis (Vanhöffen, 1914), Munnogonium falklandicum (Nordenstam, 1933), Munnogonium globifrons (Menzies, 1962), and Munnogonium tillerae (Menzies Barnard, 1959,-topotypes). In addition, seven new species in the complex are described, Austrosignum pilosum, Austrosignum latum, Cryosignum nordenstami, Meridiosignum convexum, Meridiosignum macquariensis, Munnogonium longicaudatum, and Tethygonium monocuspis. Boreosignum Just and Wilson, 2007 is reported from Australia for the first time as Boreosignum specimens. Keys to species in Austrosignum, Cryosignum, Meridiosignum, Munnogonium and Tethygonium are given. A summary of distribution with a list of all species in the complex including occurrence is presented.

We studied collections from four species of the Dryopteris patula complex (D. cinnamomea, D. patula, D. rosea, and D. rossii) to identify the morphological characters that distinguish them from one another. D. maxonii and D. wallichiana were included as comparative species to evaluate characters that distinguish species within the complex. Quantitative characters were examined through principal component and canonical discriminant analyses, and both qualitative and quantitative characters were used to obtain phenograms. Multivariate analyses determined that basal pinna length, stipe scale length, number of pinna pairs, and frond length are the variables that discriminate among D. rossii and the other species of the complex. The phenogram showed two groups. One included D. maxonii and D. wallichiana , while the second grouped the four species of the complex. These species were distinguished by the shape and margin of their rhizome scales, color of stipe, and shape of the blade. A combination of morphological characters supports the recognition of the four species as valid. An identification key is given and a taxonomic treatment is presented for each of the taxa.

We describe a new frog species of the Spinomantis bertini species complex based on congruent genetic evidence from mitochondrial and nuclear DNA sequences as well as minor morphological differences. A molecular phylogeny derived from the mitochondrial 16S rRNA gene revealed that Spinomantis mirus sp. nov. is sister to a clade containing the other two described species of the species complex, S. bertini and S. beckei, but strongly differentiated from these two species by 8.1-9.8% pairwise distances in this gene. DNA sequences from two nuclear genes revealed that S. mirus sp. nov. shares no alleles with these two species. Phenotypically, S. mirus sp. nov. differs from the other species of the complex by its larger size and some aspects of its coloration, including clear mottling on the flanks, tri-color banding on the legs, and distinct brown dots on the dorsum. The new species is so far only known from Pic d'Ivohibe Special Reserve. Its distribution thus appears to not overlap with those of the other two species, which as far as known are restricted to the Andohahela Massif in the extreme South-East of Madagascar, at a distance of about 250 km from Ivohibe.

Recent molecular studies indicate that the Pyropialanceolata species complex on the west coast of North America is more speciose than previously thought. Based on extensive rbcL gene sequencing of representative specimens we recognize seven species in the complex, three of which are newly described: Pyropiamontereyensissp. nov., Pyropiacolumbiensissp. nov., and Pyropiaprotolanceolatasp. nov. The new species are all lanceolate, at least when young, and occur in the upper mid to high intertidal zone primarily in winter and early spring. Pyropiamontereyensis and Pyropiacolumbiensis are sister taxa that are distributed south and north of Cape Mendocino, respectively, and both occur slightly lower on the shore than Pyropialanceolata or Pyropiapseudolanceolata. Pyropiaprotolanceolata is known thus far only from Morro Rock and the Monterey Peninsula, California; it occurs basally to the other species in the complex in the molecular phylogeny. A fourth newly described species, Pyropiabajacaliforniensissp. nov., is more closely related to Pyropianereocystis than to species in this complex proper. It is a thin species with undulate margins known only from Moss Landing, Monterey Bay, California, and northern Baja California; it also occurs in the high intertidal in spring. Porphyramumfordii, a high intertidal winter species that has frequently been confused with species in the Pyropialanceolata complex, has now been confirmed to occur from Calvert Island, British Columbia, to Pescadero State Park, California.

The following new species in the New World Natada complex are described: Natada minuscula, Natada cecilia, Natada lalogamezi, Natada kokii, Natada monteverdensis, Narosopsis iangauldi, and Euprosterna wemilleri. Natada minuscula is the smallest known species in the complex. Of the new species, only Natada kokii, Natada cecilia and Narosopsis iangauldi are known to occur outside of Costa Rica. Previously the New World Natada complex had 43 species in the neotropics. It is anticipated that the proportion of new species in the complex will exceed other major lineages of Limacodidae found in Costa Rica.

Astyanax has been the subject of extensive cytogenetic studies due to its wide karyotypic diversity. This genus comprises species complexes, namely groups of fish of difficult morphological differentiation, such as the bimaculatus complex, which includes the characids with a rounded humeral spot. Thence, the present study proposed to accomplish a cytogenetic characterization of two species of this complex: A. asuncionensis and A. altiparanae, aiming to find chromosomal markers that differentiate these species, as well as achieve a better understanding of the karyotype evolution in the genus. For this we used different techniques of chromosome banding as C-banding, impregnation by silver nitrate, fluorochrome staining and FISH with 18S rDNA probe. This is the first cytogenetic study in A. asuncionensis, from Miranda river, which presented 2n=50 and 18m+22sm+6st+4a (FN=96) and single NORs. The populations of A. altiparanae also presented 2n=50, but with different karyotypic formulae: the population of the Quexada river presented 16m+24sm+4st+6a (FN=94) and the Esperança stream and Jacutinga river showed 16m+20sm+4st+10a (FN=90). All analyzed populations showed an interindividual variation in the number and location of the nucleolar organizer regions (NORs). Single and multiple NORs were detected either by impregnation with silver nitrate or by FISH with 18S rDNA probe. After C-banding, the two species differed in relation to the composition and heterochromatin distribution. The meiotic cells of A. altiparanae male individuals were also analyzed, showing that, despite the high karyotype variability, chromosome pairing occurs normally. The data show that A. altiparanae and A. asuncionensis share some characteristics with other species of the bimaculatus complex, suggesting a close phylogenetic relationship among those species. However, some features can be used as differentiation chromosomal markers in altiparanae/asuncionensis morphotypes, which could result from a natural speciation process.

Calonectria leaf blight caused by Calonectria species is one of the most important diseases associated with Eucalyptus plantations in Asia and South America. This study aimed to clarify the distribution patterns of Calonectria species residing in different species complexes associated with diseased trees and soils during leaf blight outbreak season in Eucalyptus plantations in southern China. In this study, 482 Calonectria isolates obtained from diseased Eucalyptus trees and soils under these trees in eight sampling sites in three provinces were identified by DNA sequence analyses of tef1, tub2, cmdA, and his3 gene regions. Six species residing in three species complexes were identified: Calonectriapseudoreteaudii and C.acaciicola in the Calonectriareteaudii species complex; C.hongkongensis, C.aconidialis, and C.chinensis in C.kyotensis species complex; and C.auriculiformis in C.cylindrospora species complex. The habitats of Calonectria in different species complexes differed, C.reteaudii species complex inhabits in both diseased trees and soils, C.kyotensis species complex only in soils. The Calonectria leaf blight in the sampled regions was caused by species in the C.reteaudii species complex but not by the species in the C.kyotensis species complex. These findings suggest that the species in the C.reteaudii species complex should receive more attention in disease management, as they are the primary cause of the disease in the sampled regions.

E1210 is a first-in-class broad-spectrum antifungal that suppresses hyphal growth by inhibiting fungal glycophosphatidylinositol (GPI) biosynthesis. In the present study, we extend these findings by examining the activity of E1210 and comparator antifungal agents against Aspergillus spp. by using the methods of the Clinical and Laboratory Standards Institute (CLSI) and the European Committee for Antimicrobial Susceptibility Testing (EUCAST) to test wild-type (WT) as well as amphotericin B (AMB)-resistant (-R) and azole-R strains (as determined by CLSI methods). Seventy-eight clinical isolates of Aspergillus were tested including 20 isolates of Aspergillus flavus species complex (SC), 22 of A. fumigatus SC, 13 of A. niger SC, and 23 of A. terreus SC. The collection included 15 AMB-R (MIC, ≥ 2 μg/ml) isolates of A. terreus SC and 10 itraconazole-R (MIC, ≥ 4 μg/ml) isolates of A. fumigatus SC (7 isolates), A. niger SC (2 isolates), and A. terreus SC (1 isolate). Comparator antifungal agents included anidulafungin, caspofungin, amphotericin B, itraconazole, posaconzole, and voriconazole. Both CLSI and EUCAST methods were highly concordant for E1210 and all comparators. The essential agreement (EA; ± 2 log(2) dilution steps) was 100% for all comparisons with the exception of posaconazole versus A. terreus SC (EA = 91.3%). The minimum effective concentration (MEC)/MIC(90) values (μg/ml) for E1210, anidulafungin, caspofungin, itraconazole, posaconazole, and voriconazole, respectively, were as follows for each species: for A. flavus SC, 0.03, ≤ 0.008, 0.12, 1, 1, and 1; for A. fumigatus SC, 0.06, 0.015, 0.12, >8, 1, and 4; for A. niger SC, 0.015, 0.03, 0.12, 4, 1, and 2; and for A. terreus SC, 0.06, 0.015, 0.12, 1, 0.5, and 1. E1210 was very active against AMB-R strains of A. terreus SC (MEC range, 0.015 to 0.06 μg/ml) and itraconazole-R strains of A. fumigatus SC (MEC range, 0.03 to 0.12 μg/ml), A. niger SC (MEC, 0.008 μg/ml), and A. terreus SC (MEC, 0.015 μg/ml). In conclusion, E1210 was a very potent and broad-spectrum antifungal agent regardless of in vitro method applied, with excellent activity against AMB-R and itraconazole-R strains of Aspergillus spp.

Lebanon is a small Mediterranean country with different pedoclimatic conditions that allow the growth of both temperate and tropical plants. Currently, few studies are available on the occurrence and diversity of Fusarium species on Lebanese crops. A wide population of Fusarium strains was isolated from different symptomatic plants in the last 10 years. In the present investigation, a set of 134 representative strains were molecularly identified by sequencing the translation elongation factor, used in Fusarium as a barcoding gene. Great variability was observed, since the strains were grouped into nine different Fusarium Species Complexes (SCs). Fusarium oxysporum SC and Fusarium solani SC were the most frequent (53% and 24%, respectively). Members of important mycotoxigenic SCs were also detected: F. fujikuroi SC (7%), F. sambucinum SC (5%), F. incarnatum-equiseti SC (3%), and F. tricinctum SC (4%). Two strains belonging to F. lateritium SC, a single strain belonging to F. burgessii SC, and a single strain belonging to F. redolens SC were also detected. This paper reports, for the first time, the occurrence of several Fusarium species on Lebanese host plants. The clear picture of the Fusarium species distribution provided in this study can pose a basis for both a better understanding of the potential phytopathological and toxicological risks and planning future Fusarium management strategies in Lebanon.

Forest inventories in Amazonia include around 5000 described tree species belonging to more than 800 genera. Numerous species-rich genera share genetic variation among species because of recent speciation and/or recurrent hybridisation, forming species complexes. Despite the key role that tree species complexes play in understanding Neotropical diversification, and their need to exploit a diversity of niches, little is known about the mechanisms that allow local coexistence of tree species complexes and their species in sympatry. In this study, we explored the fine-scale distribution of five tree species complexes and 22 species within these complexes. Combining forest inventories, botanical determination, and LiDAR-derived topographic data over 120ha of permanent plots in French Guiana, we used a Bayesian modelling framework to test the role of fine-scale topographic wetness and tree neighbourhood on the occurrence of species complexes and the relative distribution of species within complexes. Species complexes of Neotropical trees were widely spread across the topographic wetness gradient at the local scale. Species within complexes showed pervasive niche differentiation along with topographic wetness and competition gradients. Similar patterns of species-specific habitat preferences were observed within several species complexes: species more tolerant to competition for resources grow in drier and less fertile plateaus and slopes. If supported by partial reproductive isolation of species and adaptive introgression at the species complex level, our results suggest that both species-specific habitat specialisation within species complexes and the broad ecological distribution of species complexes might explain the success of these species complexes at the regional scale.

Species complexes within epiphytic diatoms and their relevance for the bioindication of trophic status