Abstract

Despite the important biological activities of natural product naphthoquinones, the biosynthetic pathways of and resistance mechanisms against such compounds remain poorly understood in fungi. Here, we report that the genes responsible for the biosynthesis of Monascus naphthoquinones (monasones) reside within the gene cluster for Monascus azaphilone pigments (MonAzPs). We elucidate the biosynthetic pathway of monasones by a combination of comparative genome analysis, gene knockouts, heterologous coexpression, and in vivo and in vitro enzymatic reactions to show that this pathway branches from the first polyketide intermediate of MonAzPs. Furthermore, we propose that the monasone subset of biosynthetic genes also encodes a two-tiered resistance strategy in which an inducible monasone-specific exporter expels monasones from the mycelia, while residual intracellular monasones may be rendered nontoxic through a multistep reduction cascade.IMPORTANCE The genes for Monascus naphthoquinone (monasone) biosynthesis are embedded in and form a composite supercluster with the Monascus azaphilone pigment biosynthetic gene cluster. Early biosynthetic intermediates are shared by the two pathways. Some enzymes encoded by the supercluster play double duty in contributing to both pathways, while others are specific for one or the other pathway. The monasone subcluster is independently regulated and inducible by elicitation with competing microorganisms. This study illustrates genomic and biosynthetic parsimony in fungi and proposes a potential path for the evolution of the mosaic-like azaphilone-naphthoquinone supercluster. The monasone subcluster also encodes a two-tiered self-resistance mechanism that models resistance determinants that may transfer to target microorganisms or emerge in cancer cells in case of naphthoquinone-type cytotoxic agents.

Highlights

  • Despite the important biological activities of natural product naphthoquinones, the biosynthetic pathways of and resistance mechanisms against such compounds remain poorly understood in fungi

  • We have found that cocultivation of the wild-type M. ruber M7 with various bacteria or fungi elicits the biosynthesis of compounds 2, 3, and 4, while the production of Monascus azaphilone pigments (MonAzPs) remains undisturbed under these culture conditions (Table S4 [19])

  • All MonAzPs and the monasone congeners 2, 3, and 4 should be derived from M. ruber M7, since these compounds were not detected upon monoculture of the challenger microorganisms (Fig. S1, Penicillium expansum ATCC 7861 as an example [19])

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Summary

Introduction

Despite the important biological activities of natural product naphthoquinones, the biosynthetic pathways of and resistance mechanisms against such compounds remain poorly understood in fungi. IMPORTANCE The genes for Monascus naphthoquinone (monasone) biosynthesis are embedded in and form a composite supercluster with the Monascus azaphilone pigment biosynthetic gene cluster. The monasone subcluster encodes a two-tiered self-resistance mechanism that models resistance determinants that may transfer to target microorganisms or emerge in cancer cells in case of naphthoquinone-type cytotoxic agents. Naphthoquinones have been considered model compounds to study polyketide biosynthesis in filamentous fungi because of their wide distribution and various bioactivities (6, 10). These studies revealed significant differences in naphthoquinone biosynthesis, indicating that the corresponding pathways are polyphyletic (6, 7, 10). While these studies concentrated on enzymatic degradation by reductases (14), it is still unclear if other naphthoquinone resistance determinants exist in fungi

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