Abstract

In most hospitals worldwide formalin-fixation and paraffin-embedding (FFPE) is the standard tissue fixation and storage method. The analysis and extraction of full-length and immunoreactive proteins from FFPE tissues was long believed to be impossible due to protein cross-linking during fixation. Nevertheless, in recent years, several research groups have successfully established protocols to extract proteins from FFPE tissues. For use in clinical in vitro diagnostics the extraction protocol should not be too complex and has to be compatible with downstream molecular analysis such as Western-blot, reverse phase protein array, or mass-spectrometry. Here we describe a protocol for protein extraction from FFPE tissues that fulfills these requirements.

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