Recommendations for the Standardization of Forensic Microbiological Analysis

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Abstract
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With advances in microbiome research and the continuous advancement of detection technologies, the application of microorganisms in forensic medicine has become increasingly widespread, covering areas such as individual identification, body fluid source inference, biogeographical analysis, postmortem interval estimation, and determination of the cause and location of death. However, due to the lack of a comprehensive standardized system, batch effects and inter-laboratory differences have led to low reproducibility of analysis results. This problem is particularly evident in low-quality forensic samples, which compromise the reliability and evidential value of forensic microbiological analyses. Therefore, based on domestic and international research progress and practical experience, this paper systematically summarizes and discusses the standardization of forensic microbiological analysis, aiming to improve the reliability of results and promote the standardization of forensic microbiological analysis.

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To present recent advances in forensic sciences with omics sciences and new biomarkers for postmortem interval (PMI) estimation. We conducted a narrative review screening PubMed and Scopus databases in the last 10 years (2015-2025) with the following keywords in the title and abstract: "postmortem interval" OR "post-mortem interval" AND "proteomics" OR "proteomic" OR "metabolomics" OR "metabolomic" OR "transcriptomic" OR transcriptomics" OR microRNA" OR "microRNAs" OR "lipidomic". Conventional methods of postmortem interval estimation are presented. Some of the most important studies and molecular techniques in genomics, transcriptomics, proteomics, metabolomics, lipidomics, old and new biomarkers for postmortem interval estimation are summarized. Single-omics or multi-omics, critical issues like data reproducibility and interpretation, judicial validity according to Daubert standard and ethical issues of PMI research are discussed. Postmortem interval estimation continues to be one of the most disputed issues of forensic medicine. Conventional methods for PMI estimation still offer a solid bench for practical means. As single-omics and multi-omics research continues to progress, we will likely discover new biomarkers and innovative techniques. Efforts will focus on identifying biomarkers that can deliver reliable and predictable outcomes, thereby facilitating their general acceptance and admissibility in legal proceedings.

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Accurate estimation of the Post-Mortem Interval (PMI) is critical in forensic investigations, aiding in determining the time of death. However, traditional PMI estimation methods, often reliant on physiological observations and environmental factors, face significant limitations in accuracy and efficiency, especially in field conditions. This paper presents the development of a machine learning (ML) framework designed for real-time PMI estimation, integrating multimodal sensor data to address the challenges encountered in field forensics. Our framework utilizes environmental and physiological features, including body temperature, ambient humidity, and biochemical decomposition markers, to predict PMI with high precision. The ML model, trained on historical forensic data, is deployed on a real-time processing platform, enabling rapid analysis and decision-making in resource- constrained environments. The system is optimized for field operations, incorporating low-power hardware and edge computing capabilities to provide forensic investigators with reliable PMI estimates on-site. Through a series of controlled experiments simulating forensic scenarios, our framework demonstrates a significant improvement in PMI accuracy compared to traditional methods, while maintaining low latency for real-time applications. This research highlights the potential of machine learning to revolutionize forensic practices, offering a scalable and adaptive solution for time-sensitive investigations. Here are some relevant keywords for the development of a machine learning framework for real-time PMI (Post- Mortem Interval) estimation in field forensics: Keywords: Field Forensics, Real-Time Machine Learning, Body Decomposition Stages, Machine Learning in Forensic Science, Artificial Intelligence for PMI Analysis, Sensor Data in PMI Estimation, Deep Learning for PMI Estimation, Automated Forensic Analysis, Data Acquisition in Field Forensics.

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Circular RNAs (circRNAs) are conserved, abundant, stable, and specifically expressed in mammals. The postmortem interval (PMI) estimation is crucial in forensic medicine, particularly for case investigation and civil action. CircRNAs may serve as ideal PMI biomarkers. However, no research has explored PMI estimation in the brain using circRNAs. The total RNA, including circRNA, was sampled from mouse brain tissues at multiple temperatures (4℃, 25℃, and 35℃). The semi-quantitative reverse transcription (RT)-PCR and real-time quantitative PCR (RT-qPCR) were used to test the postmortem degradation levels at different PMIs. As a result, we found circFat3 is highly and specifically expressed in mouse brain tissue, with postmortem levels significantly correlated with PMI across multiple temperatures. In addition, mt-co1 and 28 S rRNA demonstrated stability under various temperature conditions, supporting their use as reliable reference genes for PMI models. Moreover, the error rates showed that the circFat3/28S rRNA model was more accurate at 4℃. The circFat3/mt-co1 and circFat3/28S rRNA models provided slightly better predictions for short-term and long-term PMI, respectively at 25℃, while the circFat3/mt-co1 model was more accurate at 35℃. The combined application of the two reference genes was beneficial primarily for long-term PMI estimation. Furthermore, the validation results confirmed that these models were more accurate for long-term PMI estimation. Thus, our mathematical models were constructed at multiple temperatures based on circFat3 and these two reference genes. Taken together, this is the first study to identify circRNA circFat3 as a novel biomarker that may serve as a complementary tool for PMI estimation.

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In the evolving field of forensic medicine, artificial intelligence (AI) technologies may revolutionize traditional autopsy practices by enhancing the precision and efficiency of postmortem examinations. A review of the literature was carried out on the Pub-med and Scopus search engines by inserting the keywords "artificial intelligence" AND "forensic" AND ("autopsy" OR "crime scene management" OR "forensic odontology" OR "post mortem interval" OR "forensic anthropology" OR "forensic sciences"). The works that analyzed the applications of artificial intelligence in the forensic and autopsy field were analyzed. The results showed the application of different forms of artificial intelligence such as machine learning, deep learning, robotics, artificial neural networks. Various applications are therefore possible in the autopsy field including forensic identification, analysis of radiological data through Virtopsy, estimation of the weapon used through analysis of firearm damage with ballistics, estimation of the Post-Mortem Interval (PMI), forensic toxicology. AI's potential to aid in the precise identification of causes of death, estimation of postmortem intervals. With forensic pathologists facing the constant challenge of making accurate diagnoses under pressure, AI applications can offer much-needed support by reducing subjective judgment and the inherent human error due to fatigue. Therefore, the integration of AI into autopsies, while promising in terms of efficiency and accuracy, demands a careful balance between technological advancement and ethical responsibility to ensure trust and integrity in forensic practices.

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