Abstract

Histological assessment of glands is one of the major concerns in colon cancer grading. Considering that poorly differentiated colorectal glands cannot be accurately segmented, we propose an approach for segmentation of glands in colon cancer images, based on the characteristics of lumens and rough gland boundaries. First, we use a U-net for stain separation to obtain H-stain, E-stain, and background stain intensity maps. Subsequently, epithelial nucleus is identified on the histopathology images, and the lumen segmentation is performed on the background intensity map. Then, we use the axis of least inertia-based similar triangles as the spatial characteristics of lumens and epithelial nucleus, and a triangle membership is used to select glandular contour candidates from epithelial nucleus. By connecting lumens and epithelial nucleus, more accurate gland segmentation is performed based on the rough gland boundary. The proposed stain separation approach is unsupervised, and the stain separation makes the category information contained in the H&E image easy to identify and deal with the uneven stain intensity and the inconspicuous stain difference. In this project, we use deep learning to achieve stain separation by predicting the stain coefficient. Under the deep learning framework, we design a stain coefficient interval model to improve the stain generalization performance. Another innovation is that we propose the combination of the internal lumen contour of adenoma and the outer contour of epithelial cells to obtain a precise gland contour. We compare the performance of the proposed algorithm against that of several state-of-the-art technologies on publicly available datasets. The results show that the segmentation approach combining the characteristics of lumens and rough gland boundary has better segmentation accuracy.

Highlights

  • IntroductionColon cancer may be caused by epithelium (lumens of blood vessels, organs, and surface tissues), called adenocarcinoma (malignant tumor formed by gland structures in epithelial tissues) [1]

  • Colon cancer may be caused by epithelium, called adenocarcinoma [1]

  • Slices belong to different patients, and they are processed in different laboratory environments. e dataset has a very diverse diversity in a staining distribution and an organizational structure. e pathological slices are scanned through the whole slice to obtain a digital picture with a pixel precision of 0.465 microns. e full-frame image is readjusted to a pixel precision of 0.620 microns. en, we crop them randomly to a size of 128 × 128 and augment them to 22000 pieces for training and verification of the models. e nucleus is manually annotated by an experienced pathologist. is study needs to identify epithelial nucleus, so the nuclear annotation is divided into epithelial nucleus and others

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Summary

Introduction

Colon cancer may be caused by epithelium (lumens of blood vessels, organs, and surface tissues), called adenocarcinoma (malignant tumor formed by gland structures in epithelial tissues) [1]. Features are extracted from the histopathology image by the network described above and passed to a number of subbranches that predict the intensity of the stain of each pixel and the parameters (mean and variance) of a series of Gaussian distributions. Lumen and Rough Gland Boundary Feature Representation Based on the ALI (Axis of Least Inertia). Its physical meaning is that the rotational inertia of the graph around this axis is the smallest. It is the only reference line for representing the shape of the target. In order to describe the outline of the shape, the structure-based shape descriptor commonly used in the boundary description method is mainly a chain: this is a widely used descriptor, and its role is to use the outline of the shape with directions

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