Morphological Diversity of Isolated Mycobacterial Cultures in the Republic of Kazakhstan: Implications for Diagnostics and Treatment

How much carbon is sequestered during the restoration of tropical forests? Estimates from tree species in the Brazilian Atlantic forest

The evolution of increased competitive ability (EICA) hypothesis proposes that invasive species evolve decreased defense and increased competitive ability following natural enemy release. Previous studies have found evidence both for and against EICA. The resource-enemy release hypothesis (R-ERH) suggests that fast-growing species may experience stronger enemy release than slow-growing species. On the basis of R-ERH, the prediction of EICA will be held true for slow-growing genotypes, i.e., the slow-growing genotypes from the introduced range will be less resistant to herbivory and grow faster than those from the home range; while the EICA will not be held for fast-growing genotypes, i.e., there will be no significant differences in growth and defense traits between the introduced and native fast-growing genotypes. We tested these predictions preliminarily using five populations of the invasive plant Alternanthera philoxeroides. This species has two varieties in its home range, which showed a distinct growth-defense strategy: the northern A. p. var. acutifolia (Apa) had higher growth rate but lower resistance, while the southern A. p. var. obtusifolia (Apo) had lower growth rate but higher resistance level. Our results suggest that the EICA hypothesis is consistent with the slow-growing Apo, but not with the fast-growing Apa. We suggest that evolutionary changes in growth or resistance following enemy release are influenced by variation in growth rate within an invasive alien plant. These findings have important implications for the EICA hypothesis, and may partially explain why previous studies have found evidence both for and against EICA.

Plants forage for nutrients by increasing their root length density (RLD) in nutrient-rich soil microsites through root morphological changes resulting in increased root biomass density (RBD), specific root length (SRL), or branching frequency (BF). It is commonly accepted that fast-growing species will forage more than slow-growing species. However, foraging responses may be due solely to differences in relative growth rates (RGR). There is little evidence, after the effects of RGR are removed, that the fast versus slow foraging theory is correct. In a pot study, we evaluated foraging of four grass species that differed in RGR: one fast-growing annual species, Bromus diandrus, two intermediate-growing species, annual Bromus hordeaceus and perennial Elymus glaucus, and one slow-growing perennial species, Nassella pulchra. We harvested plants either at a common time (plants varied in size) or at a common leaf number (plants similar size, surrogate for common biomass). By evaluating species at a common time, RGR influenced foraging. Conversely, by evaluating species at a common leaf number, foraging could be evaluated independent of RGR. When RGR was allowed to contribute to foraging (common time harvest), foraging and RGR were positively correlated. B. diandrus (fast RGR) foraged to a greater extent than did E. glaucus (intermediate RGR) and N. pulchra (slow RGR). E. glaucus (intermediate RGR) foraged to a greater extent than N. pulchra (slow RGR). Root growth within nutrient-rich microsites was due to significant increases in RBD, not to modifications of SRL or BF. However, when RGR was not allowed to influence foraging (common leaf number harvest), none of the four species significantly enhanced RLD in nutrient-rich compared to control microsites. This suggests that RGR strongly influenced the ability of these grass species to forage and also supports the need to evaluate plastic root traits independent of RGR.

In this paper we address the question why slow-growing grass species appear to take up nitrate with greater respiratory costs than do fast-growing grasses when all plants are grown with free access to nutrients. Specific costs for nitrate transport, expressed as moles of ATP per net mole of nitrate taken up, were 1.5 to 4 times higher in slow-growing grasses than in fast-growing ones (Scheurwater et al., 1998, Plant, Cell & Environ. 21, 995–1005). The net rate of nitrate uptake is determined by two opposing nitrate fluxes across the plasma membrane: influx and efflux. To test whether differences in specific costs for nitrate transport are due to differences in the ratio of nitrate influx to net rate of nitrate uptake, nitrate influx and the net rate of nitrate uptake were measured in the roots of two fast-growing ( Dactylis glomerata L. and Holcus lanatus L.) and two slow-growing (Deschampsia flexuosa L. and Festuca ovina L.) grass species at four points during the diurnal cycle, using 15NO3 -. Efflux was calculated by subtraction of net uptake from influx; it was assumed that efflux of nitrogen represents the flux of nitrate. Transfer of the plants to the solution containing the labelled nitrate did not significantly affect nitrate uptake in the present grass species. The net rate of nitrate uptake was highest during the middle of the light period in all species. Diurnal variation in the net rate of nitrate uptake was mostly due to variation in nitrate influx. Variation in nitrate efflux did not occur in all species, but efflux per net mole of nitrate taken up was higher during darkness than in the light in the slow-growing grasses. The two fast-growing species, however, did not show diurnal variation in the ratio of efflux to net nitrate uptake. Integrated over 24 hours, the slow-growing grasses clearly exhibited higher ratios of influx to net uptake than the fast-growing grass species. Our results indicate that the higher ratio of nitrate influx to net nitrate uptake can account for higher specific costs for nitrate transport in slow-growing grass species compared with those in their fast-growing counterparts, possibly in combination with greater activity of the non-phosphorylating alternative respiratory path. Therefore, under our experimental conditions with plants grown at a non-limiting nitrate supply, nitrate uptake is less efficient (from the point of ATP consumption) in slow-growing grasses than in fast-growing grass species.

Streptococcus pneumoniae undergoes phase variation in colony morphology, which has been implicated as a factor in the pathogenesis of pneumococcal disease. Phenotypic differences between opaque and transparent colony forms correlate with differences in rates of autolysis. This study examined whether differences in autolysis are caused by differences in expression of the major amidase, LytA, or the structure of its peptidoglycan substrate. No significant difference was detected by high-pressure liquid chromatography analysis of stem peptides released after treatment of purified peptidoglycan with amidase. Differences in the rate of digestion of purified cell walls, furthermore, did not correlate with susceptibility to autolysis. Lower levels of autolysis in opaque variants, however, was associated with decreased levels of immunodetectable LytA on colony immunoblots and Western blots (immunoblots). Diminished cell-surface-associated LytA in opaque variants was also demonstrated by whole-cell inhibition enzyme-linked immunosorbent assay. Since transparent variants have been shown both to colonize the nasopharynx more efficiently in an animal model and to express more surface-exposed LytA, it was determined whether LytA contributes to colonization in a neonatal rat model of pneumococcal carriage. Defined mutants in the lytA gene were used to show that there was no significant contribution by LytA to nasopharyngeal colonization in this model. Although the expression of LytA was shown to undergo phase variation in association with colony morphology, lytA mutants are still capable of phenotypic variation in colony morphology, which suggests that other factors are responsible for intrastrain differences which affect colonization.

Abstract. Fast revegetation by means of sowing seed mixtures of shrub and herbaceous species is a measure to prevent bare soils from wind and water erosion. A field experiment was used to test the effect of species selection and the ratio of shrub to herbaceous species on vegetation formation and shrub growth. Results showed that herbaceous species hastened cover formation and maintained a high coverage for a longer period. However, the growth of shrubs was hindered. In the North China Plain or where the soil and climate are similar, the ratio of shrub to herbaceous seeds is proposed to be 6 : 4–7 : 3 (weight ratio). Among the herbaceous species tested, Festuca arundinacea Schreb. grows relatively slow, so it should be mixed with other fast-growing species in the practice of rapid revegetation, and a seeding density lower than 6 g m−2 is proposed when applied; Orychophragmus violaceus O. E. Schulz. wilts when the seeds are ripe, leading to a significant decrease of coverage, so other species with different phenology should be involved when it is applied; Viola philippica Car. is a good ground cover plant which grows fast and maintains a stable coverage from July to October, and a seeding density of 1.5 g m−2 is proposed for rapid revegetation. Herbaceous species have different traits. Three different types of herbs were found in our experiment: slow-growing stable species (F. arundinacea), fast-growing unstable species (O. violaceus) and fast-growing stable species (V. philippica). Shrubs, slow-growing stable species and fast-growing unstable species should not be used alone because they cannot cover the ground fast or they cannot maintain a long period of good coverage. A small seeding rate of fast-growing stable species should be used to ensure a fair coverage against erosion. Because natural environmental conditions are heterogeneous and stochastic, more species should be added to enhance the stability of plant community.

In this study we assessed the impact of elevated CO2 with unlimited water and complete nutrient on the growth and nitrogen economy of ten woody Acacia species that differ in relative growth rate (RGR). Specifically, we asked whether fast- and slow-growing species systematically differ in their response to elevated CO2. Four slow-growing species from semi-arid environments (Acacia aneura, A. colei, A. coriacea and A. tetragonophylla) and six fast-growing species from mesic environments (Acacia dealbata, A. implexa, A. mearnsii, A. melanoxylon, A. irrorata and A. saligna) were grown in glasshouses with either ambient (˜350 ppm) or elevated (˜700 ppm) atmospheric CO2. All species reached greater final plant mass with the exception of A. aneura, and RGR, averaged across all species, increased by 10% over a 12-week period when plants were exposed to elevated CO2. The stimulation of RGR was evident throughout the 12-week growth period. Elevated CO2 resulted in less foliage area per unit foliage dry mass, which was mainly the result of an increase in foliage thickness with a smaller contribution from greater dry matter content per unit fresh mass. The net assimilation rate (NAR, increase in plant mass per unit foliage area and time) of the plants grown at elevated CO2 was higher in all species (on average 30% higher than plants in ambient CO2) and was responsible for the increase in RGR. The higher NAR was associated with a substantial increase in foliar nitrogen productivity in all ten Acacia species. Plant nitrogen concentration was unaltered by growth at elevated CO2 for the slow-growing Acacia species, but declined by 10% for faster-growing species. The rate of nitrogen uptake per unit root mass was higher in seven of the species when grown under elevated CO2, and leaf area per unit root mass was reduced by elevated CO2 in seven of the species. The absolute increase in RGR due to growth under elevated CO2 was greater for fast- than for slow-growing Acacia species.

Fine root turnover of trees is a major C input to soil. However, the quality of litter input is influenced by root morphological traits and tissue chemical composition. In this study, fine roots of ten tropical woody species were collected from an Afromontane forest in the northern highlands of Ethiopia. The fine roots were analysed for root morphological traits and tissue chemistry measured as proxy carbon fractionations. Based on stem increment, the 10 species were divided into faster- and slower-growing species. Faster-growing species exhibited higher specific root length (1362 cm g−1) than slower-growing species (923 cm g−1). Similarly specific root area was higher in faster-growing species (223 cm2 g−1) than in slower-growing species (167 cm2 g−1). Among the carbon fractions, the acid-insoluble fraction (AIF) was the highest (44–51%). The carbon content, AIF, and the lignocellulose index were higher for slower-growing species. Root tissue density was lower in faster-growing species (0.33 g cm−3) than slower-growing species (0.40 g cm−3) and showed a strong positive correlation with carbon content (r2 = 0.84) and the AIF (rpearson = 0.93). The morphological traits of fine roots between faster- and slower-growing species reflect the ecological strategy they employ. Slower-growing species have a higher tissue density which may reflect a greater longevity.

Inherent Variation in Growth Rate Between Higher Plants: A Search for Physiological Causes and Ecological Consequences

Inherent Variation in Growth Rate Between Higher Plants: A Search for Physiological Causes and Ecological Consequences

BackgroundA unique and essential property of embryonic stem cells is the ability to self-renew and differentiate into multiple cell lineages. However, the possible differences in proliferation and differentiation capabilities among independently-derived human embryonic stem cells (hESCs) are not well known because of insufficient characterization. To address this question, a side-by-side comparison of 1) the ability to maintain an undifferentiated state and to self-renew under standard conditions; 2) the ability to spontaneously differentiate into three primary embryonic germ lineages in differentiating embryoid bodies; and 3) the responses to directed neural differentiation was made between three NIH registered hES cell lines I3 (TE03), I6 (TE06) and BG01V. Lines I3 and I6 possess normal XX and a normal XY karyotype while BG01V is a variant cell line with an abnormal karyotype derived from the karyotypically normal cell line BG01.ResultsUsing immunocytochemistry, flow cytometry, qRT-PCR and MPSS, we found that all three cell lines actively proliferated and expressed similar "stemness" markers including transcription factors POU5F1/Oct3/4 and NANOG, glycolipids SSEA4 and TRA-1-81, and alkaline phosphatase activity. All cell lines differentiated into three embryonic germ lineages in embryoid bodies and into neural cell lineages when cultured in neural differentiation medium. However, a profound variation in colony morphology, growth rate, BrdU incorporation, and relative abundance of gene expression in undifferentiated and differentiated states of the cell lines was observed. Undifferentiated I3 cells grew significantly slower but their differentiation potential was greater than I6 and BG01V. Under the same neural differentiation-promoting conditions, the ability of each cell line to differentiate into neural progenitors varied.ConclusionOur comparative analysis provides further evidence for similarities and differences between three hESC lines in self-renewal, and spontaneous and directed differentiation. These differences may be associated with inherited variation in the sex, stage, quality and genetic background of embryos used for hESC line derivation, and/or changes acquired during passaging in culture.

1 A central concept in forest ecology is that differences in the growth rates and shade tolerances of tree species determine patterns of secondary succession. The most shade-tolerant tree species are the competitive dominants in late-successional forests, while species with fast growth rates persist through rapid establishment after disturbance. There is ample support for niche differentiation along the shade-tolerance axis, at least for temperate forests, but less thought has been given to the range of shade tolerances and growth rates encountered within a community and to how it might vary along environmental gradients. 2 We hypothesized that a wider range of growth rates and shade tolerances are found on nutrient-rich soils, because such soils not only support fast-growing species with high metabolic rates, but also species capable of tolerating the very deep shade cast by forest canopies growing where nutrients are plentiful. We test our hypothesis by quantifying light transmission through two neighbouring forests in southern New Zealand, one on phosphorus-rich alluvial soil and one on phosphorus-depleted marine-terrace soil, and comparing the growth rates of saplings on these contrasting sites. 3 Less light was transmitted to the forest floor on alluvial sites than on marine terraces (2.5% vs. 7.5% daylight, on average) and neighbourhood analyses within mapped stands indicated that large-leaved subcanopy species were responsible for intercepting that extra light. Sapling growth was strongly inhibited by shade in the understorey of the alluvial forests, but was less inhibited under the terrace forests. 4 Fast-growing subcanopy species were common on the alluvial sites and these species had characteristically soft leaves and high foliar-nutrient concentrations. Slow-growing shade-tolerant species were also abundant on these sites. Therefore, the interspecific variance in growth rates was greater on nutrient-rich sites, supporting our hypothesis of a greater range of shade tolerance niches on better soils. Of the five species found on both forest sites, all five had greater high-light growth rate on the alluvial sites. 5 Synthesis: A wider range of growth rates was observed in the nutrient-rich forests. This wider range may translate into a greater number of shade tolerance niches and thereby provides an explanation for the greater numbers of species commonly found on nutrient-rich soils when compared with neighbouring nutrient-poor sites.

Abstract:Spatial association patterns reflect underlying mechanisms of coexistence, community structure of plant species in tropical forests. We hypothesized that if spatial associations between two species shift toward segregation patterns during the course of growth, deterministic mechanisms, such as interspecific competition and habitat differentiation, would prevail, whereas if no directed change in spatial associations between two species is observed and, consequently, the initial association pattern is retained through growth, the two species would experience weak interspecific competition and show no habitat differentiation. To assess the underlying mechanisms operating between confamilial species, we analysed spatial associations among 11 dipterocarp species in terms of three growth stages distinguished on the basis of dbh in the Pasoh 50-ha plot in Peninsular Malaysia. We analysed the spatial associations of all possible combinations among identical stages (165 pairs) and among different stages (330 pairs) for each pair of 11 species, except between identical species. Our previous study revealed that the 11 species could be characterized into two classes: seven fast-growing species exhibited high growth and mortality rates, spatial aggregation on a small scale, and positive habitat associations, while four slow-growing species exhibited low growth and mortality rates, spatial aggregation on a large scale, and no habitat associations except one. Spatial segregation was observed between fast-growing species (32 pairs, 17%) and between species of different classes (35 pairs, 14%), but not between slow-growing species. Throughout the growth stages, positive associations with other species were maintained for slow-growing species versus fast-growing species. In contrast, changes in initial associations toward segregation were observed more in fast-growing species. These results indicated that interspecific competition or habitat differentiation dominated for fast-growing species, while non-directed random processes dominated for slow-growing species.

We evaluated the responses in growth, biomass allocation, photosynthesis and stomatal conductance, to changes in light in woody seedlings from the tropical deciduous forest in Mexico, which shows a highly seasonal rain pattern. We studied ten species, which differed by 30-fold in relative growth rate (RGR). We analyzed plant growth in two contrasting light levels during 52 days and two transfers: from high to low (HL) and from low to high (LH) light intensity, and the respective controls in high (HH) and low (LL) light for another 52 days. The photosynthetic capacity (A max) and stomatal conductance were measured at the day of the transfer between light conditions and at the end of the experiment. Species with high RGR showed the largest changes in RGR in response to contrasting light conditions (HH/LL ratio), and species with low RGR showed low responses. The fast-growing species were the most plastic, followed by species with intermediate growth rates, with the slow-growing species being the least plastic. Fast-growing species achieved higher maximum photosynthetic capacities (A max) and stomatal conductance and higher response to light than slow-growing species. Species with high RGR showed a low RGR HH/LH ratio, suggesting a large response of L plants when transfered to H. The RGR of the species were associated with species specific leaf area and with the response in the leaf area, net assimilation rate and leaf weight ratio, suggesting the importance of the leaf area produced and the leaf characteristics rather than root:shoot ratio in determining RGR. Considering that seed germination is expected at the beginning of the rainy period, seedlings of most of the species will experience high-light conditions during its early growth. There are large annual variations in the time required for canopy closure (35-75 days). The influence of these variations may have different effect on the species studied. Species with intermediate growth rate and intermediate response to light changes were less affected by light reduction than fast-growing species. The intermediate-RGR species Caesalpiniaeriostachys is the most abundant and widely distributed species, perhaps this could be in part due to its ability to acclimate to both light increases and decreases. The fast-growing species studied here can be found in open sites in the forest and in areas cleared for pasture growth. These fast-growing species eventually reach the canopy, although this may require several canopy openings during their lives, which implies juvenile shade tolerance. In the tropical deciduous forest juvenile pioneer trees also benefit from the temporary high light available caused by the dry period during the rainy season. The slow-growing species Celaenodendronmexicanum forms small patches of monospecific forest; the adult trees are not completely deciduous, and they retain their old leaves for a long time period before shedding. Thus seedlings of this species may receive lower levels of light, in agreement with its shade tolerance and its lower response to light increases.

Deforestation of tropical dry forest reduces soil fertility, with negative effects on future restoration intervention. To evaluate the effect of initial soil properties on three-year performance of six tree species in restoration settings, we measured C, N, and P contents in topsoils of 48 plots under minimal (exclusions of livestock grazing) and maximal (plantings of six native species) restoration intervention during two years in tropical dry forest in central Mexico. Survival and height and diameter relative growth rates were evaluated by species and by growth rank (three fast- and three slow-growing species). After two years, organic C and the C:N ratio increased early during natural succession; these increases might be related to high density of N2-fixing recruits at both intervention levels. Changes in N availability for plants (i.e., NO3− and NH4+ contents) occurred after cattle exclusion. After 40 months, the fast-growing legume Leucaena esculenta (DC.) Benth. had the highest survival (65.55%) and relative growth rate in both height (3.16%) and diameter (5.67%). Fast-growing species had higher survival and diameter growth rates than slow-growing species. Higher diameter growth rates for fast-growing species may be associated with a higher ability to forage for soil resources, whereas similar height growth rates for slow and fast-growing species suggested low competition for light due to slow natural succession at the site. Planted seedlings had higher survival possibly due to initial high NO3− content in the soil. Also, fast-growing species seem to benefit from initially higher pH in the soil. Both soil properties (i.e., pH and NO3−) may be augmented to favor the performance of fast-growing species in restoration plantings and to further accelerate soil recovery in tropical dry forests.