Phosphate-Solubilizing Rhizosphere Bacteria Enhancing Phosphorus Uptake and Maize Yield in Dyked Alluvial Soil

Low soil phosphorus availability is a primary constraint for plant growth in many terrestrial ecosystems. Lateral root initiation and elongation may play an important role in the uptake of immobile nutrients, such as phosphorus, by increasing soil exploration and phosphorus solubilisation. The overall objective of this study was to assess the value of lateral rooting for phosphorus acquisition through assessment of the 'benefit' of lateral rooting for phosphorus uptake and the 'cost' of lateral roots in terms of root respiration and phosphorus investment at low and high phosphorus availability. Five recombinant inbred lines (RILs) of maize derived from a cross between B73 and Mo17 with contrasting lateral rooting were grown in sand culture in a controlled environment. Genotypes with enhanced or sustained lateral rooting at low phosphorus availability had greater phosphorus acquisition, biomass accumulation, and relative growth rate (RGR) than genotypes with reduced lateral rooting at low phosphorus availability. The association of lateral root development and plant biomass accumulation under phosphorus stress was not caused by allometry. Genotypes varied in the phosphorus investment required for lateral root elongation, owing to genetic differences in specific root length (SRL, which was correlated with root diameter) and phosphorus concentration of lateral roots. Lateral root extension required less biomass and phosphorus investment than the extension of other root types. Relative growth rate was negatively correlated with specific root respiration, supporting the hypothesis that root carbon costs are an important aspect of adaptation to low phosphorus availability. Two distinct cost-benefit analyses, one with phosphorus acquisition rate as a benefit and root respiration as a cost, the other with plant phosphorus accumulation as a benefit and phosphorus allocation to lateral roots as a cost, both showed that lateral rooting was advantageous under conditions of low phosphorus availability. Our data suggest that enhanced lateral rooting under phosphorus stress may be harnessed as a useful trait for the selection and breeding of more phosphorus-efficient maize genotypes.

Basal root whorl number: a modulator of phosphorus acquisition in common bean (Phaseolus vulgaris).

The relationship between mycorrhizal colonisation and phosphorus acquired by seedlings of the arbuscular mycorrhizal tree Oubanguia alata Bak f. (Scytopetalaceae) and the ectomycorrhizal tree Tetraberlinia moreliana Aubr. (Caesalpiniodeae) was evaluated at low and high inorganic phosphorus availability. AM colonisation was positively correlated with phosphorus uptake by O. alata at low, but not at high phosphorus availability. Seedlings growth was positively related to arbuscular mycorrhizal colonisation at both low and high phosphorus availability, suggesting that growth promotion by arbuscular mycorrhizas is not simply related to an increase of phosphorus uptake. In contrast, phosphorus uptake by T. moreliana was correlated with EM colonisation at both low and high phosphorus availability, but there was no relationship between growth and ectomycorrhizal colonisation. Promotion of phosphorus uptake by arbuscular mycorrhizas and ectomycorrhizas at low phosphorus availability is consistent with the co-occurrence of the two types of mycorrhiza in tropical rain forests where available soil phosphorus is low. However, ectomycorrhizal colonisation may also be of advantage where inputs of phosphorus rich litter raise the phosphorus status of the soil, as seen in the groves of ectomycorrhizal trees in Korup National Park, and may be one of the factors reinforcing local dominance by these trees.

Root hairs are presumably important in the acquisition of immobile soil resources such as phosphorus. The density and length of root hairs vary substantially within and between species, and are highly regulated by soil phosphorus availability, which suggests that at high nutrient availability, root hairs may have a neutral or negative impact on fitness. We used a root-hairless mutant of the small herbaceous dicot Arabidopsis thaliana to assess the effect of root hairs on plant competition under contrasting phosphorus regimes. Wildtype plants were grown with hairless plants in a replacement series design at high (60 μm phosphate in soil solution) and low (1 μm phosphate in soil solution) phosphorus availability. At high phosphorus availability, wildtype and mutant plants were equal in growth, phosphorus acquisition, fecundity and relative crowding coefficient (RCC). At low phosphorus availability, hairless plants accumulated less biomass and phosphorus, and produced less seed when planted with wildtype plants. Wildtype plants were unaffected by the presence of hairless plants in mixed genotype plantings. Wildtype plants had RCC values greater than one while hairless plants had RCC values less than one. We conclude that root hairs increase the competitiveness of plants under low phosphorus availability but do not reduce growth or competitiveness under high phosphorus availability.

Arabidopsis thaliana root hairs grow longer and denser in response to low-phosphorus availability. In addition, plants with the root hair response acquire more phosphorus than mutants that have root hairs that do not respond to phosphorus limiting conditions. The purpose of this experiment was to determine the efficiency of root hairs in phosphorus acquisition at high- and low-phosphorus availability. Root hair growth, root growth, root respiration, plant phosphorus uptake, and plant phosphorus content of 3-wk-old wild-type Arabidopsis (WS) were compared to two root hair mutants (rhd6 and rhd2) under high (54 mmol/m) and low (0.4 mmol/m) phosphorus availability. A cost-benefit analysis was constructed from the measurements to determine root hair efficiency. Under high-phosphorus availability, root hairs did not have an effect on any of the parameters measured. Under low-phosphorus availability, wild-type Arabidopsis had greater total root surface area, shoot biomass, phosphorus per root length, and specific phosphorus uptake. The cost-benefit analysis shows that under low phosphorus, wild-type roots acquire more phosphorus for every unit of carbon respired or unit of phosphorus invested into the roots than the mutants. We conclude that the response of root hairs to low-phosphorus availability is an efficient strategy for phosphorus acquisition.

A common response to low phosphorus availability is increased relative biomass allocation to roots. The resulting increase in root:shoot ratio presumably enhances phosphorus acquisition, but may also reduce growth rates by diverting carbon to the production of heterotrophic rather than photosynthetic tissues. To assess the importance of increased carbon allocation to roots for the adaptation of plants to low P availability, carbon budgets were constructed for four common bean genotypes with contrasting adaptation to low phosphorus availability in the field ("phosphorus efficiency"). Solid-phase-buffered silica sand provided low (1 microM), medium (10 microM), and high (30 microM) phosphorus availability. Compared to the high phosphorus treatment, plant growth was reduced by 20% by medium phosphorus availability and by more than 90% by low phosphorus availability. Low phosphorus plants utilized a significantly larger fraction of their daytime net carbon assimilation on root respiration (c. 40%) compared to medium and high phosphorus plants (c. 20%). No significant difference was found among genotypes in this respect. Genotypes also had similar rates of P absorption per unit root weight and plant growth per unit of P absorbed. However, P-efficient genotypes allocated a larger fraction of their biomass to root growth, especially under low P conditions. Efficient genotypes had lower rates of root respiration than inefficient genotypes, which enabled them to maintain greater root biomass allocation than inefficient genotypes without increasing overall root carbon costs.

A common response to low phosphorus availability is increased relative biomass allocation to roots. The resulting increase in root:shoot ratio presumably enhances phosphorus acquisition, but may also reduce growth rates by diverting carbon to the production of heterotrophic rather than photosynthetic tissues. To assess the importance of increased carbon allocation to roots for the adaptation of plants to low P availability, carbon budgets were constructed for four common bean genotypes with contrasting adaptation to low phosphorus availability in the field ("phosphorus efficiency"). Solid-phase-buffered silica sand provided low (1 microM), medium (10 microM), and high (30 microM) phosphorus availability. Compared to the high phosphorus treatment, plant growth was reduced by 20% by medium phosphorus availability and by more than 90% by low phosphorus availability. Low phosphorus plants utilized a significantly larger fraction of their daytime net carbon assimilation on root respiration (c. 40%) compared to medium and high phosphorus plants (c. 20%). No significant difference was found among genotypes in this respect. Genotypes also had similar rates of P absorption per unit root weight and plant growth per unit of P absorbed. However, P-efficient genotypes allocated a larger fraction of their biomass to root growth, especially under low P conditions. Efficient genotypes had lower rates of root respiration than inefficient genotypes, which enabled them to maintain greater root biomass allocation than inefficient genotypes without increasing overall root carbon costs.

Low phosphorus availability is a primary constraint for plant growth in terrestrial ecosystems. Lateral root initiation and elongation may play an important role in the uptake of immobile nutrients such as phosphorus by increasing soil exploration and phosphorus acquisition. The objective of this study was to identify quantitative trait loci (QTLs) controlling lateral root length (LRL), number (LRN), and plasticity of the primary seedling root of maize under varying phosphorus availability. Using a cigar roll culture in a controlled environment, we evaluated primary root LRL and LRN at low and high phosphorus availability in 160 recombinant inbred lines (RILs) derived from a cross between maize genotypes B73 and Mo17, which have contrasting adaptation to low phosphorus availability in the field. Low phosphorus availability increased LRL by 19% in Mo17, the phosphorus-efficient parent, but significantly decreased LRL in B73, the phosphorus-inefficient genotype. Substantial genetic variation and transgressive segregation for LRL and LRN existed in the population. The plasticity of LRL ranged from -100% to 146.3%, with a mean of 30.4%, and the plasticity of LRN ranged from -82.2% to 164.1%, with a mean of 18.5%. On the basis of composite interval mapping with a LOD threshold of 3.27, one QTL was associated with LRN plasticity, five QTLs were associated with LRL and one QTL was associated with LRN under high fertility. Under low fertility, six QTLs were associated with LRL and one QTL with LRN. No QTLs were detected for plasticity of LRL. A number of RILs exceeded Mo17, the phosphorus-efficient parent, for LRL, LRN, and plasticity. The detection of QTLs for these traits, in combination with the observation of transgressive segregants in our population, indicates that favorable alleles can be combined to increase seedling lateral root growth in maize.

IntroductionSoybean adapts to phosphorus-deficient soils through three important phosphorus acquisition strategies, namely altered root conformation, exudation of carboxylic acids, and symbiosis with clumping mycorrhizal fungi. However, the trade-offs and regulatory mechanisms of these three phosphorus acquisition strategies in soybean have not been researched.MethodsIn this study, we investigated the responses of ten different soybean varieties to low soil phosphorus availability by determining biomass, phosphorus accumulation, root morphology, exudation, and mycorrhizal colonization rate. Furthermore, the molecular regulatory mechanisms underlying root phosphorus acquisition strategies were examined among varieties with different low-phosphorus tolerance using transcriptome sequencing and weighted gene co-expression network analysis.Results and discussionThe results showed that two types of phosphorus acquisition strategies—“outsourcing” and “do-it-yourself”—were employed by soybean varieties under low phosphorus availability. The “do-it-yourself” varieties, represented by QD11, Zh30, and Sd, obtained sufficient phosphorus by increasing their root surface area and secreting carboxylic acids. In contrast, the “outsourcing” varieties, represented by Zh301, Zh13, and Hc6, used increased symbiosis with mycorrhizae to obtain phosphorus owing to their large root diameters. Transcriptome analysis showed that the direction of acetyl-CoA metabolism could be the dividing line between the two strategies of soybean selection. ERF1 and WRKY1 may be involved in the regulation of phosphorus acquisition strategies for soybeans grown under low P environments. These findings will enhance our understanding of phosphorus acquisition strategies in soybeans. In addition, they will facilitate the development of breeding strategies that are more flexible to accommodate a variety of production scenarios in agriculture under low phosphorus environments.

BackgroundLow phosphorus availability is a major factor limiting rice productivity. Since root traits determine phosphorus acquisition efficiency, they are logical selection targets for breeding rice with higher productivity in low phosphorus soils. Before using these traits for breeding, it is necessary to identify genetic variation and to assess the plasticity of each trait in response to the environment. In this study, we measured phenotypic variation and effect of phosphorus deficiency on root architectural, morphological and anatomical traits in 15 rice (Oryza sativa) genotypes. Rice plants were grown with diffusion-limited phosphorus using solid-phase buffered phosphorus to mimic realistic phosphorus availability conditions.ResultsShoot dry weight, tiller number, plant height, number of nodal roots and shoot phosphorus content were reduced under low phosphorus availability. Phosphorus deficiency significantly reduced large lateral root density and small and large lateral root length in all genotypes, though the degree of plasticity and relative allocation of root length between the two root classes varied among genotypes. Root hair length and density increased in all genotypes in response to low phosphorus. Nodal root cross-sectional area was significantly less under low phosphorus availability, and reduced cortical area was disproportionately responsible for this decline. Phosphorus deficiency caused a 20 % increase in the percent cortical area converted to aerenchyma. Total stele area and meta-xylem vessel area responses to low phosphorus differed significantly among genotypes. Phosphorus treatment did not significantly affect theoretical water conductance overall, but increased or reduced it in a few genotypes. All genotypes had restricted water conductance at the base of the nodal root compared to other positions along the root axis.ConclusionsThere was substantial genetic variation for all root traits investigated. Low phosphorus availability significantly affected most traits, often to an extent that varied with the genotype. With the exception of stele and meta-xylem vessel area, root responses to low phosphorus were in the same direction for all genotypes tested. Therefore, phenotypic evaluations conducted with adequate fertility should be useful for genetic mapping studies and identifying potential sources of trait variation, but these should be confirmed in low-phosphorus environments.Electronic supplementary materialThe online version of this article (doi:10.1186/s12284-016-0102-9) contains supplementary material, which is available to authorized users.

Low phosphorus (P) availability is a major constraint for chickpea production. Consequently, P-efficient genotypes can improve productivity under conditions where the higher application of P is not economical. This study was conducted to characterise four chickpea genotypes for nutrient uptake and use efficiency under low-P conditions over two growing seasons. At flowering stage, plants were harvested and analysed for their nodulation, growth, P content and yield. Results indicate that low P availability significantly limited plant growth, nodulation and yield for all genotypes with the greatest effect on for Flip 84-92C and Flip 01-29C. The genotypes Flip 90-13C and ILC 32-79 showed the highest P uptake and use efficiency. The genotypes with high nutrient uptake had better efficiency in use of rhizobial symbiosis. It is concluded that nutrient uptake and use efficiency may be an important functional trait that may contribute to the selection of cultivars able to produce high quality seeds and efficiently fix nitrogen under conditions of low soil P.

Main conclusionNutrient availability, namely soil phosphorus, modulates trade-offs between constitutive and induced defences in maritime pine, with high phosphorus weakening these trade-offs and shaping plant allocation to different defensive strategies.Abiotic factors modulate trade-offs between plant functions, but their influence on trade-offs between constitutive and induced defences remains poorly understood. We tested for such trade-offs in maritime pine (Pinus pinaster) and examined whether soil phosphorus availability affected these defensive correlations. We conducted a greenhouse experiment with six-month-old pine seedlings from 33 half-sib families, exposing half of the plants from each family to either low or high soil phosphorus availability, one of the main limiting factors for pine development in the study region. Within each fertilization group, we applied jasmonic acid to induce defences in half of the plants per family. Defensive traits measured included resin production and phenolic compound levels. As predicted, we found significant negative correlations between constitutive and induced defences for both defensive traits under low phosphorus availability. However, these correlations were absent under high phosphorus conditions, indicating that overabundance of this nutrient weakened defensive allocation constraints. These findings highlight the role of nutrient availability in shaping plant defence allocation constraints, potentially shaping the correlated evolution of plant defensive strategies.Supplementary InformationThe online version contains supplementary material available at 10.1007/s00425-025-04813-y.

Increasing fertilizer consumption has led to low fertilizer use efficiency and environmental problems. Identifying nutrient-efficient genes will facilitate the breeding of crops with improved fertilizer use efficiency. This research performed a genome-wide sequence analysis of the A (NFYA), B (NFYB), and C (NFYC) subunits of Nuclear Factor Y (NF-Y) in wheat (Triticum aestivum) and further investigated their responses to nitrogen and phosphorus availability in wheat seedlings. Sequence mining together with gene cloning identified 18 NFYAs, 34 NFYBs, and 28 NFYCs. The expression of most NFYAs positively responded to low nitrogen and phosphorus availability. In contrast, microRNA169 negatively responded to low nitrogen and phosphorus availability and degraded NFYAs. Overexpressing TaNFYA-B1, a low-nitrogen- and low-phosphorus-inducible NFYA transcript factor on chromosome 6B, significantly increased both nitrogen and phosphorus uptake and grain yield under differing nitrogen and phosphorus supply levels in a field experiment. The increased nitrogen and phosphorus uptake may have resulted from the fact that that overexpressing TaNFYA-B1 stimulated root development and up-regulated the expression of both nitrate and phosphate transporters in roots. Our results suggest that TaNFYA-B1 plays essential roles in root development and in nitrogen and phosphorus usage in wheat. Furthermore, our results provide new knowledge and valuable gene resources that should be useful in efforts to breed crops targeting high yield with less fertilizer input.

Introduction This study aimed to investigate the effects of nitrification inhibitors (NIs), specifically DMPP (Dimethyl pyrazole phosphate) and DMPFA (Dimethyl pyrazole fulvic acid), and plant growth-promoting microorganisms (PGPM) on nutrient uptake, allocation, and plant growth in maize under low phosphorus (P) availability. The research questions explored whether NIs enhance P, manganese (Mn), and zinc (Zn) uptake through rhizosphere acidification, alter nutrient partitioning between roots and shoots, and whether DMPFA-PGPM combinations synergistically improve plant growth and nutrient acquisition. Methods Two rhizobox experiments were conducted using silt loam soil with low P content (8.7 mg kg −1 P-CAL, pH 6.4). Results In the first experiment, maize was subjected to ten treatments, including ammonium (NH 4 + ) and nitrate (NO3 −) with or without DMPP, DMPFA, and rock phosphate (RP), compared to controls. The second experiment tested five treatments, including NH 4 + with DMPFA, fulvic acid, and Bacillus atrophaeus (ABi05) as PGPM. Measurements included rhizosphere pH, acid/alkaline phosphatase activity, root exudates, phytohormones, root morphology, plant biomass, and nutrient (P, Mn, Zn, Fe, Ca, Mg, K) concentrations in shoots and roots. Nutrient use efficiencies (PUE, PFPp, NRE) were calculated, and data were analyzed using one-way ANOVA with Fisher’s LSD test (p<0.05). In the first experiment, DMPP+RP and DMPFA+RP treatments increased biomass by 31.8% and 38.5%, respectively, compared to the negative control, with total root length rising by up to 169.5% in the positive control (NO 3 −+soluble P). Shoot Fe content was 60% higher in NI treatments, with Mn and Zn shoot concentrations increasing by up to 40.4% and 32.8%, respectively, in DMPFA treatments. The rhizosphere pH dropped by 0.5 units in NI treatments, thereby enhancing acid phosphatase activity. In the second experiment, DMPFA and DMPFA+ABi05 increased shoot biomass by 47.5% and 50.7%, respectively, and shoot P content by 45.1% and 62.7%. PUE was 56.2% higher with DMPFA+ABi05, and zeatin concentrations rose by 79.1% compared to controls. Conclusion DMP-based NIs significantly enhance P, Mn, and Zn uptake in maize by acidifying the rhizosphere and increasing nutrient solubility. NIs shift mainly Fe and Mn allocation toward shoots, improving nutrient mobilization. The synergistic effect of DMPFA and PGPM (ABi05) further boosts PUE and Zeatin.

In soybean and common bean, enhanced topsoil foraging permitted by shallow root architectures is advantageous for phosphorus acquisition from stratified soils. The importance of this phenomenon in graminaceous crops, which have different root architecture and morphology from legumes, is unclear. In this study we evaluated the importance of shallow roots for phosphorus acquisition in maize (Zea mays L.). In a field study, maize genotypes with shallower roots had greater growth in low phosphorus soil than deep-rooted genotypes. For physiological analysis, four maize genotypes differing in root shallowness in the field were grown in solid media with stratified phosphorus availability in a controlled environment. Of the four genotypes, one shallow and one deep genotype were also inoculated with arbuscular mycorrhiza (AM). Shallower genotypes had significantly greater growth and phosphorus accumulation compared with deeper genotypes at low phosphorus availability. Mycorrhizal colonisation altered root shallowness under low phosphorus conditions, increasing shallowness substantially in a deep-rooted genotype but slightly decreasing shallowness in a shallow-rooted genotype. Mycorrhizal colonisation increased phosphorus acquisition under low phosphorus availability. Respiration costs of roots and shoots of phosphorus-efficient genotypes were significantly lower under low phosphorus conditions compared with inefficient genotypes. The physiological efficiency of phosphorus acquisition, expressed as root respiration per unit of phosphorus acquisition, was greater in shallow rooted genotypes. Our results demonstrate that genetic variation for root shallowness exists in maize, that phosphorus and AM can modulate root shallowness independently, and that a shallower root system is beneficial for plant performance in maize at low phosphorus availability. We propose that root architectural traits that enhance topsoil foraging are important traits for improved phosphorus acquisition efficiency of annual grain crops such as maize in addition to legumes.