Abstract
A mitochondrial DNA character set based on cytochrome b gene variations is described that may be used in conjunction with established nuclear gene differences to assess largemouth bass Micropterus salmoides population structure and dynamics. Alignment of known cytochrome b sequences revealed two regions where the functional constraints of the molecule appear to be sufficiently reduced to allow several amino acid substitutions. Restriction analysis was used to probe nucleotide variation within one of these evolutionary hotspots, resulting in the discovery of fixed largemouth bass subspecific cytochrome b haplotypes. Application of two molecular character sets, one founded on fixed allelic variation in nuclear genes and the other on mtDNA cytochrome b diversity, revealed that in several Texas populations, where the Florida subspecies was introduced into extant populations of northern largemouth bass, hybridization was evident. The direction of the introgression vector could be determined through the combination of both character Sets.
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