Abstract

Strong competition between cytotoxic T-lymphocytes (CTLs) specific for different epitopes in human immunodeficiency virus (HIV) infection would have important implications for the design of an HIV vaccine. To investigate evidence for this type of competition, we analysed CTL response data from 97 patients with chronic HIV infection who were frequently sampled for up to 96 weeks. For each sample, CTL responses directed against a range of known epitopes in gag, pol and nef were measured using an enzyme-linked immunospot assay. The Lotka–Volterra model of competition was used to predict patterns that would be expected from these data if competitive interactions materially affect CTL numbers. In this application, the model predicts that when hosts make responses to a larger number of epitopes, they would have diminished responses to each epitope and that if one epitope-specific response becomes dramatically smaller, others would increase in size to compensate; conversely if one response grows, others would shrink. Analysis of the experimental data reveals results that are wholly inconsistent with these predictions. In hosts who respond to more epitopes, the average epitope-specific response tends to be larger, not smaller. Furthermore, responses to different epitopes almost always increase in unison or decrease in unison. Our findings are therefore inconsistent with the hypothesis that there is competition between CTL responses directed against different epitopes in HIV infection. This suggests that vaccines that elicit broad responses would be favourable because they would direct a larger total response against the virus, in addition to being more robust to the effects of CTL escape.

Highlights

  • In human immunodeficiency virus-1 (HIV-1) infection, the cytotoxic T-lymphocyte (CTL) response is typically focused towards a handful of epitopes (Scherer et al 2004)

  • We compared CTL response data with model predictions of how the mean response per epitope should correlate with the breadth of the response and how large changes in the response to one epitope should correlate with changes in the response to other epitopes

  • We found that the mean response per epitope increases as the breadth of the response increases and that large expansions in the response to one epitope correlate with expansions in the response to other epitopes. Both of these results are in contrast to the predictions made using the Lotka–Volterra model under the assumption of competition between CTLs specific for different epitopes

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Summary

INTRODUCTION

In human immunodeficiency virus-1 (HIV-1) infection, the cytotoxic T-lymphocyte (CTL) response is typically focused towards a handful of epitopes (Scherer et al 2004). We investigate evidence for competition between CTL responses specific for different epitopes in HIV-1 infection by analysing CTL responses made by 97 chronically infected HIV-1 patients who were enrolled onto an intermittent therapy trial. Since changes in the CTL response could occur in response to changes in viral load caused by therapy interruption, only data from week 50 and beyond were analysed for this part of the study. The sum of the responses to all other epitopes rose from 815 to 4292 SFCs/106 PBMC (an increase of 3477 SFCs/106 PBMCs), it is these two vectors (þ2817 and þ3477) that represent the longitudinal data from this patient (raw data in spreadsheet S1 and this analysis in the electronic supplementary material, table S1c). The model can be expressed as a set of ordinary differential equations (equation (2.1))

Ni Ki
Findings
DISCUSSION
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