Abstract

SummaryThe linear ubiquitin chain assembly complex (LUBAC) regulates immune signaling, and its function is regulated by the deubiquitinases OTULIN and CYLD, which associate with the catalytic subunit HOIP. However, the mechanism through which CYLD interacts with HOIP is unclear. We here show that CYLD interacts with HOIP via spermatogenesis-associated protein 2 (SPATA2). SPATA2 interacts with CYLD through its non-canonical PUB domain, which binds the catalytic CYLD USP domain in a CYLD B-box-dependent manner. Significantly, SPATA2 binding activates CYLD-mediated hydrolysis of ubiquitin chains. SPATA2 also harbors a conserved PUB-interacting motif that selectively docks into the HOIP PUB domain. In cells, SPATA2 is recruited to the TNF receptor 1 signaling complex and is required for CYLD recruitment. Loss of SPATA2 increases ubiquitination of LUBAC substrates and results in enhanced NOD2 signaling. Our data reveal SPATA2 as a high-affinity binding partner of CYLD and HOIP, and a regulatory component of LUBAC-mediated NF-κB signaling.

Highlights

  • Modification of proteins with ubiquitin (Ub) constitutes a versatile posttranslational modification that regulates a variety of cellular processes, including receptor signaling, cell cycle progression, and DNA damage responses

  • spermatogenesis-associated protein 2 (SPATA2) Binds CYLD in a B-box-Dependent Manner In cells, CYLD interaction with HOIP depends on the PUB-interacting motif (PIM)-binding pocket within the HOIP PUB domain (Draber et al, 2015; Hrdinka et al, 2016; Takiuchi et al, 2014)

  • CYLD does not contain a discernible PIM within this region and there was no obvious binding between the CYLD USP and HOIP PUB domain, as determined by size-exclusion chromatography (SEC), where CYLD and HOIP eluted in separate fractions (Figure 1D), in vitro pull-downs (Figure S1B), or nuclear magnetic resonance (NMR) spectroscopy using purified proteins

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Summary

Introduction

Modification of proteins with ubiquitin (Ub) constitutes a versatile posttranslational modification that regulates a variety of cellular processes, including receptor signaling, cell cycle progression, and DNA damage responses. Ub signaling controls activation of nuclear factor-kB (NF-kB) and innate immune responses downstream of pattern recognition receptors (PRRs) such as Toll-like receptors (TLRs), nucleotide-oligomerization domain (NOD)-like receptors, and cytokine receptors, such as tumor necrosis factor (TNF) receptor 1 (TNFR1) (Fiil and Gyrd-Hansen, 2014; Jiang and Chen, 2011). Stimulation of these receptors triggers assembly of multi-protein signaling complexes where Ub ligases and deubiquitinases (DUBs) coordinate the deposition of Ub chains linked via lysine 63 (Lys63-Ub) and methionine 1 (Met1-Ub) on protein substrates to orchestrate activation of the TAB-TAK1 and NEMO-IKKa/b kinase complexes, respectively. CYLD is recruited with LUBAC to TNFR1 and NOD2 signaling complexes and trims Ub chains on LUBAC substrates (Draber et al, 2015; Hrdinka et al, 2016; Takiuchi et al, 2014)

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