Self-repairing of rock cracks by microbially induced silicate precipitation
The natural silicate minerals with a ring structure were observed on a tuff breccia outcrop in Okinawa, Japan, appearing to self-repair cracks. Generally, silicate minerals are difficult to dissolve in water and their mechanical strength is relatively higher than that of other natural precipitated minerals, such as carbonate minerals. Therefore, if this natural phenomenon is induced by the microbial activities and can be artificially replicated, it could offer a self-organized geo-improvement technology characterized by insolubility and durability. In this study, the authors determined that this mineral has 26–50% rock mass quality (Q value) and 63–71% surface hardness (L value) compared to the host rock, and its growth rate is 1.21 mm/year. Therefore, this mineral is considered to have a crack repair function as it grows. According to observations by scanning electron microscope, many microorganisms were confirmed to be present in the minerals, and genera of Actinobacteria, Proteobacteria, Cyanobacteria, and others were detected by 16S rRNA analysis. Additionally, experiments using these microorganisms revealed that photoautotrophs and other microbial communities are deeply involved in the production of silicate minerals. These results significantly enhance the potential for developing a silicate-based self-healing technology for weathered and/or cracked rock in nature.
Highlights
The metabolic reactions of microorganisms on and within the surface of rock materials greatly influence mineralization and weathering and are believed to have continued for approximately 4 billion years [18]
We measured the concentrations of silicate minerals in each microbial solution with different OD730 level, and observed the microstructure of photoautotrophic community using a scanning electron microscope (SEM), with the elements map identified through energy dispersive X-ray spectrometry (EDS) analysis
This study focused on silicate minerals in Aguni Island to determine their mechanical characteristics and discuss the relationship between these minerals and microorganisms
Summary
The metabolic reactions of microorganisms on and within the surface of rock materials greatly influence mineralization and weathering and are believed to have continued for approximately 4 billion years [18]. Uenishi et al International Journal of Geo-Engineering (2025) 16:13 attracted worldwide attention [9–11, 23, 37, 42, 45, 47, 50] This approach is called microbially induced carbonate precipitation (MICP) and utilizes microbial metabolism to precipitate minerals such as calcium carbonate in pores and on the surface of soil particles [31, 55]. The possibility of calcium carbonate dissolving under certain conditions cannot be eliminated [12, 44], and the material strength of MICP treated soil is at risk of degradation over time, making durability a persistent challenge, such as modification of the native microbiota, undesirable interactions between microorganisms and rock-forming minerals. New perspectives are required to overcome the limitations of the MICP technologies, including the need to explore alternative approaches rather than relying solely on calcium carbonate-based techniques
502
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- Mar 1, 2013
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438
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- Mar 22, 2016
- BMC Bioinformatics
81
- 10.1111/j.1472-4669.2005.00042.x
- Jan 1, 2005
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2050
- 10.1002/9781118684986
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17
- 10.1007/s11224-016-0750-9
- Mar 30, 2016
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1330
- 10.1046/j.1365-3091.2000.00003.x
- Feb 1, 2000
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64
- 10.1139/e03-044
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2
- 10.1016/j.compgeo.2024.106651
- Aug 6, 2024
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18
- 10.3390/ma7064823
- Jun 23, 2014
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496
- 10.1016/j.enggeo.2005.06.006
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3
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Nutrient-doped synthetic silicates for enhanced weathering, remineralization and fertilization on agricultural lands of global cold regions- A perspective on the research ahead.
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4
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- May 27, 2022
- Environmental Science and Pollution Research
Excessive accumulation of heavy metal(loid)s in agricultural environment usually originates from anthropogenic activities. Both large diversities of emission sources and complexity of plant accumulation challenge the understanding of the site-specific effects of emission sources on heavy metal(loid)s in wheat grains. Herein, both soil samples and wheat grain samples (n = 80) were collected from the farmland of Jiyuan City, China. Soil and grain burdens of heavy metal(loid)s were determined by inductively coupled plasma mass spectrometry (ICP-MS) and/or X-ray fluorescence spectrometry (XRF). The quotients (Q) were developed to indicate relative impacts of industrial plants and traffic to soil sites. Principal component analysis-absolute principal component scores-multivariate linear regression (PCA-APCS-MLR) analysis was conducted to reveal the source contributions to heavy metal(loid)s in grains, considering Q values, soil, and wheat grain data. Results showed that contributions of main sources and factors drastically varied with soil sites, and usually overlapped to different extents. For grain Cd and grain Pb, natural soil silicate (0.066/0.104mg/kg) and iron-bearing minerals (- 0.044/ - 0.174mg/kg) contributed to high extents, while metal smelting activities (0.018/0.019mg/kg) and agronomic activities (- 0.017/ - 0.019mg/kg) unexpectedly posed low or moderate contributions. The pH-mediated availability of soil Cd (0.035mg/kg) and the sand-dust weather (0.028mg/kg) also made considerable contributions to grain Cd. For grain As, both natural soil iron-bearing (- 0.048mg/kg) and silicate minerals (- 0.013mg/kg) made negative contributions. The results benefit to the decision-making of pollution remediation of farmland soils in the regional scales.
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5
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- Oct 1, 2011
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Investigation on Matrix Effects in Silicate Minerals by Laser Ablation-Inductively Coupled Plasma-Mass Spectrometry
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14
- 10.1080/01490451.2014.999293
- Oct 13, 2015
- Geomicrobiology Journal
Peat from four geographically separated peatlands (up to 1,500 km apart) with distinct vegetation across North America was sterilized and inoculated with microbial consortia from either the home site or from the other sites. This reciprocal inoculation microcosm experiment examined how different microbial communities adapted to various peat substrates and how this in turn influenced C-mineralization patterns. The experimental approach allows distinctions to be made as to whether microbial community structure, peat properties, or imposed environmental conditions are primary drivers of peat C mineralization. Two additional inocula collected from other freshwater environments (industrially polluted harbor and lake sediments) were also added to each peat type to investigate the response of clearly disparate microbial communities. We hypothesized that the peat properties, such as substrate quality and physical structure, would dictate microbial community composition and activity, thus inoculations from different sites into the same peat soil would lead to the establishment of very similar microbial communities both phylogenetically and functionally. Post-incubation, the bacterial communities in each site converged towards a similar community regardless of the inoculum source, with the exception of peat inoculated with polluted harbor sediment. Inoculum type had no effect on C mineralization rates compared with controls, except for the two disparate inocula, which had lower rates in all peat types. Variation in microbial community structure measured as nonmetric multidimensional scaling axes scores or richness did not correlate significantly with microbial activity. Overall, these findings suggest that abiotic variables (e.g., pH, aeration, moisture content, and temperature) are the dominant control on peatland microbial activity and community composition, and in natural peatlands the microbial community can quickly adapt to future environmental change.
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17
- 10.1007/s11368-018-2149-2
- Oct 11, 2018
- Journal of Soils and Sediments
Improving knowledge of how soil organic carbon (SOC) mineralization responds to excreta application is essential to better understand whether wetland carbon (C) pools will react to grazing. We investigated microbial activity and community structure in the different treatments of excreta addition experiments to examine how soil C mineralization responds to the excreta input in terms of microbial activities and compositions in wetland soils. The microcosms of mineralization incubation of excreta addition were established. The structure of the microbial community was described by the fatty acid composition of the phospholipids (PLFA). The methylumbelliferyl-linked substrates (MUB) and l-dihydroxyphenylalanine (L-DOPA) substrates were used to investigate the activities of β-glucosidase (BG), N-acetyl-glucosaminidase (NAG), acid phosphatase (AP), cellobiohydrolase (CBH), and phenol oxidase (PO). Excreta addition altered the cumulative C mineralization in swamp meadow (SM) and peatland (PL) soils, but SM was lower than PL. Excreta addition increased the biomass of individual PLFA and the fungi/bacteria ratio, suggesting that microbes are stimulated by nutrients and that the soil microbial community composition is modified by excreta inputs. The hydrolytic enzyme activities were higher in the PL soils than in the SM soils, but the trend was opposite for PO activity. The changes in pH, fungi, actinomycetes (ACT), AP, and CBH after yak fecal input significantly influenced the soil CO2 efflux. Our findings suggest that yak grazing could influence the rate of C cycling in wetland soils by influencing microbial communities, enzyme activities, and soil pH. This study suggest that the yak excreta addition increased cumulative C mineralization in SM and PL soils, and the effect of dung addition was more significant than urine addition. The effect of yak excreta addition on SOC mineralization was related with the soil pH, microorganism structure, and enzyme activity which modified by the excreta addition. Soil pH, fungi, AP, and CBH were positively correlated with SOC mineralization, but ACT was negatively correlated with SOC mineralization. In addition, the changes in C and N sources with yak excreta addition play an important role in altering microbial enzyme activities. The input of yak feces into wetlands because of grazing could increase SOC mineralization and thereby promote C emission.
- Single Report
- 10.2172/1214541
- Sep 30, 2014
Integrated Experimental and Modeling Studies of Mineral Carbonation as a Mechanism for Permanent Carbon Sequestration in Mafic/Ultramafic Rocks
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13
- 10.5004/dwt.2018.21968
- Apr 1, 2018
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A comparative study on phyllosilicate and tectosilicate mineral structural properties
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2
- 10.3390/coatings13040730
- Apr 3, 2023
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Natural silicate minerals have a wide range of applications as green, non-toxic and low-cost materials. In this paper, hydrophilic anti-fog films of silicate minerals were generated via a vacuum evaporation coating method using natural feldspar minerals as raw material. Thermogravimetric analysis shows that the feldspar changes its structure during the coating process, which in turn changes the roughness of the film and improves the hydrophilicity of the film. The hydrophilicity, anti-fogging properties, optical properties and surface morphology of the films were characterized by contact angle measurements, the hydrothermal method, UV-VIS spectrophotometer and atomic force microscopy, respectively. The results show that the mineral films have excellent hydrophilicity. The best anti-fog effect was achieved at a minimum contact angle of 22.3° with water when the thickness of the film was 100 nm. The anti-fog effect gradually decreased with the increasing thickness of the film. The optical transmittance test showed that the film material had a negligible effect on the transmittance of the substrate. When the film thickness was 100 nm, the maximum optical transmittance was 92.2%. This is 4.5% higher than when the film was uncoated, which has a specific visual transmittance effect.
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24
- 10.1016/j.micron.2006.11.004
- Dec 11, 2006
- Micron
WDS versus silicon drift detector EDS: A case report for the comparison of quantitative chemical analyses of natural silicate minerals
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32
- 10.1016/j.gca.2007.12.007
- Dec 23, 2007
- Geochimica et Cosmochimica Acta
Silicate and carbonate mineral weathering in soil profiles developed on Pleistocene glacial drift (Michigan, USA): Mass balances based on soil water geochemistry
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61
- 10.1007/s00253-014-6187-4
- Nov 9, 2014
- Applied Microbiology and Biotechnology
Estuarine and tidal wetlands with high primary productivity and biological activity play a crucial role in coastal nutrient dynamics. Here, to better reveal the effects of extracellular enzymes and microbial community on carbon (C) and nitrogen (N) mineralization, the incubation experiments with different C and N addition patterns to the tidal sediments of the Yangtze Estuary (China) were conducted. The results suggested a significant increase in cumulative CO2 effluxes in the C and CN treatment experiments, while no significant difference in cumulative CO2 effluxes between the N treatment and control (CK) experiments was observed. In addition, the nutrient addition patterns had a great influence on dissolve organic C and N levels, but a small effect on microbial biomass C and N. Microbial community composition and microbial activity were found to be positively correlated with organic C (OC) and the molar ratio of C to N (C/N). Partial correlation analysis, controlling for C/N, supported direct effects of OC on the activity of carbon-cycling extracellular enzymes (cellulase and polyphenol oxidase), while C/N exhibited negatively correlations with urease and Gram-positive bacteria to Gram-negative bacteria (G+/G-). Strong relationships were found between CO2 efflux and mineral nitrogen with the activity of specific enzymes (sucrase, cellulase, and polyphenol oxidase) and abundances of Gram-negative bacteria, arbuscular mycorrhizal fungi, and fungi, suggesting the significant influences of microbial community and enzyme activity on C and N mineralization in the estuarine and tidal wetlands. Furthermore, this study could highlight the need to explore effects of nutrient supply on microbial communities and enzyme activity changes associated with the C and N mineralization in these wetlands induced by the climate change.
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11
- 10.1016/j.envres.2023.116552
- Jul 3, 2023
- Environmental Research
Mechanical properties, durability and environmental assessment of low-carbon cementitious composite with natural fibrous wollastonite
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54
- 10.1016/j.cej.2020.126522
- Aug 3, 2020
- Chemical Engineering Journal
Kinetic evaluation of mineral carbonation of natural silicate samples
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17
- 10.3390/min9100635
- Oct 16, 2019
- Minerals
Wollastonite is a natural silicate mineral that can be used as an agricultural soil amendment. Once in the soil, this mineral undergoes weathering and carbonation reactions, and, under certain soil and field crop conditions, our previous work has shown that this practice leads to accumulation of inorganic carbon (calcium carbonate). Mineral carbonation is the carbon sequestration approach with the greatest potential for sequestration capacity and permanency. Agricultural lands offer vast areas onto which such minerals can be applied, while benefiting crops. This work illustrates a technique to separate wollastonite-containing soils into different fractions. These fractions are characterized separately to determine organic and inorganic content, as well as to determine the chemical and mineral composition. The aim is to detect the fate of wollastonite in agricultural soils, and the fate of weathering/carbonation products in the soil. The soils used in the study were collected from soybean and potato farmlands in Southern Ontario, and from an experimental pilot plot. Soil fractionation was done using sieving, and soil fractions were analyzed by a calcimeter, X-ray diffraction, and loss-on-ignition. Acid digested samples were measured by Inductively Coupled Plasma Mass Spectrometry. Carbonates and wollastonite were enriched by fractionation.
- Research Article
11
- 10.1346/ccmn.2009.0570302
- Jun 1, 2009
- Clays and Clay Minerals
Synthetic siliceous mesoporous materials are of great value in many different applications, including nanotechnology, biotechnology, information technology, and medical fields, but historically the resource materials used in their synthesis have been expensive. Recent efforts have focused on indirect synthesis methods which utilize less expensive silicate minerals as a resource material. The purpose of the present study was to investigate talc, a natural silicate mineral, as one such resource. It was used as raw material to prepare two advanced materials: porous silica (PS) and ordered mesoporous silica (MCM-41). The PS, with a specific surface area of 260 m2/g and bimodal pore-size distribution of 1.2 nm and 3.7 nm, was prepared by grinding and subsequent acid leaching. The MCM-41, with a large surface area of 974 m2/g and a narrow pore-size distribution of 2.8 nm, was obtained using a surfactant, cetyltrimethylammonium bromide (CTAB), by hydrothermal treatment using the as-prepared PS as a source of Si. The two resultant materials were characterized by small angle X-ray diffraction (SAXRD) and wide-angle X-ray diffraction (WAXRD), high-resolution transmission electron microscopy (HRTEM), solid-state magic-angle-spinning nuclear magnetic resonance (MAS NMR), Fourier transform infrared spectroscopy (FTIR), and N2 adsorption-desorption measurements. Based on these measurements, possible processes of transformation of PS from talc, upon acid treatment, and the formation of MCM-41 were investigated systemically. Acid leaching induced the transformation of a rigid layered structure to a nearly amorphous one, with micropores formed by a residual layered structure and mesopores formed from a condensed framework. The MCM-41 was a mixture of silanol groups (Si(SiO)3(OH)) and a condensed Q4 framework structure (Si(SiO)4), with a small amount of remaining Q3 layered structure (Si(SiO)3OMg). The increased Q4/Q3 value confirmed greater polymerization of MCM-41 than of PS. At the low CTAB concentration used (2 wt.%), the highly charged silicate species controlled the surfactant geometry. Charge-density matching, together with the degree of polymerization of the silicates, determined the resultant mesophase.
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