Stacked-overlapped graphdiyne nano-iontronics enabling enhanced monovalent/divalent cation selectivity for single-cell pH detection

<p indent="0mm">Graphdiyne (GDY) is a novel diacetylene carbon allotrope with a two-dimensional (2D) planar network structure consisting of sp² and sp carbon atoms. Since its successful fabrication on the surface of a copper foil during experimentation, GDY has been gaining increasing attention owing to its high π-conjunction, wide interplanar spacing, tunable electronic properties, interesting structure, and excellent physicochemical stability. To date, extensive research efforts have been channeled toward theoretical prediction and synthesis methods and the applications of GDY and its derivatives in the fields of batteries, catalysts, biosensing, and biomedicine. Specifically, the unique properties of GDY, including a large hydrophobic planar network, specific surface area, and binding energies, render it an excellent compound for other functional materials or molecules to achieve high catalytic performance in the fields of biosensing and bioelectric chemistry. However, despite the great advances in GDY, reviews on the achievements are limited. The current review summarizes the recent advances of GDY and its derivatives in the sensing of small biological signaling molecules, focusing on the strategies for tailoring the surface and interface of the materials. The review also explores the relationship between the physicochemical properties of the materials and their sensing performance. The main contents of this review are as follows: First, we explain the structure and optical and electrical properties of GDY materials and describe the theoretical and experimental investigations on the basic properties of GDY. Owing to the unique structures of GDY, including its three-dimensional network pores and high π-conjunction, GDY can be facilely combined with other functional materials to improve catalytic ability, which is beneficial for achieving high sensitivity for sensing small molecules. Next, we discuss the functionalization strategies of GDY. The presence of carbon–carbon triple bonds in GDY allows it to be doped with metallic and nonmetallic species, including nitrogen, boron, phosphorus, copper, and palladium. Heteroatom doping can efficiently tune the electronic structures of GDY, which can enhance the sensing performance of GDY and its derivatives toward small biological signaling molecules. Moreover, the applications of GDY and its derivatives in sensing small biological signaling molecules are discussed and analyzed. We focus on the sensing mechanism and performance enhancement of GDY and its derivatives toward glucose, dopamine, ascorbic acid, uric acid, hydrogen peroxide, and nitric oxide. Moreover, we raise the key issues that need to be addressed in the future. Great research progress has been made on the synthesis of GDY-based materials and their applications. However, GDY-based materials and their sensing applications are still not well understood. For instance, to date, only GDY has been successfully synthesized. Other structures of graphynes have only been predicted through theoretical studies. Establishing other structures of graphynes in a controllable and scalable manner is highly difficult, but such techniques can produce structures with rich active sites and enhanced catalytic ability. Moreover, heteroatom doping can modify the physicochemical, electrical, and structural properties of GDY-based materials. Nevertheless, precisely doping heteroatoms on the GDY surface in a controllable manner remains a great challenge. With the remarkable advances in the exploration of new and practical synthesis methods, the interfacial reaction processes and the effects of the structure-activity relationship on the sensing performance of GDY-based materials can be elucidated. This can help expand the knowledge of biochemical and bioelectric applications related to GDY and its derivatives.

Ribonuclease P (RNase P) is an essential enzyme whose action produces the mature 5' termini of all cellular and organellar transfer RNA molecules. In bacteria, the catalytic subunit of RNase P is an RNA molecule which by itself can bind substrate pre-tRNA, select and hydrolyze the correct phosphodiester bond, and release product tRNA. The simple requirements of the reaction-a monovalent cation such as K+ or NH4+ and the divalent cation Mg2+ (or Mn2+)-have prompted proposals that all aspects of phosphodiester bond hydrolysis might be accomplished by one or more divalent metal cations coordinated to the enzyme or substrate. To precisely localize the ligands of catalytically-involved Mg2+, we assayed cleavage by Escherichia coli RNase P RNA of pre-tRNA in which specific pro-Rp phosphate oxygens were replaced with sulfur. RNase P cleavage was targeted to that bond, at or nearest to the normal cleavage site, at which Mg2+ or Mn2+ could be coordinated. Single-turnover kinetics demonstrated that the apparent rate constant for the hydrolysis event was determined quantitatively by the affinity of the divalent cation (Mg2+ or Mn2+) for the atom (O or S) at the pro-Rp position of the scissile phosphodiester bond. We propose a model for pre-tRNA cleavage in which an essential Mg2+ ion is coordinated directly to the pro-Rp phosphate oxygen and indirectly to two other ligands near the scissile bond: the upstream ribose 2'-hydroxyl and the downstream purine N7. This catalytic Mg2+ ion most likely positions and deprotonates a water molecule for in-line nucleophilic attack on the scissile bond phosphorus.

Divalent metal ions enhance bone regeneration through modulation of nervous systems and metabolic pathways.

Graphdiyne (GD) is a new kind of carbon nanomaterial which has carbon-carbon triple bonds to form a layered structure. Here, we report the application of GD as the matrix for small molecule analysis in laser desorption ionization mass spectrometry (LDI MS). The GD matrix displayed two advantages: little background in the low mass range and good molecular ion signal in negative ion mode for many small molecules, e.g., fatty acids, amino acids, peptides, and drugs can be obtained in negative ion mode. By comparing the signal intensity of tetraphenylborate and juglone with and without GD existing, it was found that GD can enhance both of the desorption efficiency and ionization efficiency in LDI. Through analysis of the serum samples from liver cancer patients and healthy people, the GD-assisted LDI MS results showed that fatty acids could be used as potential biomarkers for the early diagnosis of liver cancer.

Graphdiyne (GDY) is a two-dimensional (2D) carbon allotrope consisting of sp2- and sp-hybridized carbon atoms. It and GDY-based materials have tremendous application potentials in the fields of catalysis, energy, sensor, electronics and optoelectronics because of their excellent chemical and physical properties. Thus, the explorations to synthesize high-quality GDY and GDY-based materials and to reveal the relationship between their structures and properties are of significance, in which their structural characterization and identification are a crucial step. In this review, we focus on advanced structural characterization techniques and results on GDY, GDY derivatives, GDY composites and doped GDY, including scanning electron microscope (SEM), transmission electron microscope (TEM), atomic force microscope (AFM), Raman spectroscopy, X-ray photoelectron spectroscopy (XPS), X-ray diffraction (XRD), Fourier transform infrared (FT-IR) spectroscopy, ultraviolet-visible (UV-vis) spectroscopy, nuclear magnetic resonance (NMR) spectroscopy, X-ray absorption spectroscopy (XAS), electron energy loss spectroscopy (EELS), and energy-dispersive X-ray spectroscopy (EDS). This review can provide a systemic understanding of the structural characterization and identification of GDY and GDY-based materials and help their development for high-performance applications.

Graphdiyne (GDY), an emerging two-dimensional carbon allotrope, has recently been recognized not only as a conductive frame but also as an active regulator of mass transport and interfacial chemistry in rechargeable batteries. Its sp- and sp2-hybridized framework, enriched with alkyne bonds and extended π-conjugation, endows GDY with unique adaptability in both structural evolution and electronic modulation. These intrinsic features have stimulated a series of new concepts. Collectively, these concepts highlight GDY's dual role in facilitating mass transport and stabilizing interfaces. This feature summarizes recent advances in GDY-mediated transport and interfacial regulation, highlighting design principles, mechanistic understanding, and the correlation between structure and electrochemical performance. The review further emphasizes the significance of GDY as a versatile carbon platform, which is crucial for achieving high-rate capability, high energy density, and interfacial stability. It offers guidance for the rational design of next-generation rechargeable batteries.

We have studied the molecular determinants of ion permeation through the TRPV4 channel (VRL-2, TRP12, VR-OAC, and OTRPC4). TRPV4 is characterized by both inward and outward rectification, voltage-dependent block by Ruthenium Red, a moderate selectivity for divalent versus monovalent cations, and an Eisenman IV permeability sequence. We identify two aspartate residues, Asp(672) and Asp(682), as important determinants of the Ca(2+) sensitivity of the TRPV4 pore. Neutralization of either aspartate to alanine caused a moderate reduction of the relative permeability for divalent cations and of the degree of outward rectification. Neutralizing both aspartates simultaneously caused a much stronger reduction of Ca(2+) permeability and channel rectification and additionally altered the permeability order for monovalent cations toward Eisenman sequence II or I. Moreover, neutralizing Asp(682) but not Asp(672) strongly reduces the affinity of the channel for Ruthenium Red. Mutations to Met(680), which is located at the center of a putative selectivity filter, strongly reduced whole cell current amplitude and impaired Ca(2+) permeation. In contrast, neutralizing the only positively charged residue in the putative pore region, Lys(675), had no obvious effects on the properties of the TRPV4 channel pore. Our findings delineate the pore region of TRPV4 and give a first insight into the possible architecture of its permeation pathway.

1. Single canine cardiac Purkinje cells were internally perfused and voltage clamped with a large-bore perfusion pipette for measurement of sodium ionic current (INa) in the absence and presence of extracellular group IIA divalent cations (Mg2+, Ba2+ and Ca2+), transition divalent cations (CO2+, Mn2+ and Ni2+), group IIB divalent cations (Cd2+ and Zn2+), and the trivalent cation La3+. 2. Open channel block of cardiac INa by external Ca2+, assessed from instantaneous INa-voltage (I-V) relationships, has been well described by a two-barrier, one-well model with a dissociation constant at 0 mV, KB(0), of 37 mM and an electrical distance, z' = delta, of 0.34. At the most negative test potentials there was less block of INa than predicted by the model, but correction of INa for the contribution of Na+ channel gating current (Ig) to the peak current improved the fit by the model. 3. The divalent cations Ba2+, Mg2+, CO2+ and Mn2+ produced voltage-dependent, open channel block of INa, which by the two-barrier, one-well model predicted a similar z' about one-third into the membrane field. The relative efficacy for voltage-dependent block was CO2+ > Mn2+ > Ca2+ > Mg2+ > Ba2+ with respective KB(0)s of 11, 13, 37, 43 and 61 mM. 4. Cd2+, Zn2+ and La3+ produced block of INa at low concentrations that was nearly voltage independent with z' < or = 0.13. Fits of single-site binding curves to peak INa in response to step depolarizations at positive test potentials gave the following apparent KD values: Zn2+ 0.14 mM, Cd2+ 0.27 mM and La3+ 0.50 mM. 5. In the presence of Cd2+, INa tail current relaxations were much faster than could be accounted for by Cd2+ binding to and/or screening of extracellular surface charges. Fits of the data to a model that assumed voltage-dependent open channel block during the tail current relaxations estimated the KB(0) for Cd2+ to be 0.80 mM. 6. Both z' and KB(0) for Ni2+ from fits of the two-barrier, one-well model to instantaneous I-V relationships varied as a function of [Ni2+], consistent with the hypothesis that Ni2+ blocked with similar affinity at a voltage-dependent and a voltage-independent site. At [Ni2+] > or = 5 mM, KB(0) was 7.6 mM and z' was 0.21.(ABSTRACT TRUNCATED AT 400 WORDS)

Effects of metal cations on coupled birnessite structural transformation and natural organic matter adsorption and oxidation

The diffusion of cations in organic solvent solutions is important for the performance of metal-ion batteries. In this article, pulsed field gradient nuclear magnetic resonance experiments and fully atomistic molecular dynamic simulations were employed to study the temperature-dependent diffusive behavior of various liquid electrolytes representing 1M propylene carbonate solutions of metal salts with bis(trifluoromethylsulfonyl)imide (TFSI-) or hexafluorophosphate (PF6-) anions commonly used in lithium-ion batteries and beyond. The experimental studies revealed the temperature dependence of the diffusion coefficients for the propylene carbonate (PC) solvent and for the anions following an Arrhenius type of behavior. It was observed that the PC molecules are the faster species. For the monovalent cations (Li+, Na+, K+), the PC solvent diffusion was enhanced as the cation size increased, while for the divalent cations (Mg2+, Ca2+, Sr2+, Ba2+), the opposite trend was observed, i.e., the diffusion coefficients decreased as the cation size increased. The anion diffusion in LiTFSI and NaTFSI solutions was found to be similar, while in electrolytes with divalent cations, a decrease in anion diffusion with increasing cation size was observed. It was shown that non-polarizable charge-scaled force fields could correspond perfectly to the experimental values of the anion and PC solvent diffusion coefficients in salt solutions of both monovalent (Li+, Na+, K+) and divalent (Mg2+, Ca2+, Sr2+, Ba2+) cations at a range of operational temperatures. Finally, after calculating the radial distribution functions between cations, anions, and solvent molecules, the increase in the PC diffusion coefficient established with the increase in cation size for monovalent cations was clearly explained by the large hydration shell of small Li+ cations, due to their strong interaction with the PC solvent. In solutions with larger monovalent cations, such as Na+, and with a smaller solvation shell of PC, the PC diffusion is faster due to more liberated solvent molecules. In the salt solutions with divalent cations, both the anion and the PC diffusion coefficients decreased as the cation size increased due to an enhanced cation-anion coordination, which was accompanied by an increase in the amount of PC in the cation solvation shell due to the presence of anions.

Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd

Calcium cobalt hexacyanoferrate (CaCoHCF) was synthesized and tested as a cathode material for rechargeable batteries, using divalent cations (Mg2+, Ca2+, Ba2+). CaCoHCF demonstrated reversible specific capacity and coulombic efficiency (in parentheses) of 45.49 mAh/g (99.18%) for Mg2+, 55.04 mAh/g (99.2%) for Ca2+, and 44.09 mAh/g (99.42%) for Ba2+, at a current density of 25 mA/g. Of the three ions, Ca2+ resulted in the highest absolute specific capacity as well as high specific capacity utilization. The cathodes were also subjected to rate capability measurements using current densities of 50 mA/g (30 cycles) and 0.1 A/g (100 cycles). Upon addition of 2 mL water to the non-aqueous electrolyte, the fraction of theoretical specific capacity increased to 0.55 for Mg2+, 94.8% for Ca2+, and 95.53% forBa2+. This increase has been interpreted as the ability of the cathode material to intercalate and de-intercalate more ions due to the electrostatic shielding provided by water molecules between the host lattice and the guest cations. An empirical relationship between the cation size and specific capacity utilization is presented.Calcium cobalt hexacyanoferrate (CaCoHCF) was synthesized and tested as a cathode material for rechargeable batteries, using divalent cations (Mg2+, Ca2+, Ba2+). CaCoHCF demonstrated reversible specific capacity and coulombic efficiency (in parentheses) of 45.49 mAh/g (99.18%) for Mg2+, 55.04 mAh/g (99.2%) for Ca2+, and 44.09 mAh/g (99.42%) for Ba2+, at a current density of 25 mA/g. Of the three ions, Ca2+ resulted in highest absolute specific capacity as well as high specific capacity utilization. The cathodes were also subjected to rate capability measurements using current densities of 50 mA/g (30 cycles) and 0.1 A/g (100 cycles). Upon addition of 2 mL water to the non-aqueous electrolyte, the fraction of theoretical specific capacity increased to 0.55 for Mg2+, 94.8% for Ca2+, and 95.53% forBa2+. This increase has been interpreted as the ability of the cathode material to intercalate and de-intercalate more ions due to the electrostatic shielding provided by water molecules between the host lattice and the guest cations. An empirical relationship between the cation size and specific capacity utilization is presented.

The potential of divalent cation Mg2+ in formation water (FW) for low-salinity (LS) EOR effect was previously investigated [Al-Saedi et al. in Oil recovery analyses and formation water investigations for high salinity-low salinity water flooding in sandstone reservoirs. SPE, 190845, 2018 1], where the increase in divalent cations in FW lowered the effect of LS water. In this study, we studied the importance of the same divalent cation (Mg2+ only) in the injected water. Berea sandstone cores were successfully flooded with FW and LS water at 130 °C. While injecting both brines, samples of the effluent were analyzed for pH. Oil recovery experiments with a double Mg2+ concentration showed a lower LS water effect, meaning that the cores became more water-wet; however, the LS water effect was much greater when the amount of Mg2+ in the HS water was decreased by half.

Magnesium (Mg2+) increases binding of follicle-stimulating hormone (FSH) to membrane-bound receptors and increases adenylyl cyclase activity. We examined the effects of divalent and monovalent cations on FSH binding to receptors in granulosa cells from immature porcine follicles. Divalent and monovalent cations increased binding of [125I]iodo-porcine FSH (125I-pFSH). The divalent cations Mg2+, calcium (Ca2+) and manganese, (Mn2+) increased specific binding a maximum of 4- to 5-fold at added concentrations of 10 mM. Mg2+ caused a half-maximal enhancement of binding at 0.6 mM, whereas Ca2+ and Mn2+ had half-maximal effects at 0.7 mM and 0.8 mM, respectively. The monovalent cation potassium (K+) increased binding a maximum of 1.5-fold at an added concentration of 50 mM, whereas the monovalent cation (Na+) did not increase binding at any concentration tested. The difference between K+ and Na+ suggested that either enhancement of binding was not a simple ionic effect or Na+ has a negative effect that suppresses its positive effect. Ethylenediamine tetraacetic acid, a chelator of Mg2+, prevented binding of 125I-pFSH only in the presence of Mg2+, whereas pregnant mare's serum gonadotropin, a competitor with FSH for the receptor, prevented binding in both the absence and the presence of Mg2+. Guanyl-5-ylimidodiphosphate (Gpp[NH]p) inhibited binding of 125I-pFSH in the absence or presence of Mg2+, but only at Gpp(NH)p concentrations greater than 1 mM. We used Mg2+ to determine if divalent cations enhanced FSH binding by increasing receptor affinity or by increasing the apparent number of binding sites.(ABSTRACT TRUNCATED AT 250 WORDS)

Three distinct enzymes hydrolyzing either ApppA or AppppA, or both, were separated and purified from yellow lupin seed extracts. Two of the enzymes were purified to homogeneity. These enzymes differ greatly in their catalytic and physical properties. One hydrolase, with a native molecular weight of 41,000, exhibits broad pH (from 5-8) optimum for activity, requires Mg2+ for activity, is inhibited by zinc ions (I0.5 = 25 microM) and hydrolyses ApppA (V = 1), ApppC (V = 0.38), ApppG (V = 0.2), and ribose(5')pppA (V = 0.2). The enzyme exhibits much lower activity with AppppA (V = 0.1), and ApppppA, AppppppA, ppppA, and ATP are hydrolyzed 25- to 100-fold slower then ApppA. ADP was always one of the products of the reactions catalyzed by the enzyme. AppA, NAD, NADP, FAD, cAMP, and p-nitrophenyl-thymidine 5'-phosphate were not hydrolyzed by the enzyme. The enzyme is diadenosine 5',5"'-P1, P3-triphosphatase. The second hydrolase, composed of one polypeptide chain of a molecular weight 18,000-18,500, exhibits optimal activity in the pH range from 7.5-9, requires Mg2+ for activity, is inhibited by calcium ions (I0.5 for calcium depends on the concentration of Mg2+ and is 35-180 microM in the presence of 0.5-10 mM Mg2+, respectively), and hydrolyzes AppppA (V = 1, Km = 1 microM), ApppppA (V = 0.42, Km = 1.8 microM), AppppppA (V = 0.34), AppppU (V = 0.73), AppppC (V = 0.67), AppppG (V = 0.27), and ppppA. ATP was always one of the products of the reactions catalyzed by the enzyme. Dinucleoside di- and triphosphates, ATP, cAMP, and p-nitrophenylthymidine 5'-phosphate were not hydrolyzed by the enzyme. This enzyme is diadenosine 5',5"'-P1,P4-tetraphosphatase (EC 3.6.1.17). The third hydrolase, composed of one polypeptide chain of a molecular weight of 56,000, exhibits maximal activity at pH 9-10.5, does not require Mg2+ ions for activity, is inhibited neither by divalent cations (Mg2+, Ca2+, Zn2+, Co2+, Mn2+, or Ni2+) nor by EDTA, and uses as substrates all compounds which are substrates for the diadenosine 5',5"'-P1,P3-triphosphatase and diadenosine 5',5"'-P1,P4-tetraphosphatase. In addition, the enzyme hydrolyzes p-nitrophenyl-thymidine 5'-phosphate, p-nitrophenylthymidine 3'-phosphate, bis-p-nitrophenylphosphate, ADP, AppA, NAD, NADP, and FAD, but not cAMP. With the exception of p-nitrophenylphosphate derivatives all other substrates of the enzyme yield AMP as one of the products of hydrolysis. This enzyme has a specificity similar to that of phosphodiesterases (EC 3.1.4.1) from other sources. With the lupin phosphodiesterase, ApppA (V = 1, Km = 2.2 microM) and AppppA (V = 1, Km = 2.0 microM) are better substrates than NAD (V = 0.8, Km = 9.6 microM), AppA (V = 0.4), ApppppA (V = 0.6), and AppppppA (V = 0.34).