Predicting buckling behavior of microtubules based on an atomistic-continuum model

Abstract

An atomistic-continuum model is proposed for microtubules. A higher-order gradient continuum constitutive relationship is established, and elasticity and global buckling of microtubules are studied intensively. As a typical macromolecular bio-system, atomic components and structures are much more complicated. Traditional atomistic simulation methods and classical continuum approaches have their own fundamental drawbacks in dealing with this large atomic system. Adopting a homogenization technique, this paper proposes a concept of fictitious bonds for microtubules to link the large atomic structure with continuum description. After selecting a representative unit, the fictitious bond energy equals to the energy stored in the continuum model. The higher-order Cauchy–Born rule is used to approximate the deformation of fictitious bonds under arbitrary loading conditions. A mesh-free numerical scheme is specifically developed for modeling computation. The elastic modulus and critical compressive force are predicted. Representative case studies are presented, and some results are obtained and discussed.