Abstract

The allocation of a (treatment) condition-effect on the wrong principal component (misallocation of variance) in principal component analysis (PCA) has been addressed in research on event-related potentials of the electroencephalogram. However, the correct allocation of condition-effects on PCA components might be relevant in several domains of research. The present paper investigates whether different loading patterns at each condition-level are a basis for an optimal allocation of between-condition variance on principal components. It turns out that a similar loading shape at each condition-level is a necessary condition for an optimal allocation of between-condition variance, whereas a similar loading magnitude is not necessary.

Highlights

  • 1.1 Condition Effects in Principal Component AnalysisPrincipal component analysis (PCA) has regularly been performed for the analysis of event-related potentials of the electroencephalogram (Dien, Khoe & Mangun, 2007; Dien, 2010; Kayser & Tenke, 2003, 2005)

  • According to Wood and McCarthy (1984) misallocation of variance occurs when a single between-condition effect that can in principle be allocated on a single principal component analysis (PCA) component is allocated on more than one component in a given PCA solution

  • The present study describes constraints that are to be imposed on the component loading matrices in order to avoid misallocation of variance

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Summary

Condition Effects in Principal Component Analysis

Principal component analysis (PCA) has regularly been performed for the analysis of event-related potentials of the electroencephalogram (Dien, Khoe & Mangun, 2007; Dien, 2010; Kayser & Tenke, 2003, 2005). In the context of event-related potentials, PCA is often performed for observed variables representing k levels of at least one (experimental) condition factor, so that the components represent a mixture of the between- and within-condition variance. (experimental) condition factors occur in several areas of research and PCA is performed in several areas of research and has been adapted to several different methodological contexts (Jolliffe & Cadima, 2016). It is interesting to know how experimental condition effects are optimally allocated on principal components

Misallocation of Between-condition Variance
Aims of the Present Paper
Definitions
Misallocation of Variance and Component Rotation
Discussion

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